Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0211 Capsella rubella HOM05D004822 ORTHO05D005632 2.5e-150 535.4 266 100.0
AT3G02980 Arabidopsis thaliana HOM05D004822 ORTHO05D005632 4.1e-129 464.9 247 91.9
Sp3g02040 Schrenkiella parvula HOM05D004822 ORTHO05D005632 6.1e-125 451.1 251 89.6
A05p44150 Brassica napus HOM05D004822 ORTHO05D005632 4.7e-117 424.9 248 85.1
BraSC90t46695Z Brassica rapa HOM05D004822 ORTHO05D005632 4.7e-117 424.9 248 85.1
Sp6g27330 Schrenkiella parvula HOM05D004822 ORTHO05D005632 3.5e-112 408.7 271 75.6
CARHR196360 Cardamine hirsuta HOM05D004822 ORTHO05D005632 1.0e-111 407.1 271 74.2
AL6G27820 Arabidopsis lyrata HOM05D004822 ORTHO05D005632 6.5e-111 404.4 271 74.9
Carub.0006s1502 Capsella rubella HOM05D004822 ORTHO05D005632 1.9e-110 402.9 271 74.2
THA.LOC104820895 Tarenaya hassleriana HOM05D004822 ORTHO05D005632 9.5e-110 400.6 272 75.0
AT5G16800 Arabidopsis thaliana HOM05D004822 ORTHO05D005632 1.6e-109 399.8 271 73.8
Aa31LG11G12780 Aethionema arabicum HOM05D004822 ORTHO05D005632 8.0e-109 397.5 270 74.1
BolC3t13414H Brassica oleracea HOM05D004822 ORTHO05D005632 1.5e-107 393.3 269 74.0
THA.LOC104827203 Tarenaya hassleriana HOM05D004822 ORTHO05D005632 9.8e-107 390.6 261 74.3
C03p09170 Brassica napus HOM05D004822 ORTHO05D005632 1.3e-106 390.2 269 73.6
BcaB01g05242 Brassica carinata HOM05D004822 ORTHO05D005632 3.7e-106 388.7 269 73.2
BcaB01g04968 Brassica carinata HOM05D004822 ORTHO05D005632 1.1e-105 387.1 273 71.8
Aa31LG5G13470 Aethionema arabicum HOM05D004822 ORTHO05D005632 4.5e-104 381.7 251 74.1
A03p07960 Brassica napus HOM05D004822 ORTHO05D005632 2.3e-103 379.4 273 71.8
BraA03t10121Z Brassica rapa HOM05D004822 ORTHO05D005632 2.3e-103 379.4 273 71.8
A10p22430 Brassica napus HOM05D004822 ORTHO05D005632 3.6e-101 372.1 258 72.5
C09p60280 Brassica napus HOM05D004822 ORTHO05D005632 1.4e-100 370.2 258 72.1
BcaC04g18845 Brassica carinata HOM05D004822 ORTHO05D005632 4.0e-100 368.6 258 71.7
BolC9t58861H Brassica oleracea HOM05D004822 ORTHO05D005632 3.2e-97 359.0 275 69.1
BraA10t44302Z Brassica rapa HOM05D004822 ORTHO05D005632 7.0e-97 357.8 279 68.1
AL3G12440 Arabidopsis lyrata HOM05D004822 ORTHO05D005632 3.2e-89 332.4 253 68.4
Thhalv10014541m.g Eutrema salsugineum HOM05D004822 ORTHO05D005632 4.6e-88 328.6 223 74.4
TWI12G0583 Tripterygium wilfordii HOM05D004822 ORTHO05D005632 9.5e-86 320.9 254 61.8
Duzib177G1199 Durio zibethinus HOM05D004822 ORTHO05D005632 1.2e-85 320.5 256 62.5
COL.COLO4_15238 Corchorus olitorius HOM05D004822 ORTHO05D005632 2.1e-85 319.7 240 64.2
Cfa016047 Carpinus fangiana HOM05D004822 ORTHO05D005632 8.1e-85 317.8 249 61.4
