Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 1.7e-232 809.3 502 100.0
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.0e-165 587.4 534 72.7
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.0e-157 560.8 537 70.9
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 7.2e-127 458.4 545 56.0
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 3.6e-118 429.5 554 54.9
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 8.6e-96 355.1 429 56.6
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 8.6e-96 355.1 544 49.3
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 8.6e-96 355.1 544 49.3
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 1.6e-89 334.3 535 47.7
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 1.6e-89 334.3 535 47.7
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 3.3e-87 326.6 532 48.7
Thhalv10022236m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 3.3e-87 326.6 492 48.4
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 6.4e-51 206.1 307 48.2
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.2e-49 201.8 309 46.6
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 4.0e-45 186.8 558 36.9
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 5.3e-45 186.4 257 49.0
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 9.0e-45 185.7 583 36.4
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 5.8e-44 183.0 585 34.7
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 5.8e-44 183.0 631 33.4
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 1.7e-43 181.4 573 34.0
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 2.5e-42 177.6 320 43.4
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 1.6e-41 174.9 473 37.0
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 1.8e-40 171.4 474 36.5
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 9.7e-39 165.6 263 48.7
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 1.3e-38 165.2 425 37.4
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 1.6e-38 164.9 424 36.8
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 1.4e-37 161.8 264 46.6
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 9.0e-37 159.1 314 42.4
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 2.2e-35 154.5 434 35.0
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 7.2e-34 149.4 454 36.3
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 2.1e-33 147.9 432 35.0
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 1.5e-31 141.7 201 50.2
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 2.5e-31 141.0 188 53.2
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 2.5e-31 141.0 188 53.2
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 1.3e-27 128.6 314 36.6
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 6.5e-27 126.3 244 36.5
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 8.5e-27 125.9 247 36.0
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 4.2e-26 123.6 274 40.1
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 1.4e-24 118.6 271 37.3
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.4e-24 118.6 254 36.2
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 2.3e-24 117.9 276 39.9
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 2.3e-24 117.9 277 39.4
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 2.3e-24 117.9 261 36.8
BcaC01g02808 Brassica carinata HOM05D004299 ORTHO05D003557 3.0e-24 117.5 552 29.7
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 3.9e-24 117.1 276 37.0
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 5.1e-24 116.7 303 36.0
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 1.5e-23 115.2 270 38.9
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 2.6e-23 114.4 299 34.1
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 2.6e-23 114.4 256 37.9
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 4.4e-23 113.6 250 36.0
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 5.7e-23 113.2 312 35.6
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 9.7e-23 112.5 339 34.2
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 9.7e-23 112.5 264 38.6
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.3e-22 112.1 251 35.9
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 4.8e-22 110.2 246 34.6
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 8.2e-22 109.4 497 30.2
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 8.2e-22 109.4 213 40.8
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 1.4e-21 108.6 328 32.3
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 2.4e-21 107.8 267 34.1
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 4.1e-21 107.1 268 35.4
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 4.1e-21 107.1 344 31.7
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 5.3e-21 106.7 335 31.9
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 7.0e-21 106.3 267 34.1
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 7.0e-21 106.3 264 35.6
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 1.5e-20 105.1 469 29.6
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.0e-20 104.8 244 33.2
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 2.0e-20 104.8 340 32.1
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 7.7e-20 102.8 256 35.2
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 7.7e-20 102.8 205 38.0
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 1.0e-19 102.4 206 39.8
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 1.3e-19 102.1 341 32.0
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 1.7e-19 101.7 455 30.3
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 1.7e-19 101.7 251 35.9
BcaB07g32711 Brassica carinata HOM05D004299 ORTHO05D003557 5.0e-19 100.1 164 41.5
