Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 1.5e-98 362.8 179 100.0
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 1.5e-66 256.5 187 75.9
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 3.3e-66 255.4 190 75.3
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 6.5e-62 241.1 195 71.3
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 8.4e-62 240.7 185 72.4
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 1.4e-56 223.4 187 68.4
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 1.4e-56 223.4 187 68.4
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 5.3e-56 221.5 186 68.3
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 5.3e-56 221.5 186 68.3
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 1.5e-55 219.9 186 67.7
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 2.6e-55 219.2 202 60.4
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 3.8e-54 215.3 196 61.7
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 1.9e-53 213.0 196 62.2
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 9.3e-53 210.7 189 64.0
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 1.6e-49 199.9 184 63.6
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 8.2e-49 197.6 188 62.8
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 6.9e-48 194.5 218 53.7
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 2.1e-44 183.0 191 57.1
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 2.0e-42 176.4 176 58.5
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 2.0e-42 176.4 214 51.4
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 9.7e-42 174.1 225 49.8
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 6.7e-35 151.4 234 44.0
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 6.3e-33 144.8 162 54.3
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 2.4e-32 142.9 213 45.1
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 1.9e-29 133.3 215 42.3
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 3.2e-29 132.5 156 50.6
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 1.2e-28 130.6 202 45.5
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 4.7e-28 128.6 169 47.9
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 8.0e-28 127.9 144 50.7
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 8.0e-28 127.9 148 52.0
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 1.8e-27 126.7 147 50.3
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 2.3e-27 126.3 187 42.8
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 3.0e-27 125.9 148 48.0
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 5.2e-27 125.2 172 44.8
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 5.2e-27 125.2 171 46.2
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 6.7e-27 124.8 185 45.9
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 1.1e-26 124.0 186 45.7
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 1.1e-26 124.0 185 41.6
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 2.0e-26 123.2 172 41.3
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 4.4e-26 122.1 144 47.9
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 4.4e-26 122.1 144 47.9
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 5.7e-26 121.7 190 42.6
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 5.7e-26 121.7 145 46.2
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 7.4e-26 121.3 176 43.8
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 7.4e-26 121.3 185 43.2
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 9.7e-26 120.9 215 38.6
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 1.3e-25 120.6 147 47.6
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.3e-25 120.6 162 46.9
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 1.7e-25 120.2 145 46.2
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 2.8e-25 119.4 176 40.9
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 2.8e-25 119.4 153 45.8
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 2.8e-25 119.4 154 48.1
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 3.7e-25 119.0 206 43.2
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 8.2e-25 117.9 155 45.8
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 1.4e-24 117.1 188 43.6
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 1.4e-24 117.1 152 42.8
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 1.8e-24 116.7 151 48.3
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 2.4e-24 116.3 149 38.3
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 2.4e-24 116.3 143 48.3
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 3.1e-24 115.9 152 43.4
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 4.1e-24 115.5 144 45.1
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 7.0e-24 114.8 152 46.7
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 7.0e-24 114.8 147 44.2
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 9.1e-24 114.4 151 43.7
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.2e-23 114.0 145 45.5
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 2.0e-23 113.2 150 47.3
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 4.5e-23 112.1 181 42.0
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 5.9e-23 111.7 143 44.1
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 5.9e-23 111.7 174 38.5
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 1.3e-22 110.5 151 43.0
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 1.7e-22 110.2 171 40.4