Duzib106G0609 Durio zibethinus HOM05D004822 ORTHO05D005632 8.1e-85 317.8 256 62.1
Prupe.2G327400 Prunus persica HOM05D004822 ORTHO05D005632 3.1e-84 315.8 256 61.3
TWI18G0151 Tripterygium wilfordii HOM05D004822 ORTHO05D005632 4.0e-84 315.5 255 60.4
Sabra13G0073000 Salix brachista HOM05D004822 ORTHO05D005632 8.9e-84 314.3 253 61.3
Thecc.05G215800 Theobroma cacao HOM05D004822 ORTHO05D005632 2.6e-83 312.8 238 63.4
RcHm_v2.0_Chr1g0384361 Rosa chinensis HOM05D004822 ORTHO05D005632 5.8e-83 311.6 257 59.9
Ciclev10021817m.g Citrus clementina HOM05D004822 ORTHO05D005632 2.9e-82 309.3 243 61.7
Atru.chr12.1891 Acer truncatum HOM05D004822 ORTHO05D005632 2.4e-81 306.2 240 60.8
Cc02_g00190 Coffea canephora HOM05D004822 ORTHO05D005632 3.2e-81 305.8 250 57.6
FvH4_7g34080 Fragaria vesca HOM05D004822 ORTHO05D005632 7.1e-81 304.7 247 61.1
Gohir.D08G241600 Gossypium hirsutum HOM05D004822 ORTHO05D005632 9.2e-81 304.3 260 58.5
Hma1.2p1_0649F.1_g195250 Hydrangea macrophylla HOM05D004822 ORTHO05D005632 1.2e-80 303.9 257 57.2
Manes.09G127500 Manihot esculenta HOM05D004822 ORTHO05D005632 1.2e-80 303.9 243 61.7
Lalb_Chr01g0000881 Lupinus albus HOM05D004822 ORTHO05D005632 1.6e-80 303.5 256 59.4
Gohir.A08G221666 Gossypium hirsutum HOM05D004822 ORTHO05D005632 2.7e-80 302.8 258 59.3
Dinv17249 Davidia involucrata HOM05D004822 ORTHO05D005632 3.5e-80 302.4 246 61.0
QL09p023219 Quercus lobata HOM05D004822 ORTHO05D005632 1.0e-79 300.8 238 61.3
Migut.F00086 Erythranthe guttata HOM05D004822 ORTHO05D005632 1.7e-79 300.1 256 58.6
Gorai.004G256900 Gossypium raimondii HOM05D004822 ORTHO05D005632 1.7e-79 300.1 225 63.1
MD07G1309700 Malus domestica HOM05D004822 ORTHO05D005632 2.3e-79 299.7 257 58.0
MD01G1237100 Malus domestica HOM05D004822 ORTHO05D005632 3.9e-79 298.9 257 57.6
arahy.Tifrunner.gnm1.ann1.UL380H Arachis hypogaea HOM05D004822 ORTHO05D005632 5.1e-79 298.5 256 57.0
Aqoxy3G02240 Aquilegia oxysepala HOM05D004822 ORTHO05D005632 8.6e-79 297.7 254 58.7
TAR362G0773 Trochodendron aralioides HOM05D004822 ORTHO05D005632 1.1e-78 297.4 245 58.4
Potri.019G050700 Populus trichocarpa HOM05D004822 ORTHO05D005632 1.9e-78 296.6 254 58.3
GSVIVG01024375001 Vitis vinifera HOM05D004822 ORTHO05D005632 1.9e-78 296.6 231 62.3
arahy.Tifrunner.gnm1.ann1.TC8PXF Arachis hypogaea HOM05D004822 ORTHO05D005632 2.5e-78 296.2 253 56.9
Dinv29145 Davidia involucrata HOM05D004822 ORTHO05D005632 2.5e-78 296.2 256 57.4
Potri.013G079900 Populus trichocarpa HOM05D004822 ORTHO05D005632 2.5e-78 296.2 225 63.1
CiPaw.05G216100 Carya illinoinensis HOM05D004822 ORTHO05D005632 4.3e-78 295.4 256 57.0
MSTRG.26924 Avicennia marina HOM05D004822 ORTHO05D005632 7.3e-78 294.7 240 60.4
