Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0123 Capsella rubella HOM05D006882 ORTHO05D008688 1.8e-63 245.7 125 100.0
AL3G11350 Arabidopsis lyrata HOM05D006882 ORTHO05D008688 8.2e-48 193.7 128 82.0
CARHR076080 Cardamine hirsuta HOM05D006882 ORTHO05D008688 1.8e-47 192.6 128 81.2
Sp3g01180 Schrenkiella parvula HOM05D006882 ORTHO05D008688 4.7e-43 177.9 128 77.3
AT3G02120 Arabidopsis thaliana HOM05D006882 ORTHO05D008688 1.2e-41 173.3 129 74.4
Aa31LG5G12650 Aethionema arabicum HOM05D006882 ORTHO05D008688 2.4e-31 139.0 128 60.9
BraA09t39034Z Brassica rapa HOM05D006882 ORTHO05D008688 9.2e-31 137.1 127 62.2
A09p35030 Brassica napus HOM05D006882 ORTHO05D008688 2.7e-30 135.6 127 62.2
BcaB07g32783 Brassica carinata HOM05D006882 ORTHO05D008688 3.5e-30 135.2 111 69.4
BcaC05g27151 Brassica carinata HOM05D006882 ORTHO05D008688 1.1e-28 130.2 126 61.9
C05p30380 Brassica napus HOM05D006882 ORTHO05D008688 1.1e-28 130.2 126 61.9
BolC5t31777H Brassica oleracea HOM05D006882 ORTHO05D008688 1.1e-28 130.2 126 61.9
THA.LOC104822332 Tarenaya hassleriana HOM05D006882 ORTHO05D008688 2.8e-27 125.6 127 60.6
Gorai.007G082700 Gossypium raimondii HOM05D006882 ORTHO05D008688 3.5e-22 108.6 116 53.4
Gohir.D11G077000 Gossypium hirsutum HOM05D006882 ORTHO05D008688 6.0e-22 107.8 105 56.2
Thecc.04G095700 Theobroma cacao HOM05D006882 ORTHO05D008688 1.7e-21 106.3 100 56.0
CiPaw.03G088500 Carya illinoinensis HOM05D006882 ORTHO05D008688 2.3e-21 105.9 117 55.6
COL.COLO4_04934 Corchorus olitorius HOM05D006882 ORTHO05D008688 2.3e-21 105.9 115 51.3
TWI60G1503 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 5.0e-21 104.8 111 54.1
Gohir.A11G072700 Gossypium hirsutum HOM05D006882 ORTHO05D008688 8.6e-21 104.0 116 51.7
Duzib187G0261 Durio zibethinus HOM05D006882 ORTHO05D008688 2.5e-20 102.4 116 54.3
GSVIVG01032906001 Vitis vinifera HOM05D006882 ORTHO05D008688 8.0e-19 97.4 115 51.3
Cfa007668 Carpinus fangiana HOM05D006882 ORTHO05D008688 1.1e-18 97.1 99 57.6
Duzib147G0673 Durio zibethinus HOM05D006882 ORTHO05D008688 1.1e-18 97.1 71 69.0
Duzib264G0735 Durio zibethinus HOM05D006882 ORTHO05D008688 1.4e-18 96.7 101 51.5
Haze_14430 Corylus avellana HOM05D006882 ORTHO05D008688 5.2e-18 94.7 99 56.6
QL02p067584 Quercus lobata HOM05D006882 ORTHO05D008688 6.8e-18 94.4 99 55.6
Atru.chr8.430 Acer truncatum HOM05D006882 ORTHO05D008688 2.6e-17 92.4 105 49.5
Gohir.D09G008650 Gossypium hirsutum HOM05D006882 ORTHO05D008688 2.6e-17 92.4 77 59.7
Dinv34941 Davidia involucrata HOM05D006882 ORTHO05D008688 1.3e-16 90.1 114 48.2
Eucgr.I02034 Eucalyptus grandis HOM05D006882 ORTHO05D008688 1.3e-16 90.1 102 49.0
Gorai.006G010400 Gossypium raimondii HOM05D006882 ORTHO05D008688 1.3e-16 90.1 77 58.4
vmacro05638 Vaccinium macrocarpon HOM05D006882 ORTHO05D008688 2.9e-16 89.0 116 50.0
CANSAT64G2010 Cannabis sativa HOM05D006882 ORTHO05D008688 4.9e-16 88.2 119 49.6
TWI34G0355 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 1.1e-15 87.0 79 60.8
AUR62038673 Chenopodium quinoa HOM05D006882 ORTHO05D008688 1.4e-15 86.7 62 61.3
