Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0111 Capsella rubella HOM05D005960 ORTHO05D007537 1.0e-265 919.5 457 100.0
AL3G11200 Arabidopsis lyrata HOM05D005960 ORTHO05D007537 8.5e-252 873.2 457 94.5
AT3G01060 Arabidopsis thaliana HOM05D005960 ORTHO05D007537 1.5e-251 872.5 457 94.1
Thhalv10020707m.g Eutrema salsugineum HOM05D005960 ORTHO05D007537 1.4e-249 865.9 457 93.9
Sp3g01070 Schrenkiella parvula HOM05D005960 ORTHO05D007537 2.0e-245 852.0 457 92.6
CARHR076010 Cardamine hirsuta HOM05D005960 ORTHO05D007537 5.9e-245 850.5 457 92.6
BNapus_Darmor_BZH_scaffold_113p00110 Brassica napus HOM05D005960 ORTHO05D007537 3.7e-239 831.2 459 90.6
BraA01t04634Z Brassica rapa HOM05D005960 ORTHO05D007537 8.3e-239 830.1 459 90.6
BNapus_Darmor_BZH_scaffold_97p00050 Brassica napus HOM05D005960 ORTHO05D007537 2.0e-237 825.5 458 89.7
Aa31LG5G12560 Aethionema arabicum HOM05D005960 ORTHO05D007537 5.0e-236 820.8 457 89.3
BolC1t05923H Brassica oleracea HOM05D005960 ORTHO05D007537 5.0e-236 820.8 458 89.1
THA.LOC104802965 Tarenaya hassleriana HOM05D005960 ORTHO05D007537 2.1e-226 788.9 457 86.7
BcaC09g47681 Brassica carinata HOM05D005960 ORTHO05D007537 3.9e-220 768.1 458 84.7
Manes.01G099100 Manihot esculenta HOM05D005960 ORTHO05D007537 3.1e-209 731.9 453 81.9
QL02p039477 Quercus lobata HOM05D005960 ORTHO05D007537 2.0e-208 729.2 455 80.9
Atru.chr8.386 Acer truncatum HOM05D005960 ORTHO05D007537 3.4e-208 728.4 455 81.1
Eucgr.I01985 Eucalyptus grandis HOM05D005960 ORTHO05D007537 4.4e-208 728.0 457 79.4
PGR004G2687 Punica granatum HOM05D005960 ORTHO05D007537 4.4e-208 728.0 462 80.1
QL02p039732 Quercus lobata HOM05D005960 ORTHO05D007537 9.9e-208 726.9 455 80.9
COL.COLO4_21375 Corchorus olitorius HOM05D005960 ORTHO05D007537 2.2e-207 725.7 454 79.7
Cfa007624 Carpinus fangiana HOM05D005960 ORTHO05D007537 6.4e-207 724.2 453 81.2
Actinidia01975 Actinidia chinensis HOM05D005960 ORTHO05D007537 1.1e-206 723.4 457 80.1
TWI60G0302 Tripterygium wilfordii HOM05D005960 ORTHO05D007537 4.2e-206 721.5 455 81.1
Cpa.g.sc14.144 Carica papaya HOM05D005960 ORTHO05D007537 5.4e-206 721.1 459 79.7
TAR371G0518 Trochodendron aralioides HOM05D005960 ORTHO05D007537 1.2e-205 719.9 455 80.2
CsaV3_5G038400 Cucumis sativus L. HOM05D005960 ORTHO05D007537 2.1e-205 719.2 451 80.0
Potri.017G090100 Populus trichocarpa HOM05D005960 ORTHO05D007537 6.0e-205 717.6 454 80.0
GSVIVG01011490001 Vitis vinifera HOM05D005960 ORTHO05D007537 6.0e-205 717.6 451 80.0
MELO3C022021.2 Cucumis melo HOM05D005960 ORTHO05D007537 1.7e-204 716.1 451 79.6
MBI16_g15532_MAGBIO Magnolia biondii HOM05D005960 ORTHO05D007537 1.7e-204 716.1 457 79.6
CSS0005506 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 3.9e-204 714.9 458 79.0
HanXRQChr14g0448721 Helianthus annuus HOM05D005960 ORTHO05D007537 3.9e-204 714.9 458 79.3
vmacro05665 Vaccinium macrocarpon HOM05D005960 ORTHO05D007537 3.9e-204 714.9 456 78.5
