Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0177 Capsella rubella HOM05D004670 ORTHO05D008020 6.1e-280 967.2 644 100.0
AL3G12030 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 2.2e-200 703.0 591 87.5
AT3G02650 Arabidopsis thaliana HOM05D004670 ORTHO05D008020 2.2e-197 693.0 590 87.3
Sp3g01690 Schrenkiella parvula HOM05D004670 ORTHO05D008020 5.5e-196 688.3 592 85.1
Thhalv10020352m.g Eutrema salsugineum HOM05D004670 ORTHO05D008020 3.1e-191 672.5 585 78.8
CARHR076670 Cardamine hirsuta HOM05D004670 ORTHO05D008020 8.5e-181 637.9 592 82.1
BolC1t05888H Brassica oleracea HOM05D004670 ORTHO05D008020 4.9e-160 568.9 589 74.9
BNapus_Darmor_BZH_scaffold_99p00180 Brassica napus HOM05D004670 ORTHO05D008020 8.3e-160 568.2 589 75.6
BraSC246t45824Z Brassica rapa HOM05D004670 ORTHO05D008020 3.5e-158 562.8 590 76.4
BcaB04g19393 Brassica carinata HOM05D004670 ORTHO05D008020 1.1e-156 557.8 591 76.0
A03p33060 Brassica napus HOM05D004670 ORTHO05D008020 2.6e-153 546.6 585 76.8
BraA03t12476Z Brassica rapa HOM05D004670 ORTHO05D008020 4.9e-152 542.3 585 76.6
BNapus_Darmor_BZH_scaffold_122p00150 Brassica napus HOM05D004670 ORTHO05D008020 5.4e-151 538.9 421 69.1
BcaC01g04430 Brassica carinata HOM05D004670 ORTHO05D008020 9.2e-151 538.1 582 76.6
BolC3t16289H Brassica oleracea HOM05D004670 ORTHO05D008020 9.2e-151 538.1 582 76.6
C03p40240 Brassica napus HOM05D004670 ORTHO05D008020 2.0e-150 537.0 578 77.2
THA.LOC104802429 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 2.7e-126 456.8 587 66.6
THA.LOC104827168 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 4.6e-118 429.5 599 62.4
Thecc.06G195000 Theobroma cacao HOM05D004670 ORTHO05D008020 1.6e-86 324.7 504 61.3
Cfa014310 Carpinus fangiana HOM05D004670 ORTHO05D008020 1.1e-84 318.5 586 53.1
Duzib150G0183 Durio zibethinus HOM05D004670 ORTHO05D008020 1.1e-84 318.5 604 55.6
TWI18G1064 Tripterygium wilfordii HOM05D004670 ORTHO05D008020 1.3e-83 315.1 475 56.6
Atru.chr2.211 Acer truncatum HOM05D004670 ORTHO05D008020 1.7e-83 314.7 592 53.0
QL10p048429 Quercus lobata HOM05D004670 ORTHO05D008020 8.2e-83 312.4 511 57.1
Potri.001G361500 Populus trichocarpa HOM05D004670 ORTHO05D008020 1.4e-82 311.6 601 54.1
MD00G1017000 Malus domestica HOM05D004670 ORTHO05D008020 2.4e-82 310.8 500 60.0
Haze_12758 Corylus avellana HOM05D004670 ORTHO05D008020 9.1e-82 308.9 426 45.3
Gohir.A13G215800 Gossypium hirsutum HOM05D004670 ORTHO05D008020 1.3e-80 305.1 582 55.0
Haze_20607 Corylus avellana HOM05D004670 ORTHO05D008020 3.8e-80 303.5 432 44.2
Dinv17145 Davidia involucrata HOM05D004670 ORTHO05D008020 3.8e-80 303.5 487 60.4
Sabra16G0238400 Salix brachista HOM05D004670 ORTHO05D008020 1.4e-79 301.6 599 53.1
Gorai.013G250400 Gossypium raimondii HOM05D004670 ORTHO05D008020 2.5e-79 300.8 500 59.6
COL.COLO4_09284 Corchorus olitorius HOM05D004670 ORTHO05D008020 4.2e-79 300.1 498 57.2
Gohir.D13G219500 Gossypium hirsutum HOM05D004670 ORTHO05D008020 3.6e-78 297.0 500 56.6
Rhsim05G0163600 Rhododendron simsii HOM05D004670 ORTHO05D008020 5.1e-77 293.1 299 51.8
