Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 0.0e+00 1186.8 654 100.0
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 1.1e-260 903.3 656 78.0
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 2.5e-164 583.2 664 55.7
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 5.6e-156 555.4 663 56.1
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 7.2e-127 458.8 646 48.6
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 1.2e-92 345.1 693 40.1
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 1.5e-92 344.7 644 41.9
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 2.2e-91 340.9 644 41.8
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 1.6e-89 334.7 645 41.6
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 2.0e-84 317.8 645 40.2
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 9.8e-84 315.5 648 39.5
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 2.2e-83 314.3 650 40.3
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 2.7e-81 307.4 646 39.6
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 1.3e-75 288.5 649 38.4
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 3.9e-72 276.9 322 54.7
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 5.1e-72 276.6 322 54.7
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 2.4e-69 267.7 641 38.5
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 1.3e-67 261.9 647 37.9
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 1.3e-67 261.9 647 37.9
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 1.9e-66 258.1 400 46.8
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 6.2e-62 243.0 651 37.5
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 5.3e-61 240.0 687 33.9
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 4.4e-60 236.9 652 35.3
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 2.1e-57 228.0 371 45.3
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 3.5e-49 200.7 369 42.5
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 3.0e-48 197.6 364 39.8
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 1.9e-42 178.3 161 59.6
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 6.7e-32 143.3 243 42.0
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 7.4e-31 139.8 113 64.6
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 2.4e-29 134.8 277 34.3
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 6.9e-29 133.3 283 36.4
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 6.9e-29 133.3 283 36.4
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 9.0e-29 132.9 123 49.6
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 1.2e-28 132.5 122 50.0
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.3e-27 129.0 283 36.4
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 1.3e-27 129.0 142 47.9
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.2e-27 128.3 285 37.9
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 2.2e-27 128.3 255 37.6
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 2.9e-27 127.9 162 46.3
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 3.8e-27 127.5 126 55.6
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 5.0e-27 127.1 149 48.3
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 5.0e-27 127.1 170 43.5
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 6.5e-27 126.7 222 36.9
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 8.5e-27 126.3 657 27.9
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 1.1e-26 125.9 259 37.1
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 1.1e-26 125.9 289 37.4
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 1.9e-26 125.2 218 39.0
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 2.5e-26 124.8 427 30.0
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 4.2e-26 124.0 140 47.9
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 7.2e-26 123.2 240 35.4
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 9.4e-26 122.9 106 56.6
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 9.4e-26 122.9 333 32.7
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 2.1e-25 121.7 288 34.7
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 2.1e-25 121.7 103 55.3
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 3.6e-25 120.9 161 46.6
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 4.6e-25 120.6 160 41.9
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 6.1e-25 120.2 126 51.6
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 7.9e-25 119.8 140 45.0
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 7.9e-25 119.8 274 33.2
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 1.4e-24 119.0 266 33.8
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 1.8e-24 118.6 397 29.7
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 2.3e-24 118.2 139 48.2