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 1.1e-18 99.0 242 36.8
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 1.1e-18 99.0 276 33.7
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 2.5e-18 97.8 272 33.5
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 4.2e-18 97.1 456 30.0
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 1.2e-17 95.5 250 37.2
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 1.2e-17 95.5 280 35.7
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 1.6e-17 95.1 247 34.4
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 2.1e-17 94.7 323 31.6
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.7e-17 94.4 237 36.3
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 2.7e-17 94.4 285 33.7
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 4.7e-17 93.6 264 33.0
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 8.0e-17 92.8 266 34.2
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 8.0e-17 92.8 241 32.8
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 1.4e-16 92.0 299 32.4
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 1.8e-16 91.7 316 30.1
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 1.8e-16 91.7 264 32.2
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 5.2e-16 90.1 319 28.8
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 6.7e-16 89.7 238 35.7
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.5e-15 88.6 315 32.7
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 2.0e-15 88.2 156 39.7
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 2.0e-15 88.2 201 32.3
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 4.4e-15 87.0 303 30.7
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 5.7e-15 86.7 311 30.2
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 1.3e-14 85.5 132 40.9
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 1.7e-14 85.1 460 26.3
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 2.8e-14 84.3 122 41.8
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 2.8e-14 84.3 464 27.6
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 3.7e-14 84.0 269 32.3
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 3.7e-14 84.0 324 29.6
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 6.3e-14 83.2 274 31.4
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.4e-13 82.0 188 33.5
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 1.4e-13 82.0 231 33.3
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 1.4e-13 82.0 325 30.8
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 1.4e-13 82.0 440 25.5
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 4.1e-13 80.5 97 46.4
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 4.1e-13 80.5 321 29.9
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 4.1e-13 80.5 302 29.1
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 7.0e-13 79.7 318 26.7
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 1.6e-12 78.6 277 28.5
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 1.6e-12 78.6 243 32.1
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 3.5e-12 77.4 120 42.5
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.3e-11 75.5 247 32.0
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 2.2e-11 74.7 441 26.5
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 3.8e-11 73.9 235 31.9
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 3.8e-11 73.9 245 29.8
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 5.0e-11 73.6 329 27.4
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 1.5e-10 72.0 273 30.4
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 1.9e-10 71.6 177 33.3
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 1.9e-10 71.6 181 37.0
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 2.5e-10 71.2 250 28.8
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 2.5e-10 71.2 92 44.6
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 7.2e-10 69.7 73 53.4
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 7.2e-10 69.7 98 44.9
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 1.6e-09 68.6 73 53.4
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 4.7e-09 67.0 296 28.7
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 6.1e-09 66.6 231 29.4
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 8.0e-09 66.2 318 28.3
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 8.0e-09 66.2 174 34.5
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 8.0e-09 66.2 242 29.3
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 1.4e-08 65.5 296 28.7
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 1.8e-08 65.1 256 28.1
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 3.0e-08 64.3 396 27.0
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 6.8e-08 63.2 277 27.1
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 1.5e-07 62.0 309 27.5
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 1.5e-07 62.0 154 35.1
A10p22240 Brassica napus HOM05D004299 ORTHO05D003557 2.0e-07 61.6 85 48.2
BraA10t44283Z Brassica rapa HOM05D004299 ORTHO05D003557 2.0e-07 61.6 85 48.2
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 5.7e-07 60.1 75 46.7
Zm00001eb251590 Zea mays HOM05D021310 ORTHO05D003557 7.5e-07 59.7 240 28.8
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 2.2e-06 58.2 46 58.7
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 2.2e-06 58.2 45 60.0
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 2.8e-06 57.8 39 69.2
Lalb_Chr16g0376621 Lupinus albus HOM05D004299 ORTHO05D003557 2.8e-06 57.8 234 26.5
PSO017G4482 Papaver somniferum HOM05D018639 ORTHO05D037265 8.3e-06 56.2 213 25.4
Zm00001eb063140 Zea mays HOM05D021310 ORTHO05D003557 8.3e-06 56.2 60 46.7


User provided reference genes

Program Settings