Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 2.5e-224 781.9 436 100.0
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 3.4e-165 585.5 443 71.8
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.1e-162 576.2 464 72.2
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 1.7e-156 556.6 442 72.9
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 6.0e-154 548.1 439 71.5
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 6.9e-150 534.6 441 69.4
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 1.2e-149 533.9 440 68.9
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 2.0e-149 533.1 441 69.8
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 2.9e-148 529.3 442 68.6
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 1.6e-146 523.5 440 68.2
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 4.2e-139 498.8 441 65.5
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 2.7e-138 496.1 441 65.1
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 1.6e-135 486.9 437 64.3
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 6.2e-135 485.0 440 64.5
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 3.1e-134 482.6 440 64.1
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 2.9e-132 476.1 441 64.2
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 3.9e-113 412.5 464 56.9
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 2.2e-100 370.2 466 51.9
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 8.0e-98 361.7 457 51.4
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 1.4e-97 360.9 463 50.1
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 4.0e-97 359.4 465 50.1
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 3.1e-94 349.7 445 50.3
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 5.4e-94 349.0 458 48.3
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 4.5e-93 345.9 458 48.9
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.0e-92 344.7 454 48.5
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 5.0e-92 342.4 448 51.1
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 1.9e-91 340.5 465 47.1
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 1.6e-90 337.4 466 46.8
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 2.1e-90 337.0 449 49.7
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 2.1e-90 337.0 452 50.0
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 6.1e-90 335.5 450 50.0
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 1.0e-89 334.7 450 50.2
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 1.8e-89 334.0 468 45.7
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 3.4e-88 329.7 463 47.7
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 2.8e-87 326.6 450 48.0
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 4.9e-87 325.9 468 46.2
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 6.3e-87 325.5 467 47.5
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 8.3e-87 325.1 440 46.8
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 1.1e-86 324.7 440 46.6
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 1.1e-86 324.7 448 46.9
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 1.1e-86 324.7 461 47.3
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 1.1e-86 324.7 476 52.9
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 2.4e-86 323.6 446 46.6
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 2.7e-85 320.1 470 47.4
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 4.5e-85 319.3 455 47.0
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 4.5e-85 319.3 474 46.4
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 5.9e-85 318.9 471 47.1
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 1.0e-84 318.2 482 47.3
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 1.7e-84 317.4 468 44.9
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 1.9e-83 313.9 367 50.7
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 4.7e-82 309.3 465 45.6
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 6.1e-82 308.9 453 46.6
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 8.0e-82 308.5 344 51.7
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 1.8e-81 307.4 441 45.8
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 2.3e-81 307.0 461 45.3
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 1.2e-80 304.7 351 49.3
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 1.5e-80 304.3 361 49.6
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 9.8e-80 301.6 472 45.6
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 1.7e-79 300.8 459 46.0
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 6.3e-79 298.9 462 43.5
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 3.2e-78 296.6 464 44.2
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 7.0e-78 295.4 463 42.8
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 7.0e-78 295.4 375 48.5
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 2.7e-77 293.5 538 41.3
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 4.6e-77 292.7 488 42.0
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 7.8e-77 292.0 304 53.9
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 2.9e-76 290.0 448 43.3
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 2.9e-76 290.0 448 43.3
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 2.9e-76 290.0 333 52.3
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 2.9e-76 290.0 340 50.9
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 6.6e-76 288.9 446 46.0
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 1.2e-74 284.6 465 44.5
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 2.3e-73 280.4 459 42.9
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 5.2e-73 279.3 511 41.9
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 1.7e-71 274.2 351 48.7
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 3.7e-71 273.1 353 47.3
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 4.9e-71 272.7 342 46.5
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 4.9e-71 272.7 345 48.1
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 1.4e-70 271.2 364 47.8
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 1.4e-70 271.2 451 42.1
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 1.9e-70 270.8 345 47.8
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 7.0e-70 268.9 397 45.1