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 3.0e-24 117.9 163 41.7
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 3.0e-24 117.9 405 30.4
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 3.0e-24 117.9 158 45.6
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 3.9e-24 117.5 279 32.3
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 3.9e-24 117.5 102 54.9
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 3.9e-24 117.5 285 39.3
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 5.1e-24 117.1 223 35.9
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 8.8e-24 116.3 165 45.5
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 8.8e-24 116.3 165 44.8
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 2.5e-23 114.8 221 38.5
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 3.3e-23 114.4 243 33.7
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 3.3e-23 114.4 126 48.4
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 4.3e-23 114.0 173 39.3
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 7.4e-23 113.2 129 48.8
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 9.7e-23 112.8 283 34.6
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 9.7e-23 112.8 293 31.7
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 9.7e-23 112.8 151 42.4
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 1.7e-22 112.1 273 34.4
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 1.7e-22 112.1 124 50.8
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 2.2e-22 111.7 291 30.9
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 2.2e-22 111.7 259 34.7
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 2.2e-22 111.7 259 34.7
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 2.8e-22 111.3 258 34.5
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 2.8e-22 111.3 209 39.2
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 4.8e-22 110.5 125 48.8
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 4.8e-22 110.5 210 40.0
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 6.3e-22 110.2 388 28.6
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 1.4e-21 109.0 128 45.3
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 1.4e-21 109.0 267 34.8
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 1.8e-21 108.6 145 43.4
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 2.4e-21 108.2 269 35.7
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 3.1e-21 107.8 132 40.2
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 9.1e-21 106.3 296 32.8
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 1.2e-20 105.9 229 38.4
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 2.6e-20 104.8 491 29.5
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 2.6e-20 104.8 151 42.4
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 3.4e-20 104.4 241 36.1
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 7.7e-20 103.2 225 35.6
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 7.7e-20 103.2 162 42.0
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 1.0e-19 102.8 156 39.7
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 1.0e-19 102.8 103 52.4
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.7e-19 102.1 652 25.0
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 2.2e-19 101.7 210 37.1
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 2.2e-19 101.7 231 32.5
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 3.8e-19 100.9 269 36.1
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 5.0e-19 100.5 272 30.9
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 5.0e-19 100.5 272 30.9
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 8.5e-19 99.8 158 39.9
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 8.5e-19 99.8 198 38.9
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 1.4e-18 99.0 286 31.8
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 1.9e-18 98.6 223 31.8
BcaC08g43040 Brassica carinata HOM05D010442 ORTHO05D010690 5.5e-18 97.1 128 46.9
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 9.4e-18 96.3 127 38.6
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 1.2e-17 95.9 452 28.3
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 1.6e-17 95.5 432 28.9
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 1.6e-17 95.5 412 26.7
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 2.1e-17 95.1 130 42.3
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 2.1e-17 95.1 271 33.2
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 2.1e-17 95.1 238 32.8
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 3.6e-17 94.4 241 32.8
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 4.7e-17 94.0 299 29.8
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 4.7e-17 94.0 382 29.6
BolC6t35423H Brassica oleracea HOM05D010442 ORTHO05D010690 2.3e-16 91.7 120 47.5
