Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 4.1e-223 777.7 385 100.0
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 4.7e-203 711.1 385 92.2
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 4.7e-203 711.1 385 91.4
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 2.2e-200 702.2 385 89.4
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.6e-198 696.0 385 89.1
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 1.3e-189 666.4 385 85.5
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 2.3e-189 665.6 386 84.7
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 3.3e-188 661.8 387 84.8
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 3.3e-188 661.8 387 84.8
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 5.6e-188 661.0 387 84.5
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 5.6e-188 661.0 387 84.5
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 1.6e-187 659.4 387 84.5
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 3.6e-187 658.3 385 84.7
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 4.5e-185 651.4 370 86.2
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 6.2e-179 630.9 383 80.9
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 9.0e-178 627.1 378 80.7
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 1.2e-177 626.7 323 93.2
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 2.7e-174 615.5 382 78.5
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 2.4e-170 602.4 382 76.2
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 5.3e-170 601.3 382 76.4
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 2.0e-169 599.4 382 75.9
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 8.4e-168 594.0 320 90.0
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 2.5e-167 592.4 383 75.7
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 3.5e-166 588.6 383 74.7
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 1.3e-165 586.6 386 76.2
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 9.6e-164 580.5 320 85.9
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 1.8e-162 576.2 381 73.5
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 3.8e-160 568.5 378 72.5
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 6.5e-160 567.8 378 72.5
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 1.1e-159 567.0 377 72.4
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.5e-159 565.8 381 71.7
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 5.5e-159 564.7 382 71.7
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 2.1e-158 562.8 380 71.6
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 2.7e-158 562.4 380 72.6
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 3.6e-158 562.0 379 72.0
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 1.0e-157 560.5 388 75.5
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.8e-157 559.7 382 71.5
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 2.3e-157 559.3 374 73.3
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 2.3e-157 559.3 403 68.5
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 3.9e-157 558.5 385 70.1
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 5.1e-157 558.1 322 82.0
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 5.1e-157 558.1 377 71.9
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 1.1e-156 557.0 383 71.8
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 1.1e-156 557.0 377 71.9
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 1.1e-156 557.0 385 70.9
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 1.5e-156 556.6 383 71.0
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 1.9e-156 556.2 378 71.7
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 2.2e-155 552.7 379 71.5
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 2.8e-155 552.4 377 71.4
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 4.8e-155 551.6 377 71.1
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 6.3e-155 551.2 378 70.9
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 8.2e-155 550.8 386 70.5
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.4e-154 550.1 386 70.5
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 3.1e-154 548.9 382 71.2
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 6.9e-154 547.7 344 74.7
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 9.1e-154 547.4 381 70.9
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 9.1e-154 547.4 382 71.7
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 1.2e-153 547.0 345 74.8
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 1.5e-153 546.6 388 71.1
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 2.0e-153 546.2 377 71.1
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.6e-153 545.8 386 69.9
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 2.6e-153 545.8 383 70.2
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 3.4e-153 545.4 320 81.6
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 3.4e-153 545.4 386 70.7
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 5.9e-153 544.7 382 69.9
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 7.7e-153 544.3 392 68.9
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 1.3e-152 543.5 323 78.6
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.7e-152 543.1 322 79.8
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.2e-152 542.7 396 68.2
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 2.9e-152 542.3 319 80.6
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 2.9e-152 542.3 378 70.1
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 3.8e-152 542.0 383 71.3
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 3.8e-152 542.0 380 71.1
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 6.5e-152 541.2 383 70.5
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 8.5e-152 540.8 383 70.8
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 8.5e-152 540.8 382 70.2
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 1.4e-151 540.0 316 77.8
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 2.5e-151 539.3 386 68.9
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 3.2e-151 538.9 386 69.4
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 3.2e-151 538.9 325 77.8
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 4.2e-151 538.5 398 67.8
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 7.2e-151 537.7 384 70.6
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 9.4e-151 537.3 379 69.4
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 2.1e-150 536.2 351 73.2
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 4.6e-150 535.0 380 69.5
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 6.1e-150 534.6 338 73.1
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 6.1e-150 534.6 371 70.9
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 1.0e-149 533.9 382 69.4
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 1.0e-149 533.9 378 69.3
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 1.0e-149 533.9 315 79.7
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 1.4e-149 533.5 308 80.8
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 3.0e-149 532.3 320 80.0