Glyma.11G009600 Glycine max HOM05D004822 ORTHO05D005632 9.5e-78 294.3 256 59.0
Solyc03g097140.3 Solanum lycopersicum HOM05D004822 ORTHO05D005632 1.2e-77 293.9 229 62.0
MELO3C021888.2 Cucumis melo HOM05D004822 ORTHO05D005632 3.6e-77 292.4 247 58.7
Peaxi162Scf00516g00674 Petunia axillaris HOM05D004822 ORTHO05D005632 3.6e-77 292.4 241 59.8
CiPaw.06G034300 Carya illinoinensis HOM05D004822 ORTHO05D005632 6.2e-77 291.6 252 56.7
Phvul.002G040700 Phaseolus vulgaris HOM05D004822 ORTHO05D005632 6.2e-77 291.6 256 58.6
CANSAT56G1711 Cannabis sativa HOM05D004822 ORTHO05D005632 1.1e-76 290.8 232 59.1
Hund09803 Selenicereus undatus HOM05D004822 ORTHO05D005632 1.1e-76 290.8 240 60.4
Psat2g189120 Pisum sativum HOM05D004822 ORTHO05D005632 1.4e-76 290.4 259 57.9
ClCG09G016920 Citrullus lanatus HOM05D004822 ORTHO05D005632 3.1e-76 289.3 256 57.0
Nitab4.5_0000021g0700 Nicotiana tabacum HOM05D004822 ORTHO05D005632 3.1e-76 289.3 238 60.1
CsaV3_2G036410 Cucumis sativus L. HOM05D004822 ORTHO05D005632 4.0e-76 288.9 247 57.9
Lalb_Chr19g0140001 Lupinus albus HOM05D004822 ORTHO05D005632 5.2e-76 288.5 247 58.3
PGR042G2086 Punica granatum HOM05D004822 ORTHO05D005632 5.2e-76 288.5 260 55.8
vmacro06525 Vaccinium macrocarpon HOM05D004822 ORTHO05D005632 5.2e-76 288.5 250 58.0
Glyma.01G233200 Glycine max HOM05D004822 ORTHO05D005632 6.8e-76 288.1 256 58.6
Nitab4.5_0004530g0010 Nicotiana tabacum HOM05D004822 ORTHO05D005632 8.9e-76 287.7 238 59.2
Rhsim03G0222800 Rhododendron simsii HOM05D004822 ORTHO05D005632 8.9e-76 287.7 261 56.3
Sed0007243 Sechium edule HOM05D004822 ORTHO05D005632 1.5e-75 287.0 248 56.5
EL10Ac3g05059 Beta vulgaris HOM05D004822 ORTHO05D005632 2.0e-75 286.6 242 57.4
TPR.G37975 Trifolium pratense HOM05D004822 ORTHO05D005632 2.0e-75 286.6 258 57.4
DCAR_020414 Daucus carota HOM05D004822 ORTHO05D005632 7.6e-75 284.6 233 56.7
CAN.G1131.24 Capsicum annuum HOM05D004822 ORTHO05D005632 3.8e-74 282.3 229 60.3
ECA232G1387 Erigeron canadensis HOM05D004822 ORTHO05D005632 3.8e-74 282.3 241 57.7
HanXRQChr08g0231351 Helianthus annuus HOM05D004822 ORTHO05D005632 3.8e-74 282.3 238 58.0
HanXRQChr16g0512131 Helianthus annuus HOM05D004822 ORTHO05D005632 4.9e-74 282.0 228 59.6
Medtr5g007400 Medicago truncatula HOM05D004822 ORTHO05D005632 8.4e-74 281.2 258 56.2
Sc25g0001230 Simmondsia chinensis HOM05D004822 ORTHO05D005632 1.4e-73 280.4 257 55.3
LjContig00222g0020254 Lotus japonicus HOM05D004822 ORTHO05D005632 2.4e-73 279.6 265 54.3
PGSC0003DMG400003148 Solanum tuberosum HOM05D004822 ORTHO05D005632 3.2e-73 279.3 255 55.3
CSS0024551 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 5.4e-73 278.5 244 57.0