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 3.0e-16 91.3 270 33.3
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 1.1e-15 89.4 410 29.3
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.7e-14 85.5 253 32.4
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 2.8e-14 84.7 404 29.0
C06p03000 Brassica napus HOM05D010442 ORTHO05D010690 8.2e-14 83.2 172 37.8
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 8.2e-14 83.2 161 33.5
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 1.1e-13 82.8 395 29.9
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 7.0e-13 80.1 267 27.3
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 4.5e-12 77.4 98 40.8
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 2.2e-11 75.1 155 32.3
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 4.2e-10 70.9 423 24.8
A06p04460 Brassica napus HOM05D010442 ORTHO05D010690 7.2e-10 70.1 169 33.7
Medtr3g092440 Medicago truncatula HOM05D004833 ORTHO05D005671 1.6e-09 68.9 114 40.4
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 3.6e-09 67.8 49 59.2
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 4.7e-09 67.4 111 33.3
SalBow5G1669 Salvia bowleyana HOM05D004938 ORTHO05D006035 4.7e-09 67.4 146 30.8
SalBow5G2418 Salvia bowleyana HOM05D004938 ORTHO05D006035 4.7e-09 67.4 146 30.8
Potri.008G149700 Populus trichocarpa HOM05D004938 ORTHO05D006035 8.8e-08 63.2 145 33.8
ClCG06G005970 Citrullus lanatus HOM05D004938 ORTHO05D006035 1.5e-07 62.4 145 34.5
Sabra10G0051800 Salix brachista HOM05D004938 ORTHO05D006035 2.6e-07 61.6 145 33.8
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 3.3e-07 61.2 97 38.1
AagrBONN_evm.TU.Sc2ySwM_368.3218 Anthoceros agrestis HOM05D004833 ORTHO05D005671 4.4e-07 60.8 95 35.8
Potri.010G091500 Populus trichocarpa HOM05D004938 ORTHO05D006035 4.4e-07 60.8 142 31.0
MELO3C014494.2 Cucumis melo HOM05D004938 ORTHO05D006035 5.7e-07 60.5 145 32.4
Lj1g0006253 Lotus japonicus HOM05D004938 ORTHO05D006035 5.7e-07 60.5 128 34.4
GSVIVG01017919001 Vitis vinifera HOM05D004938 ORTHO05D006035 5.7e-07 60.5 146 33.6
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 7.4e-07 60.1 41 63.4
MD16G1187600 Malus domestica HOM05D004938 ORTHO05D006035 7.4e-07 60.1 145 32.4
Manes.03G181800 Manihot esculenta HOM05D004938 ORTHO05D006035 7.4e-07 60.1 145 31.7
PRCOL_00002026 Prasinoderma coloniale HOM05D004833 ORTHO05D005671 7.4e-07 60.1 111 35.1
Manes.15G025800 Manihot esculenta HOM05D004938 ORTHO05D006035 9.7e-07 59.7 145 31.0
Psat4g211200 Pisum sativum HOM05D004938 ORTHO05D006035 9.7e-07 59.7 149 32.2
TPR.G38053 Trifolium pratense HOM05D004938 ORTHO05D006035 9.7e-07 59.7 147 33.3
CsaV3_6G038300 Cucumis sativus L. HOM05D004938 ORTHO05D006035 1.3e-06 59.3 145 32.4
MD13G1186700 Malus domestica HOM05D004938 ORTHO05D006035 1.3e-06 59.3 145 31.7
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 1.3e-06 59.3 500 24.4
CiPaw.02G094500 Carya illinoinensis HOM05D004938 ORTHO05D006035 1.7e-06 58.9 145 32.4
Ca_24383_v3 Cicer arietinum L. HOM05D004938 ORTHO05D006035 1.7e-06 58.9 149 32.2
Glyma.01G239700 Glycine max HOM05D004938 ORTHO05D006035 1.7e-06 58.9 126 34.9
Phvul.002G047600 Phaseolus vulgaris HOM05D004938 ORTHO05D006035 1.7e-06 58.9 145 32.4
TWI73G0197 Tripterygium wilfordii HOM05D004938 ORTHO05D006035 2.2e-06 58.5 145 32.4
VMungo1215G0596 Vigna mungo HOM05D004938 ORTHO05D006035 2.2e-06 58.5 145 32.4
AL6G30760 Arabidopsis lyrata HOM05D004938 ORTHO05D006035 2.8e-06 58.2 145 31.0
Migut.N00168 Erythranthe guttata HOM05D004938 ORTHO05D006035 2.8e-06 58.2 146 29.5
Lj6C597G4 Lonicera japonica HOM05D000104 ORTHO05D006391 2.8e-06 58.2 145 32.4
Oeu030329.2 Olea europaea HOM05D004938 ORTHO05D006035 2.8e-06 58.2 146 32.2
Sp6g25140 Schrenkiella parvula HOM05D004938 ORTHO05D006035 2.8e-06 58.2 145 31.0
Atru.chr4.2523 Acer truncatum HOM05D004938 ORTHO05D006035 3.7e-06 57.8 151 35.1
Glyma.11G004000 Glycine max HOM05D004938 ORTHO05D006035 3.7e-06 57.8 128 33.6
Aa31LG11G10410 Aethionema arabicum HOM05D004938 ORTHO05D006035 6.3e-06 57.0 142 31.0
Duzib212G0302 Durio zibethinus HOM05D004938 ORTHO05D006035 6.3e-06 57.0 115 35.7
Medtr5g005810 Medicago truncatula HOM05D004938 ORTHO05D006035 6.3e-06 57.0 149 30.9
Sabra08G0113800 Salix brachista HOM05D004938 ORTHO05D006035 6.3e-06 57.0 145 32.4
AT5G19280 Arabidopsis thaliana HOM05D004938 ORTHO05D006035 8.2e-06 56.6 145 31.0
arahy.Tifrunner.gnm1.ann1.AAS7XX Arachis hypogaea HOM05D004938 ORTHO05D006035 8.2e-06 56.6 145 33.1
arahy.Tifrunner.gnm1.ann1.CBXD69 Arachis hypogaea HOM05D004938 ORTHO05D006035 8.2e-06 56.6 145 33.1
Thhalv10013082m.g Eutrema salsugineum HOM05D004938 ORTHO05D006035 8.2e-06 56.6 145 31.0
QL06p003549 Quercus lobata HOM05D004938 ORTHO05D006035 8.2e-06 56.6 145 31.0


User provided reference genes

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