CSS0003743 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 5.1e-204 714.5 458 78.8
ClCG11G004630 Citrullus lanatus HOM05D005960 ORTHO05D007537 5.1e-204 714.5 451 79.6
Thecc.04G090800 Theobroma cacao HOM05D005960 ORTHO05D007537 2.5e-203 712.2 455 78.0
Hma1.2p1_3044F.1_g332080 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 4.3e-203 711.4 456 79.2
CiPaw.04G058500 Carya illinoinensis HOM05D005960 ORTHO05D007537 5.6e-203 711.1 455 78.9
MD17G1056600 Malus domestica HOM05D005960 ORTHO05D007537 5.6e-203 711.1 457 79.0
RcHm_v2.0_Chr2g0166541 Rosa chinensis HOM05D005960 ORTHO05D007537 2.1e-202 709.1 457 77.9
CANSAT64G2728 Cannabis sativa HOM05D005960 ORTHO05D007537 2.8e-202 708.8 456 78.7
Rhsim10G0047200 Rhododendron simsii HOM05D005960 ORTHO05D007537 8.1e-202 707.2 475 75.8
Rhsim10G0046600 Rhododendron simsii HOM05D005960 ORTHO05D007537 1.4e-201 706.4 404 84.9
Duzib147G1008 Durio zibethinus HOM05D005960 ORTHO05D007537 3.1e-201 705.3 455 77.4
Gohir.A11G071600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 3.1e-201 705.3 453 78.1
Gorai.007G081300 Gossypium raimondii HOM05D005960 ORTHO05D007537 3.1e-201 705.3 453 78.4
Sabra17G0079200 Salix brachista HOM05D005960 ORTHO05D007537 5.3e-201 704.5 470 76.8
Ciclev10011697m.g Citrus clementina HOM05D005960 ORTHO05D007537 6.9e-201 704.1 454 79.3
FAN05G2671 Fragaria x ananassa HOM05D005960 ORTHO05D007537 9.0e-201 703.7 457 77.5
FvH4_6g47510 Fragaria vesca HOM05D005960 ORTHO05D007537 1.2e-200 703.4 455 77.6
Ca_04868_v3 Cicer arietinum L. HOM05D005960 ORTHO05D007537 1.5e-200 703.0 456 77.6
arahy.Tifrunner.gnm1.ann1.8N3EDT Arachis hypogaea HOM05D005960 ORTHO05D007537 7.6e-200 700.7 462 77.5
Aqoxy3G00406 Aquilegia oxysepala HOM05D005960 ORTHO05D007537 9.9e-200 700.3 455 76.7
Glyma.13G059000 Glycine max HOM05D005960 ORTHO05D007537 9.9e-200 700.3 455 77.8
Oeu000854.1 Olea europaea HOM05D005960 ORTHO05D007537 9.9e-200 700.3 474 76.4
Glyma.19G027400 Glycine max HOM05D005960 ORTHO05D007537 1.3e-199 699.9 456 77.9
AUR62042562 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.7e-199 699.5 447 79.0
Sed0006667 Sechium edule HOM05D005960 ORTHO05D007537 2.2e-199 699.1 453 78.1
Lj2g0023614 Lotus japonicus HOM05D005960 ORTHO05D007537 3.8e-199 698.4 455 78.5
VMungo0464G0831 Vigna mungo HOM05D005960 ORTHO05D007537 3.8e-199 698.4 455 77.8
arahy.Tifrunner.gnm1.ann1.7U9LX7 Arachis hypogaea HOM05D005960 ORTHO05D007537 8.4e-199 697.2 462 77.3
CAN.G734.6 Capsicum annuum HOM05D005960 ORTHO05D007537 1.1e-198 696.8 404 84.4
Phvul.004G033300 Phaseolus vulgaris HOM05D005960 ORTHO05D007537 1.1e-198 696.8 455 78.0
EL10Ac2g03055 Beta vulgaris HOM05D005960 ORTHO05D007537 1.9e-198 696.0 384 87.5
TPR.G26197 Trifolium pratense HOM05D005960 ORTHO05D007537 9.3e-198 693.7 452 77.2