Haze_00399 Corylus avellana HOM05D004822 ORTHO05D005632 5.4e-73 278.5 196 67.3
Nitab4.5_0000150g0020 Nicotiana tabacum HOM05D004822 ORTHO05D005632 7.1e-73 278.1 230 57.8
Oeu007515.1 Olea europaea HOM05D004822 ORTHO05D005632 9.2e-73 277.7 230 58.7
CSS0024699 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 2.1e-72 276.6 227 59.5
Ah.04g156230 Amaranthus hybridus HOM05D004822 ORTHO05D005632 2.7e-72 276.2 254 53.1
SalBow4G2092 Salvia bowleyana HOM05D004822 ORTHO05D005632 6.0e-72 275.0 254 54.3
SalBow4G3298 Salvia bowleyana HOM05D004822 ORTHO05D005632 6.0e-72 275.0 254 54.3
Peaxi162Scf00133g00611 Petunia axillaris HOM05D004822 ORTHO05D005632 3.0e-71 272.7 269 50.2
Eucgr.K00079 Eucalyptus grandis HOM05D004822 ORTHO05D005632 6.6e-71 271.6 232 56.9
AUR62002079 Chenopodium quinoa HOM05D004822 ORTHO05D005632 1.9e-70 270.0 248 54.4
CSS0013609 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 3.3e-70 269.2 254 52.8
CSS0045344 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 4.3e-70 268.9 254 52.8
Actinidia08752 Actinidia chinensis HOM05D004822 ORTHO05D005632 1.6e-69 266.9 189 66.1
BolC5t35048H Brassica oleracea HOM05D004822 ORTHO05D005632 1.6e-69 266.9 152 86.8
Sopen03g027880 Solanum pennellii HOM05D004822 ORTHO05D005632 1.6e-69 266.9 284 50.0
HPP92_014856 Vanilla planifolia HOM05D004822 ORTHO05D005632 6.9e-68 261.5 230 55.7
unitig_747.g21929 Utricularia gibba HOM05D004822 ORTHO05D005632 1.2e-67 260.8 239 54.8
SEGI_16512 Sequoiadendron giganteum HOM05D004822 ORTHO05D005632 2.0e-67 260.0 257 50.6
SHI29591 Sapria himalayana HOM05D004822 ORTHO05D005632 9.9e-67 257.7 231 53.2
Lj3A886T38 Lonicera japonica HOM05D004822 ORTHO05D005632 3.8e-66 255.8 185 64.3
Nitab4.5_0001108g0050 Nicotiana tabacum HOM05D004822 ORTHO05D005632 1.1e-65 254.2 238 52.5
Nn1g00175 Nelumbo nucifera HOM05D004822 ORTHO05D005632 4.2e-65 252.3 194 63.4
BcaC04g18846 Brassica carinata HOM05D004822 ORTHO05D005632 3.0e-63 246.1 175 71.4
Lj3g0022054 Lotus japonicus HOM05D004822 ORTHO05D005632 5.1e-63 245.4 220 55.5
Zm00001eb251310 Zea mays HOM05D004822 ORTHO05D005632 8.7e-63 244.6 194 59.3
TAR374G1016 Trochodendron aralioides HOM05D004822 ORTHO05D005632 1.9e-62 243.4 221 54.3
ATR0829G204 Amborella trichopoda HOM05D004822 ORTHO05D005632 3.3e-62 242.7 203 57.6
arahy.Tifrunner.gnm1.ann1.YEB8JM Arachis hypogaea HOM05D004822 ORTHO05D005632 4.3e-62 242.3 233 52.4
DCAR_010536 Daucus carota HOM05D004822 ORTHO05D005632 9.0e-60 234.6 244 47.1
Eucgr.H04873 Eucalyptus grandis HOM05D004822 ORTHO05D005632 1.5e-59 233.8 190 59.5
arahy.Tifrunner.gnm1.ann1.IXL9K3 Arachis hypogaea HOM05D004822 ORTHO05D005632 2.6e-59 233.0 177 63.3