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 7.0e-70 268.9 348 46.0
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 9.2e-70 268.5 463 39.7
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 1.2e-69 268.1 629 36.4
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 2.0e-69 267.3 358 47.8
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 2.7e-69 266.9 448 45.1
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 3.5e-69 266.5 351 47.0
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 4.6e-69 266.2 318 49.7
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 2.3e-68 263.8 493 40.4
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 8.6e-68 261.9 418 41.4
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 1.5e-67 261.2 347 47.0
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 4.3e-67 259.6 339 46.9
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 7.3e-67 258.8 459 44.2
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.1e-66 257.3 460 44.3
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 3.6e-66 256.5 439 43.7
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 4.7e-66 256.1 353 46.2
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.1e-65 255.0 462 44.6
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 2.3e-65 253.8 369 43.6
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 4.0e-65 253.1 460 44.1
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 8.9e-65 251.9 350 46.3
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 5.8e-64 249.2 333 48.0
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 1.3e-63 248.1 448 41.1
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 2.9e-63 246.9 465 37.2
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 8.3e-63 245.4 448 46.7
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 3.2e-62 243.4 242 55.8
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 5.4e-62 242.7 351 47.6
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 9.2e-62 241.9 370 42.2
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 1.2e-61 241.5 408 42.9
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 2.7e-61 240.4 469 38.6
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 2.7e-61 240.4 383 41.0
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 1.0e-60 238.4 362 42.3
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 3.9e-60 236.5 443 43.8
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 3.9e-60 236.5 412 40.0
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 5.6e-59 232.6 341 44.0
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 4.7e-58 229.6 136 82.4
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 2.3e-57 227.3 349 41.3
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 3.1e-57 226.9 115 99.1
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 4.0e-57 226.5 317 44.8
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 4.0e-57 226.5 415 38.1
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 4.0e-57 226.5 415 38.1
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 1.5e-56 224.6 342 43.3
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 5.8e-56 222.6 465 36.8
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 3.2e-54 216.9 385 40.0
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 2.1e-53 214.2 312 44.9
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 1.7e-52 211.1 237 54.0
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 1.1e-49 201.8 204 55.9
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 2.4e-49 200.7 474 36.9
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 2.9e-47 193.7 267 47.2
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 1.9e-46 191.0 117 80.3
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 1.9e-46 191.0 117 80.3
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 2.7e-45 187.2 277 43.0
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 1.0e-44 185.3 101 89.1
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 3.6e-42 176.8 415 35.7
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 3.4e-40 170.2 116 77.6
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 2.1e-37 161.0 97 80.4
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 3.6e-34 150.2 152 49.3
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 2.6e-32 144.1 76 92.1
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 9.9e-32 142.1 159 47.8
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 1.9e-30 137.9 291 36.8
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 2.3e-28 131.0 66 97.0
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 6.9e-25 119.4 254 36.2
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 9.3e-22 109.0 278 31.7
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 7.9e-21 105.9 66 78.8
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 1.1e-19 102.1 330 34.2
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 2.8e-18 97.4 88 56.8
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 8.2e-18 95.9 106 49.1
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 6.9e-17 92.8 105 45.7
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.5e-16 91.7 63 69.8
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 3.4e-16 90.5 55 83.6
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 2.7e-13 80.9 92 50.0
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 3.5e-13 80.5 346 32.4
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 5.1e-12 76.6 197 32.0
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 3.3e-11 73.9 37 86.5
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 9.7e-11 72.4 300 30.0
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 5.3e-09 66.6 52 57.7
AL1040U10020 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.6e-08 64.3 38 92.1
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 1.0e-07 62.4 96 38.5
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 1.3e-07 62.0 37 67.6
Ca_29111_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 8.5e-07 59.3 77 42.9
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 1.1e-06 58.9 67 49.3
Cre06.g264300 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 4.2e-06 57.0 83 43.4
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 5.5e-06 56.6 105 31.4
Ca_31319_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 9.4e-06 55.8 77 42.9


User provided reference genes

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