CSS0027504 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 1.1e-76 292.0 434 42.4
CSS0030730 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 1.1e-76 292.0 434 42.4
CiPaw.07G084800 Carya illinoinensis HOM05D004670 ORTHO05D008020 3.3e-76 290.4 541 53.4
Prupe.6G365500 Prunus persica HOM05D004670 ORTHO05D008020 3.3e-76 290.4 295 52.5
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 5.7e-76 289.7 596 52.9
Sed0002677 Sechium edule HOM05D004670 ORTHO05D008020 9.7e-76 288.9 603 48.1
Manes.13G000200 Manihot esculenta HOM05D004670 ORTHO05D008020 4.8e-75 286.6 287 50.5
QL10p044086 Quercus lobata HOM05D004670 ORTHO05D008020 6.3e-75 286.2 364 45.6
Ciclev10004046m.g Citrus clementina HOM05D004670 ORTHO05D008020 1.1e-74 285.4 586 51.7
TAR362G1162 Trochodendron aralioides HOM05D004670 ORTHO05D008020 1.5e-73 281.6 462 56.7
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 1.1e-71 275.4 479 58.0
Nn1g09528 Nelumbo nucifera HOM05D004670 ORTHO05D008020 1.5e-71 275.0 396 42.2
EL10Ac7g17697 Beta vulgaris HOM05D004670 ORTHO05D008020 9.4e-71 272.3 602 47.7
Glyma.15G017400 Glycine max HOM05D004670 ORTHO05D008020 1.6e-70 271.6 452 56.9
EL10Ac4g10032 Beta vulgaris HOM05D004670 ORTHO05D008020 2.1e-70 271.2 597 48.7
AUR62025405 Chenopodium quinoa HOM05D004670 ORTHO05D008020 3.6e-70 270.4 561 49.6
Nitab4.5_0001348g0230 Nicotiana tabacum HOM05D004670 ORTHO05D008020 3.6e-70 270.4 576 50.9
Phvul.008G212400 Phaseolus vulgaris HOM05D004670 ORTHO05D008020 6.1e-70 269.6 471 54.4
Sc16g0010690 Simmondsia chinensis HOM05D004670 ORTHO05D008020 1.8e-69 268.1 601 48.9
VMungo0647G0492 Vigna mungo HOM05D004670 ORTHO05D008020 6.7e-69 266.2 451 56.8
Nitab4.5_0008751g0030 Nicotiana tabacum HOM05D004670 ORTHO05D008020 1.1e-68 265.4 487 52.6
AUR62008838 Chenopodium quinoa HOM05D004670 ORTHO05D008020 7.4e-68 262.7 537 50.8
SHI13694 Sapria himalayana HOM05D004670 ORTHO05D008020 7.4e-68 262.7 330 43.6
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 2.2e-67 261.2 467 48.2
CsaV3_2G010440 Cucumis sativus L. HOM05D004670 ORTHO05D008020 4.8e-67 260.0 537 52.5
Peaxi162Scf00066g00021 Petunia axillaris HOM05D004670 ORTHO05D008020 6.3e-67 259.6 575 48.5
Eucgr.B01443 Eucalyptus grandis HOM05D004670 ORTHO05D008020 1.1e-66 258.8 448 56.0
PGSC0003DMG400006026 Solanum tuberosum HOM05D004670 ORTHO05D008020 1.1e-66 258.8 598 46.2
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 1.8e-66 258.1 568 48.4
MBI07_g36706_MAGBIO Magnolia biondii HOM05D004670 ORTHO05D008020 5.3e-66 256.5 459 54.7
Eucgr.L01231 Eucalyptus grandis HOM05D004670 ORTHO05D008020 7.0e-66 256.1 499 52.5
Medtr3g081310 Medicago truncatula HOM05D004670 ORTHO05D008020 7.0e-66 256.1 491 56.2
Sopen11g001140 Solanum pennellii HOM05D004670 ORTHO05D008020 7.0e-66 256.1 610 45.6
Ah.06g195210 Amaranthus hybridus HOM05D004670 ORTHO05D008020 1.6e-65 255.0 519 49.7
Glyma.13G356700 Glycine max HOM05D004670 ORTHO05D008020 1.6e-65 255.0 478 54.2
Aqoxy3G03703 Aquilegia oxysepala HOM05D004670 ORTHO05D008020 4.5e-65 253.4 462 48.3