AUR62028196 Chenopodium quinoa HOM05D004822 ORTHO05D005632 5.8e-59 231.9 217 53.5
Pp3c21_19030 Physcomitrium patens HOM05D004822 ORTHO05D005632 1.7e-58 230.3 212 51.4
Mapoly0133s0015 Marchantia polymorpha HOM05D004822 ORTHO05D005632 1.9e-57 226.9 223 49.8
SGA_v2.0_scaffold44G16902 Striga asiatica HOM05D004822 ORTHO05D005632 2.4e-57 226.5 230 50.0
Pp3c19_16350 Physcomitrium patens HOM05D004822 ORTHO05D005632 1.8e-55 220.3 206 51.5
SMO146G0253 Selaginella moellendorffii HOM05D004822 ORTHO05D005632 4.3e-54 215.7 186 54.3
Rhsim09G0213500 Rhododendron simsii HOM05D004822 ORTHO05D005632 5.6e-54 215.3 273 44.7
Gorai.013G103600 Gossypium raimondii HOM05D004822 ORTHO05D005632 6.9e-52 208.4 172 62.2
BcaC05g30339 Brassica carinata HOM05D004822 ORTHO05D005632 2.1e-48 196.8 210 57.1
C05p63790 Brassica napus HOM05D000387 ORTHO05D005632 5.6e-46 188.7 115 80.9
Lsat_1_v5_gn_9_47720 Lactuca sativa HOM05D004822 ORTHO05D005632 2.8e-45 186.4 132 67.4
arahy.Tifrunner.gnm1.ann1.KDM1H7 Arachis hypogaea HOM05D004822 ORTHO05D005632 1.5e-43 180.6 230 43.5
CDE06G0869 Ceratophyllum demersum HOM05D000380 ORTHO05D000561 3.4e-43 179.5 161 54.7
arahy.Tifrunner.gnm1.ann1.U456D3 Arachis hypogaea HOM05D004822 ORTHO05D005632 1.0e-42 177.9 230 42.6
Duzib128G1067 Durio zibethinus HOM05D004822 ORTHO05D005632 4.6e-40 169.1 153 53.6
Sed0002247 Sechium edule HOM05D004822 ORTHO05D005632 2.5e-38 163.3 246 39.4
PGR142G2504 Punica granatum HOM05D004822 ORTHO05D005632 3.3e-38 162.9 177 47.5
Gohir.D13G099300 Gossypium hirsutum HOM05D004822 ORTHO05D005632 1.2e-35 154.5 151 54.3
SHI02573 Sapria himalayana HOM05D004822 ORTHO05D005632 8.5e-34 148.3 197 40.6
BcaC05g30307 Brassica carinata HOM05D004822 ORTHO05D005632 5.3e-28 129.0 88 77.3
CBR_g57081 Chara braunii HOM05D004822 ORTHO05D005632 5.0e-26 122.5 113 51.3
Cre13.g572150 Chlamydomonas reinhardtii HOM05D004822 ORTHO05D005632 1.6e-24 117.5 186 40.9
Ca_24437_v3 Cicer arietinum L. HOM05D004822 ORTHO05D005632 2.3e-23 113.6 86 66.3
Os02g0694201 Oryza sativa ssp. japonica HOM05D004822 ORTHO05D005632 2.8e-21 106.7 108 47.2
vmacro22183 Vaccinium macrocarpon HOM05D004822 ORTHO05D005632 5.5e-17 92.4 78 61.5
PRCOL_00005145 Prasinoderma coloniale HOM05D004822 ORTHO05D005632 2.7e-16 90.1 241 29.0
MCO05G124 Micromonas commoda HOM05D004822 ORTHO05D005632 2.2e-13 80.5 179 30.7
vmacro22182 Vaccinium macrocarpon HOM05D004822 ORTHO05D005632 8.2e-13 78.6 72 55.6
BolC3t19099H Brassica oleracea HOM05D001710 ORTHO05D014486 5.5e-09 65.9 52 65.4
CANSAT54G1009 Cannabis sativa HOM05D004398 ORTHO05D005268 2.3e-07 60.5 152 24.3
CANSAT54G1633 Cannabis sativa HOM05D004398 ORTHO05D005268 2.3e-07 60.5 152 24.3