Potri.017G094200 Populus trichocarpa HOM05D006882 ORTHO05D008688 1.4e-15 86.7 104 46.2
TAR371G1018 Trochodendron aralioides HOM05D006882 ORTHO05D008688 1.9e-15 86.3 107 50.5
Manes.01G096000 Manihot esculenta HOM05D006882 ORTHO05D008688 2.4e-15 85.9 78 55.1
Cc07_g04230 Coffea canephora HOM05D006882 ORTHO05D008688 3.2e-15 85.5 121 47.9
PGR004G1649 Punica granatum HOM05D006882 ORTHO05D008688 3.2e-15 85.5 117 46.2
Hma1.2p1_0481F.1_g162213 Hydrangea macrophylla HOM05D006882 ORTHO05D008688 4.1e-15 85.1 93 52.7
Sabra17G0083000 Salix brachista HOM05D006882 ORTHO05D008688 4.1e-15 85.1 114 43.0
Prupe.3G254900 Prunus persica HOM05D006882 ORTHO05D008688 7.0e-15 84.3 124 46.0
VMungo0464G1672 Vigna mungo HOM05D006882 ORTHO05D008688 7.0e-15 84.3 115 45.2
arahy.Tifrunner.gnm1.ann1.YR6PCG Arachis hypogaea HOM05D006882 ORTHO05D008688 1.2e-14 83.6 119 47.1
AUR62018188 Chenopodium quinoa HOM05D006882 ORTHO05D008688 1.2e-14 83.6 62 58.1
Ciclev10013137m.g Citrus clementina HOM05D006882 ORTHO05D008688 1.2e-14 83.6 110 48.2
Rhsim10G0049600 Rhododendron simsii HOM05D006882 ORTHO05D008688 1.2e-14 83.6 109 46.8
arahy.Tifrunner.gnm1.ann1.PJ6ZH1 Arachis hypogaea HOM05D006882 ORTHO05D008688 2.7e-14 82.4 119 46.2
Gohir.A09G009600 Gossypium hirsutum HOM05D006882 ORTHO05D008688 3.5e-14 82.0 77 57.1
SalBow1G1386 Salvia bowleyana HOM05D006882 ORTHO05D008688 4.6e-14 81.6 64 65.6
SalBow1G4555 Salvia bowleyana HOM05D006882 ORTHO05D008688 4.6e-14 81.6 64 65.6
Glyma.13G056500 Glycine max HOM05D006882 ORTHO05D008688 6.0e-14 81.3 112 44.6
Manes.02G055100 Manihot esculenta HOM05D006882 ORTHO05D008688 6.0e-14 81.3 112 44.6
Ciclev10027312m.g Citrus clementina HOM05D006882 ORTHO05D008688 7.8e-14 80.9 69 62.3
MD09G1066800 Malus domestica HOM05D006882 ORTHO05D008688 7.8e-14 80.9 114 43.0
Glyma.19G030100 Glycine max HOM05D006882 ORTHO05D008688 1.0e-13 80.5 120 42.5
Potri.004G120200 Populus trichocarpa HOM05D006882 ORTHO05D008688 1.0e-13 80.5 70 55.7
TPR.G10007 Trifolium pratense HOM05D006882 ORTHO05D008688 1.3e-13 80.1 109 44.0
FvH4_6g46850 Fragaria vesca HOM05D006882 ORTHO05D008688 1.7e-13 79.7 105 45.7
FAN09G3572 Fragaria x ananassa HOM05D006882 ORTHO05D008688 1.7e-13 79.7 105 45.7
FAN14G0989 Fragaria x ananassa HOM05D006882 ORTHO05D008688 1.7e-13 79.7 105 45.7
Peaxi162Scf00166g00424 Petunia axillaris HOM05D006882 ORTHO05D008688 1.7e-13 79.7 128 43.8
Ciclev10003470m.g Citrus clementina HOM05D006882 ORTHO05D008688 2.3e-13 79.3 110 47.3
Lalb_Chr06g0174961 Lupinus albus HOM05D006882 ORTHO05D008688 2.3e-13 79.3 64 62.5
Cpa.g.sc14.176 Carica papaya HOM05D006882 ORTHO05D008688 3.0e-13 79.0 90 54.4
Ciclev10003349m.g Citrus clementina HOM05D006882 ORTHO05D008688 3.0e-13 79.0 69 60.9
Hund13139 Selenicereus undatus HOM05D006882 ORTHO05D008688 3.9e-13 78.6 117 44.4
Dinv33828 Davidia involucrata HOM05D006882 ORTHO05D008688 5.1e-13 78.2 65 61.5
Nitab4.5_0003841g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 8.6e-13 77.4 124 45.2
Phvul.004G037300 Phaseolus vulgaris HOM05D006882 ORTHO05D008688 8.6e-13 77.4 92 47.8