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 2.2e-22 109.8 148 43.9
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 2.2e-22 109.8 142 45.1
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 2.9e-22 109.4 149 43.6
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 3.8e-22 109.0 153 41.8
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 3.8e-22 109.0 153 41.8
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 3.8e-22 109.0 144 45.1
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 6.5e-22 108.2 148 45.9
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 8.5e-22 107.8 151 39.7
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 1.1e-21 107.5 144 45.8
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 1.5e-21 107.1 144 46.5
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 1.5e-21 107.1 171 39.8
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 1.9e-21 106.7 148 45.3
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 3.2e-21 105.9 174 39.7
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 5.5e-21 105.1 151 40.4
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 5.5e-21 105.1 145 42.8
SGA_v2.0_scaffold135G34886 Striga asiatica HOM05D005169 ORTHO05D006436 5.5e-21 105.1 152 39.5
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 7.2e-21 104.8 150 40.7
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 7.2e-21 104.8 144 43.8
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 7.2e-21 104.8 159 41.5
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 9.4e-21 104.4 151 40.4
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 1.6e-20 103.6 148 39.2
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 2.1e-20 103.2 175 34.9
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 2.7e-20 102.8 151 41.7
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 4.7e-20 102.1 147 44.2
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 4.7e-20 102.1 144 43.1
SalBow7G2461 Salvia bowleyana HOM05D005169 ORTHO05D006436 1.0e-19 100.9 156 40.4
Migut.K01374 Erythranthe guttata HOM05D005169 ORTHO05D006436 1.4e-19 100.5 144 42.4
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 1.4e-19 100.5 143 42.0
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 1.8e-19 100.1 150 40.7
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 2.3e-19 99.8 163 36.8
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 5.2e-19 98.6 164 37.2
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 1.2e-18 97.4 146 41.8
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 2.6e-18 96.3 148 40.5
Oeu043043.1 Olea europaea HOM05D005169 ORTHO05D006436 7.5e-18 94.7 146 40.4
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 9.8e-18 94.4 155 38.7
SGA_v2.0_scaffold30G12455 Striga asiatica HOM05D005169 ORTHO05D006436 1.7e-17 93.6 150 42.0
BcaC08g44071 Brassica carinata HOM05D005169 ORTHO05D006436 3.7e-17 92.4 58 81.0
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 3.7e-17 92.4 150 40.7
C02p07220 Brassica napus HOM05D005169 ORTHO05D006436 6.3e-17 91.7 108 51.9
BolC2t06654H Brassica oleracea HOM05D005169 ORTHO05D006436 6.3e-17 91.7 108 51.9
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 6.3e-17 91.7 165 37.6
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 8.3e-17 91.3 166 37.3
BcaC04g22405 Brassica carinata HOM05D005169 ORTHO05D006436 1.1e-16 90.9 58 79.3
C09p19720 Brassica napus HOM05D005169 ORTHO05D006436 1.1e-16 90.9 58 79.3
Glyma.19G006800 Glycine max HOM05D005169 ORTHO05D006436 1.4e-16 90.5 151 37.1
Glyma.05G006400 Glycine max HOM05D005169 ORTHO05D006436 1.8e-16 90.1 150 32.7
Cpa.g.sc3104.1 Carica papaya HOM05D005169 ORTHO05D006436 2.4e-16 89.7 139 42.4
Os01g0638800 Oryza sativa ssp. japonica HOM05D005169 ORTHO05D006436 3.1e-16 89.4 154 37.7
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 5.4e-16 88.6 145 37.9
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 7.0e-16 88.2 131 41.2
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 1.6e-15 87.0 151 39.1
Zm00001eb296260 Zea mays HOM05D005169 ORTHO05D006436 7.7e-15 84.7 181 40.3
Duzib147G0144 Durio zibethinus HOM05D005169 ORTHO05D006436 1.7e-14 83.6 131 41.2
Sc16g0007930 Simmondsia chinensis HOM05D005169 ORTHO05D006436 2.2e-14 83.2 144 35.4
Sopen12g026520 Solanum pennellii HOM05D005169 ORTHO05D006436 1.5e-13 80.5 91 48.4
ATR0730G202 Amborella trichopoda HOM05D005169 ORTHO05D006436 3.2e-13 79.3 145 36.6
Ah.03g141220 Amaranthus hybridus HOM05D005169 ORTHO05D006436 1.0e-11 74.3 70 47.1
TPR.G10806 Trifolium pratense HOM05D005169 ORTHO05D006436 1.0e-11 74.3 55 56.4
HPP92_024720 Vanilla planifolia HOM05D005169 ORTHO05D006436 1.8e-11 73.6 146 37.7
Zm00001eb157680 Zea mays HOM05D005169 ORTHO05D006436 5.2e-11 72.0 146 33.6
CDE07G0703 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 8.8e-11 71.2 160 33.1
HPP92_008039 Vanilla planifolia HOM05D005169 ORTHO05D006436 1.2e-10 70.9 151 34.4
unitig_899.g15487 Utricularia gibba HOM05D005169 ORTHO05D006436 1.7e-09 67.0 139 30.2
Zm00001eb158870 Zea mays HOM05D005169 ORTHO05D006436 3.7e-09 65.9 152 32.2
SEGI_21704 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 8.3e-09 64.7 172 30.8
SEGI_19138 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 5.4e-08 62.0 176 28.4
MD09G1031300 Malus domestica HOM05D005169 ORTHO05D006436 4.5e-07 58.9 113 39.8
SEGI_22807 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 2.3e-06 56.6 163 27.0


User provided reference genes

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