CANSAT54G2276 Cannabis sativa HOM05D004398 ORTHO05D005268 2.3e-07 60.5 152 24.3
Zm00001eb161820 Zea mays HOM05D004398 ORTHO05D005268 2.3e-07 60.5 153 22.9
Carub.0006s0980 Capsella rubella HOM05D004398 ORTHO05D005268 5.2e-07 59.3 153 22.9
AL6G21990 Arabidopsis lyrata HOM05D004398 ORTHO05D005268 6.7e-07 58.9 153 22.9
MSTRG.25860 Avicennia marina HOM05D004398 ORTHO05D005268 6.7e-07 58.9 179 24.0
Rhsim07G0150800 Rhododendron simsii HOM05D004398 ORTHO05D005268 6.7e-07 58.9 152 23.0
Thhalv10014874m.g Eutrema salsugineum HOM05D004398 ORTHO05D005268 1.2e-06 58.2 159 22.6
Lj7A716G42 Lonicera japonica HOM05D004398 ORTHO05D005268 1.2e-06 58.2 152 23.7
Medtr5g098790 Medicago truncatula HOM05D004398 ORTHO05D005268 1.2e-06 58.2 159 23.3
PRCOL_00002723 Prasinoderma coloniale HOM05D004398 ORTHO05D005268 1.2e-06 58.2 153 23.5
ATR0618G325 Amborella trichopoda HOM05D004398 ORTHO05D005268 1.5e-06 57.8 157 22.9
HanXRQChr13g0402451 Helianthus annuus HOM05D004398 ORTHO05D005268 1.5e-06 57.8 158 24.1
PSO017G1065 Papaver somniferum HOM05D004398 ORTHO05D005268 1.5e-06 57.8 174 24.1
Sp6g32240 Schrenkiella parvula HOM05D004398 ORTHO05D005268 1.5e-06 57.8 159 23.3
Sc09g0008690 Simmondsia chinensis HOM05D004398 ORTHO05D005268 1.5e-06 57.8 152 23.0
PSO170G5542 Papaver somniferum HOM05D004398 ORTHO05D005268 2.0e-06 57.4 174 23.6
TAR636G1605 Trochodendron aralioides HOM05D002580 ORTHO05D005268 2.0e-06 57.4 152 23.0
FAN24G0064 Fragaria x ananassa HOM05D004398 ORTHO05D005268 3.3e-06 56.6 152 23.7
Lj8A616G45 Lonicera japonica HOM05D004398 ORTHO05D005268 3.3e-06 56.6 152 23.0
Os01g0610400 Oryza sativa ssp. japonica HOM05D004398 ORTHO05D005268 3.3e-06 56.6 152 22.4
FAN27G0432 Fragaria x ananassa HOM05D004398 ORTHO05D005268 4.4e-06 56.2 152 23.7
Mapoly0023s0029 Marchantia polymorpha HOM05D004398 ORTHO05D005268 4.4e-06 56.2 157 23.6
Nitab4.5_0002339g0050 Nicotiana tabacum HOM05D004398 ORTHO05D005268 4.4e-06 56.2 158 24.7
Aa31LG3G15850 Aethionema arabicum HOM05D004398 ORTHO05D005268 5.7e-06 55.8 159 22.0
Psat2g001840 Pisum sativum HOM05D004398 ORTHO05D005268 5.7e-06 55.8 164 23.8
Sabra06G0194700 Salix brachista HOM05D004398 ORTHO05D005268 5.7e-06 55.8 165 23.0
Ca_06490_v3 Cicer arietinum L. HOM05D004398 ORTHO05D005268 7.5e-06 55.5 164 23.8
Eucgr.C01806 Eucalyptus grandis HOM05D004398 ORTHO05D005268 9.7e-06 55.1 158 21.5
FAN15G0393 Fragaria x ananassa HOM05D004398 ORTHO05D005268 9.7e-06 55.1 152 23.0
Sed0003647 Sechium edule HOM05D004398 ORTHO05D005268 9.7e-06 55.1 152 23.0
Sed0007380 Sechium edule HOM05D004398 ORTHO05D005268 9.7e-06 55.1 152 23.0


User provided reference genes

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