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 5.9e-65 253.1 594 47.6
Solyc11g005140.1 Solanum lycopersicum HOM05D004670 ORTHO05D008020 1.3e-64 251.9 611 45.2
AUR62044648 Chenopodium quinoa HOM05D004670 ORTHO05D008020 8.5e-64 249.2 394 40.1
TPR.G23340 Trifolium pratense HOM05D004670 ORTHO05D008020 2.5e-63 247.7 597 49.6
CDE06G0776 Ceratophyllum demersum HOM05D004670 ORTHO05D008020 3.2e-63 247.3 430 37.2
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 5.5e-63 246.5 419 36.5
CAN.G716.1 Capsicum annuum HOM05D004670 ORTHO05D008020 1.2e-62 245.4 572 46.3
Migut.C01066 Erythranthe guttata HOM05D004670 ORTHO05D008020 2.1e-62 244.6 318 42.8
Oeu040399.1 Olea europaea HOM05D004670 ORTHO05D008020 8.0e-62 242.7 399 39.3
FAN14G3835 Fragaria x ananassa HOM05D004670 ORTHO05D008020 6.8e-61 239.6 613 49.8
FvH4_6g27990 Fragaria vesca HOM05D004670 ORTHO05D008020 8.8e-61 239.2 595 50.6
Lsat_1_v5_gn_7_7580 Lactuca sativa HOM05D004670 ORTHO05D008020 8.8e-61 239.2 612 46.1
PGR119G2020 Punica granatum HOM05D004670 ORTHO05D008020 4.4e-60 236.9 458 53.1
arahy.Tifrunner.gnm1.ann1.H9JUXY Arachis hypogaea HOM05D004670 ORTHO05D008020 1.3e-59 235.3 480 51.2
RcHm_v2.0_Chr2g0131651 Rosa chinensis HOM05D004670 ORTHO05D008020 1.3e-59 235.3 586 50.9
DCAR_024376 Daucus carota HOM05D004670 ORTHO05D008020 1.7e-59 235.0 483 53.0
MSTRG.25359 Avicennia marina HOM05D004670 ORTHO05D008020 2.2e-59 234.6 431 38.5
Lj2g0025819 Lotus japonicus HOM05D004670 ORTHO05D008020 3.7e-59 233.8 490 53.1
SalBow7G4343 Salvia bowleyana HOM05D004670 ORTHO05D008020 1.4e-58 231.9 253 45.1
SalBow7G3652 Salvia bowleyana HOM05D004670 ORTHO05D008020 3.1e-58 230.7 253 45.1
Cc10_g12810 Coffea canephora HOM05D004670 ORTHO05D008020 4.1e-58 230.3 619 46.7
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 4.5e-57 226.9 458 33.6
ECA236G4653 Erigeron canadensis HOM05D004670 ORTHO05D008020 2.2e-56 224.6 493 50.9
PSO017G2252 Papaver somniferum HOM05D004670 ORTHO05D008020 2.5e-55 221.1 423 34.8
PSO675G7837 Papaver somniferum HOM05D004670 ORTHO05D008020 8.0e-54 216.1 424 34.2
ATR0743G160 Amborella trichopoda HOM05D004670 ORTHO05D008020 1.8e-53 214.9 287 41.1
Lalb_Chr13g0290441 Lupinus albus HOM05D004670 ORTHO05D008020 3.0e-53 214.2 497 44.7
HanXRQChr02g0056371 Helianthus annuus HOM05D004670 ORTHO05D008020 1.5e-52 211.8 503 49.3
ECA246G0724 Erigeron canadensis HOM05D004670 ORTHO05D008020 4.9e-51 206.8 524 47.7
HanXRQChr16g0532601 Helianthus annuus HOM05D004670 ORTHO05D008020 1.1e-50 205.7 608 44.4
Cpa.g.sc127.45 Carica papaya HOM05D004670 ORTHO05D008020 1.6e-49 201.8 615 44.7
HPP92_012838 Vanilla planifolia HOM05D004670 ORTHO05D008020 3.8e-48 197.2 349 36.1
Dinv17144 Davidia involucrata HOM05D004670 ORTHO05D008020 1.2e-46 192.2 246 42.7
Zm00001eb144640 Zea mays HOM05D004670 ORTHO05D008020 5.4e-42 176.8 278 36.0
PGR119G2157 Punica granatum HOM05D004670 ORTHO05D008020 1.2e-36 159.1 249 35.7
Lj6g0018960 Lotus japonicus HOM05D004670 ORTHO05D008020 2.2e-35 154.8 477 46.3