Oeu062161.1 Olea europaea HOM05D006882 ORTHO05D008688 1.1e-12 77.0 114 43.9
FAN02G1963 Fragaria x ananassa HOM05D006882 ORTHO05D008688 1.5e-12 76.6 124 44.4
FAN05G2472 Fragaria x ananassa HOM05D006882 ORTHO05D008688 1.5e-12 76.6 103 46.6
Sc14g0006330 Simmondsia chinensis HOM05D006882 ORTHO05D008688 1.5e-12 76.6 61 63.9
DCAR_025431 Daucus carota HOM05D006882 ORTHO05D008688 2.5e-12 75.9 97 45.4
RcHm_v2.0_Chr2g0165841 Rosa chinensis HOM05D006882 ORTHO05D008688 4.3e-12 75.1 124 43.5
ClCG07G016320 Citrullus lanatus HOM05D006882 ORTHO05D008688 7.3e-12 74.3 77 51.9
CsaV3_4G009150 Cucumis sativus L. HOM05D006882 ORTHO05D008688 7.3e-12 74.3 81 49.4
Glyma.01G085200 Glycine max HOM05D006882 ORTHO05D008688 7.3e-12 74.3 109 43.1
Psat1g068840 Pisum sativum HOM05D006882 ORTHO05D008688 9.5e-12 73.9 77 54.5
MSTRG.23884 Avicennia marina HOM05D006882 ORTHO05D008688 1.2e-11 73.6 107 43.0
MD17G1059700 Malus domestica HOM05D006882 ORTHO05D008688 3.6e-11 72.0 81 53.1
Migut.H00624 Erythranthe guttata HOM05D006882 ORTHO05D008688 4.7e-11 71.6 115 42.6
Lsat_1_v5_gn_2_90100 Lactuca sativa HOM05D006882 ORTHO05D008688 4.7e-11 71.6 98 50.0
Sopen02g033540 Solanum pennellii HOM05D006882 ORTHO05D008688 1.1e-10 70.5 87 47.1
PGSC0003DMG400001358 Solanum tuberosum HOM05D006882 ORTHO05D008688 1.1e-10 70.5 126 43.7
Ah.12g062710 Amaranthus hybridus HOM05D006882 ORTHO05D008688 1.8e-10 69.7 57 56.1
Lj2g0004633 Lotus japonicus HOM05D006882 ORTHO05D008688 1.8e-10 69.7 116 40.5
Solyc02g088830.4 Solanum lycopersicum HOM05D006882 ORTHO05D008688 1.8e-10 69.7 87 47.1
MSTRG.2998 Avicennia marina HOM05D006882 ORTHO05D008688 2.3e-10 69.3 124 41.9
Aqoxy3G00507 Aquilegia oxysepala HOM05D006882 ORTHO05D008688 3.1e-10 68.9 100 41.0
Sed0003732 Sechium edule HOM05D006882 ORTHO05D008688 3.1e-10 68.9 57 56.1
HanXRQChr07g0199771 Helianthus annuus HOM05D006882 ORTHO05D008688 1.2e-09 67.0 87 46.0
ECA238G0863 Erigeron canadensis HOM05D006882 ORTHO05D008688 2.0e-09 66.2 76 50.0
Ca_04305_v3 Cicer arietinum L. HOM05D006882 ORTHO05D008688 3.4e-09 65.5 124 38.7
PSO017G6201 Papaver somniferum HOM05D006882 ORTHO05D008688 4.4e-09 65.1 65 60.0
Medtr6g015280 Medicago truncatula HOM05D006882 ORTHO05D008688 1.3e-08 63.5 51 62.7
Peaxi162Scf00254g00028 Petunia axillaris HOM05D006882 ORTHO05D008688 3.7e-08 62.0 55 65.5
Peaxi162Scf00298g00055 Petunia axillaris HOM05D006882 ORTHO05D008688 4.9e-08 61.6 116 41.4
ATR0177G043 Amborella trichopoda HOM05D006882 ORTHO05D008688 6.4e-08 61.2 53 58.5
CsaV3_5G014380 Cucumis sativus L. HOM05D006882 ORTHO05D008688 6.4e-08 61.2 58 50.0
Nn1g08730 Nelumbo nucifera HOM05D006882 ORTHO05D008688 6.4e-08 61.2 58 51.7
Medtr6g015260 Medicago truncatula HOM05D006882 ORTHO05D008688 4.1e-07 58.5 74 48.6
Peaxi162Scf00329g00037 Petunia axillaris HOM05D006882 ORTHO05D008688 5.4e-07 58.2 83 48.2
Peaxi162Scf00025g00208 Petunia axillaris HOM05D006882 ORTHO05D008688 1.6e-06 56.6 76 52.6


User provided reference genes

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