Solyc03g013240.4 Solanum lycopersicum HOM05D005960 ORTHO05D007537 1.2e-197 693.3 380 87.9
Sopen03g016610 Solanum pennellii HOM05D005960 ORTHO05D007537 1.2e-197 693.3 380 87.9
Psat1g068640 Pisum sativum HOM05D005960 ORTHO05D007537 3.5e-197 691.8 456 77.4
Migut.H00653 Erythranthe guttata HOM05D005960 ORTHO05D007537 1.3e-196 689.9 453 77.0
DCAR_005553 Daucus carota HOM05D005960 ORTHO05D007537 1.8e-196 689.5 432 80.8
ECA238G1943 Erigeron canadensis HOM05D005960 ORTHO05D007537 6.7e-196 687.6 421 81.0
Haze_14472 Corylus avellana HOM05D005960 ORTHO05D007537 1.5e-195 686.4 521 70.2
Medtr6g013750 Medicago truncatula HOM05D005960 ORTHO05D007537 3.3e-195 685.3 453 76.4
PSO421G0059 Papaver somniferum HOM05D005960 ORTHO05D007537 1.3e-194 683.3 452 74.8
PSO013G0364 Papaver somniferum HOM05D005960 ORTHO05D007537 2.8e-194 682.2 454 74.7
Lalb_Chr06g0175111 Lupinus albus HOM05D005960 ORTHO05D007537 4.8e-194 681.4 416 80.5
Os05g0512200 Oryza sativa ssp. japonica HOM05D005960 ORTHO05D007537 1.4e-193 679.9 411 80.8
SalBow1G6551 Salvia bowleyana HOM05D005960 ORTHO05D007537 1.1e-190 670.2 469 74.2
Nn4g23343 Nelumbo nucifera HOM05D005960 ORTHO05D007537 3.5e-189 665.2 360 89.2
ATR0111G015 Amborella trichopoda HOM05D005960 ORTHO05D007537 5.1e-188 661.4 427 76.6
Lsat_1_v5_gn_2_87860 Lactuca sativa HOM05D005960 ORTHO05D007537 4.3e-187 658.3 461 73.8
unitig_736.g22244 Utricularia gibba HOM05D005960 ORTHO05D007537 2.1e-186 656.0 384 82.6
Peaxi162Scf00451g00429 Petunia axillaris HOM05D005960 ORTHO05D007537 1.2e-184 650.2 404 80.4
FAN02G1813 Fragaria x ananassa HOM05D005960 ORTHO05D007537 4.9e-183 644.8 355 87.9
Nitab4.5_0001637g0110 Nicotiana tabacum HOM05D005960 ORTHO05D007537 2.7e-181 639.0 408 78.9
Sc10g0003290 Simmondsia chinensis HOM05D005960 ORTHO05D007537 2.7e-181 639.0 367 83.9
Lj4C116G4 Lonicera japonica HOM05D005960 ORTHO05D007537 1.8e-177 626.3 465 70.5
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 1.9e-174 616.3 457 72.4
FAN14G4646 Fragaria x ananassa HOM05D005960 ORTHO05D007537 2.5e-174 615.9 455 70.3
SEGI_05647 Sequoiadendron giganteum HOM05D005960 ORTHO05D007537 1.2e-173 613.6 414 71.0
Prupe.3G258900 Prunus persica HOM05D005960 ORTHO05D007537 1.5e-171 606.7 330 89.4
Gohir.D11G075600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 6.9e-169 597.8 330 88.2
Mapoly0015s0039 Marchantia polymorpha HOM05D005960 ORTHO05D007537 3.0e-164 582.4 385 72.5
Pp3c2_13280 Physcomitrium patens HOM05D005960 ORTHO05D007537 4.8e-162 575.1 383 71.3
SMO335G0027 Selaginella moellendorffii HOM05D005960 ORTHO05D007537 2.2e-159 566.2 415 67.2
Actinidia01967 Actinidia chinensis HOM05D005960 ORTHO05D007537 2.0e-155 553.1 382 75.1
AagrBONN_evm.TU.Sc2ySwM_362.2259 Anthoceros agrestis HOM05D005960 ORTHO05D007537 7.0e-153 544.7 393 66.7
Nitab4.5_0005196g0010 Nicotiana tabacum HOM05D005960 ORTHO05D007537 2.6e-152 542.7 404 70.0