Thecc.09G224400 Theobroma cacao HOM05D004670 ORTHO05D008020 1.1e-34 152.5 269 36.4
AUR62000265 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.3e-29 134.8 560 25.7
SEGI_06910 Sequoiadendron giganteum HOM05D004670 ORTHO05D008020 9.8e-28 129.4 281 28.1
CSS0025547 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 1.4e-26 125.6 264 33.7
TPR.G5228 Trifolium pratense HOM05D002798 ORTHO05D003052 2.3e-24 118.2 268 34.0
Cpa.g.sc35.62 Carica papaya HOM05D004670 ORTHO05D022223 8.6e-24 116.3 322 30.7
TPR.G17089 Trifolium pratense HOM05D004670 ORTHO05D014137 2.5e-23 114.8 268 34.0
Medtr5g092030 Medicago truncatula HOM05D004670 ORTHO05D014137 1.1e-21 109.4 353 29.2
TPR.G25089 Trifolium pratense HOM05D004670 ORTHO05D014137 5.2e-21 107.1 262 32.1
Medtr5g088900 Medicago truncatula HOM05D004670 ORTHO05D014137 2.9e-19 101.3 262 30.9
AUR62006613 Chenopodium quinoa HOM05D004670 ORTHO05D008020 4.6e-17 94.0 175 34.3
AUR62008837 Chenopodium quinoa HOM05D004670 ORTHO05D008020 5.6e-15 87.0 87 52.9
TPR.G5188 Trifolium pratense HOM05D004670 ORTHO05D008020 1.6e-14 85.5 180 34.4
Medtr8g105355 Medicago truncatula HOM05D004670 ORTHO05D014137 3.6e-14 84.3 247 31.2
Medtr8g105450 Medicago truncatula HOM05D004670 ORTHO05D014137 3.6e-14 84.3 247 31.2
Cpa.g.c31883 Carica papaya HOM05D004670 ORTHO05D022223 6.2e-14 83.6 121 37.2
AL2G20210 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 3.8e-11 74.3 108 46.3
Nitab4.5_0003027g0060 Nicotiana tabacum HOM05D006218 ORTHO05D007338 6.6e-08 63.5 214 23.4
Potri.006G200800 Populus trichocarpa HOM05D006596 ORTHO05D008497 3.3e-07 61.2 262 21.8
TWI39G0099 Tripterygium wilfordii HOM05D006218 ORTHO05D007338 3.3e-07 61.2 189 27.5
QL02p015096 Quercus lobata HOM05D006218 ORTHO05D007338 9.6e-07 59.7 217 25.8
AUR62044649 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.6e-06 58.9 46 60.9
Ca_01065_v3 Cicer arietinum L. HOM05D000891 ORTHO05D000761 1.6e-06 58.9 141 30.5
CAN.G1202.7 Capsicum annuum HOM05D006218 ORTHO05D007338 2.1e-06 58.5 166 24.1
Hma1.2p1_1765F.1_g301480 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 2.1e-06 58.5 118 31.4
VMungo1080G1842 Vigna mungo HOM05D004670 ORTHO05D014137 2.1e-06 58.5 48 56.2
Gohir.D13G073400 Gossypium hirsutum HOM05D000001 ORTHO05D010176 2.8e-06 58.2 137 30.7
Gorai.013G084100 Gossypium raimondii HOM05D000001 ORTHO05D010176 2.8e-06 58.2 137 30.7
TPR.G10813 Trifolium pratense HOM05D004670 ORTHO05D008020 3.6e-06 57.8 71 40.8
BolC7t43164H Brassica oleracea HOM05D006218 ORTHO05D007338 6.2e-06 57.0 216 24.1
Sc09g0001040 Simmondsia chinensis HOM05D006596 ORTHO05D008497 6.2e-06 57.0 229 22.7
TWI75G1111 Tripterygium wilfordii HOM05D008810 ORTHO05D010971 6.2e-06 57.0 249 24.1
Ah.03g138540 Amaranthus hybridus HOM05D007145 ORTHO05D008952 8.1e-06 56.6 251 22.7
CiPaw.08G075100 Carya illinoinensis HOM05D006218 ORTHO05D007338 8.1e-06 56.6 200 26.0
Medtr5g088510 Medicago truncatula HOM05D004783 ORTHO05D005581 8.1e-06 56.6 117 28.2


User provided reference genes

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