Cc07_g03890 Coffea canephora HOM05D005960 ORTHO05D007537 4.2e-150 535.4 355 77.2
Zm00001eb292620 Zea mays HOM05D005960 ORTHO05D007537 3.6e-149 532.3 357 76.2
AUR62018147 Chenopodium quinoa HOM05D005960 ORTHO05D007537 8.0e-149 531.2 365 74.8
CBR_g61504 Chara braunii HOM05D005960 ORTHO05D007537 2.2e-138 496.5 404 61.6
MSTRG.3021 Avicennia marina HOM05D005960 ORTHO05D007537 3.7e-138 495.7 277 86.6
HPP92_018459 Vanilla planifolia HOM05D005960 ORTHO05D007537 1.2e-136 490.7 338 73.1
Dinv11487 Davidia involucrata HOM05D005960 ORTHO05D007537 8.0e-125 451.4 318 74.2
CDE04G1831 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 1.8e-124 450.3 390 62.1
CDE07G2056 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 1.8e-124 450.3 293 74.4
Hma1.2p1_1813F.1_g303790 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 2.9e-122 443.0 235 89.4
Hma1.2p1_3044F.1_g332082 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 2.9e-122 443.0 235 89.4
TAR627G0454 Trochodendron aralioides HOM05D005960 ORTHO05D007537 4.1e-121 439.1 330 69.1
FAN09G3416 Fragaria x ananassa HOM05D005960 ORTHO05D007537 9.2e-121 438.0 404 58.9
Cre13.g562750 Chlamydomonas reinhardtii HOM05D005960 ORTHO05D007537 1.2e-112 411.0 412 50.0
MD09G1061300 Malus domestica HOM05D005960 ORTHO05D007537 2.7e-88 330.1 248 71.4
MCO03G230 Micromonas commoda HOM05D005960 ORTHO05D007537 1.9e-78 297.4 320 47.5
MCO05G128 Micromonas commoda HOM05D005960 ORTHO05D007537 1.6e-64 251.1 360 40.8
PRCOL_00002980 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 1.5e-59 234.6 402 36.1
PRCOL_00004151 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 2.8e-53 213.8 380 36.8
PRCOL_00003347 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 1.3e-50 204.9 349 35.5
CDE07G0145 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 6.5e-50 202.6 117 83.8
MCO08G069 Micromonas commoda HOM05D005960 ORTHO05D007537 1.2e-48 198.4 349 34.7
Cc07_g03900 Coffea canephora HOM05D005960 ORTHO05D007537 2.2e-45 187.6 104 85.6
MCO08G121 Micromonas commoda HOM05D005960 ORTHO05D007537 2.8e-45 187.2 363 32.2
AUR62018149 Chenopodium quinoa HOM05D005960 ORTHO05D007537 6.5e-42 176.0 98 85.7
Potri.004G125301 Populus trichocarpa HOM05D005960 ORTHO05D007537 5.2e-39 166.4 149 59.7
TPR.G22619 Trifolium pratense HOM05D005960 ORTHO05D007537 7.4e-38 162.5 153 60.8
EL10Ac2g03064 Beta vulgaris HOM05D005960 ORTHO05D007537 3.8e-34 150.2 96 80.2
Oeu061493.1 Olea europaea HOM05D005960 ORTHO05D007537 2.8e-21 107.5 51 88.2
PGSC0003DMG400033541 Solanum tuberosum HOM05D005960 ORTHO05D007537 3.4e-14 84.0 45 95.6
Zm00001eb030310 Zea mays HOM05D005960 ORTHO05D051632 2.1e-08 64.7 38 84.2
MCO08G023 Micromonas commoda HOM05D005960 ORTHO05D270145 3.6e-08 63.9 150 28.7
Zm00001eb250570 Zea mays HOM05D005960 ORTHO05D051632 4.7e-08 63.5 42 76.2


User provided reference genes

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