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 3.9e-149 531.9 391 66.5
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 3.9e-149 531.9 377 69.8
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 5.1e-149 531.6 391 67.8
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 6.7e-149 531.2 397 67.5
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 1.1e-148 530.4 378 68.3
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 2.0e-148 529.6 381 69.8
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 3.3e-148 528.9 336 72.6
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 4.4e-148 528.5 380 68.7
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 1.7e-147 526.6 382 70.2
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 1.4e-146 523.5 378 68.5
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 1.4e-146 523.5 339 72.9
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 5.3e-146 521.5 339 78.5
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 5.9e-145 518.1 378 68.0
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.1e-143 513.8 378 66.7
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 1.1e-143 513.8 410 64.4
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 4.7e-142 508.4 339 77.6
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 3.0e-141 505.8 303 75.9
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 5.7e-140 501.5 300 75.7
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 2.2e-139 499.6 323 72.8
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 2.4e-138 496.1 353 70.8
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 4.1e-138 495.4 361 66.5
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 3.5e-137 492.3 344 68.0
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 3.5e-137 492.3 378 66.7
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 1.0e-136 490.7 300 73.3
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 8.5e-136 487.6 353 70.8
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 1.1e-135 487.3 384 65.4
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 5.5e-135 485.0 355 68.7
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 1.2e-134 483.8 342 66.4
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 3.6e-134 482.3 378 65.6
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 7.5e-132 474.6 377 64.2
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 2.2e-131 473.0 378 63.0
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 4.8e-131 471.9 353 69.7
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.2e-126 457.2 327 71.6
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 2.1e-126 456.4 311 67.2
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 5.2e-125 451.8 298 70.5
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 2.0e-124 449.9 327 68.8
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 1.8e-122 443.4 296 66.9
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 4.1e-122 442.2 349 65.0
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 2.8e-118 429.5 381 55.4
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 4.7e-118 428.7 241 82.6
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 1.1e-114 417.5 302 62.9
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 2.0e-113 413.3 328 59.8
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 3.5e-113 412.5 288 70.1
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 3.5e-105 386.0 301 59.5
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 1.0e-104 384.4 274 70.1
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 1.1e-103 380.9 326 62.6
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 3.1e-101 372.9 309 61.5
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 1.2e-100 370.9 301 57.5
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 5.4e-98 362.1 256 69.5
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 2.3e-96 356.7 361 52.6
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 2.4e-90 336.7 404 52.2
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.2e-89 334.3 233 67.8
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 2.1e-89 333.6 216 76.4
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 2.7e-89 333.2 201 75.6
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 3.5e-89 332.8 199 75.4
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 2.5e-87 326.6 237 70.9
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 3.4e-76 289.7 219 69.9
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 2.1e-73 280.4 222 66.2
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 3.0e-72 276.6 356 44.7
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 1.9e-66 257.3 297 46.1
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 2.5e-63 246.9 299 42.5
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 2.4e-61 240.4 304 42.4
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 7.1e-50 202.2 153 66.7
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 4.3e-47 193.0 114 76.3
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 5.9e-44 182.6 184 54.9
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 6.5e-43 179.1 318 36.8
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 1.9e-39 167.5 132 68.2
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 1.3e-38 164.9 95 84.2
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 8.2e-38 162.2 92 84.8
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 1.1e-37 161.8 132 65.2
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 9.1e-37 158.7 92 82.6
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 9.1e-37 158.7 132 63.6
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 5.0e-35 152.9 94 79.8
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 6.3e-30 136.0 102 68.6
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 1.4e-24 118.2 134 54.5
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 2.3e-24 117.5 92 67.4
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 6.7e-24 115.9 66 80.3
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 8.8e-24 115.5 73 68.5
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 1.5e-23 114.8 71 71.8
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 1.8e-21 107.8 403 24.8
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 1.8e-21 107.8 120 51.7
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 1.2e-20 105.1 62 80.6
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 5.0e-19 99.8 60 71.7
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 1.6e-17 94.7 51 88.2
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 1.6e-12 78.2 277 26.7
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 1.6e-12 78.2 41 87.8
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 4.5e-12 76.6 44 79.5
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 4.5e-12 76.6 44 79.5
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 1.7e-11 74.7 102 46.1
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 2.9e-11 73.9 74 52.7
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 5.5e-10 69.7 47 70.2
Hma1.2p1_1039F.1_g250810 Hydrangea macrophylla HOM05D001854 ORTHO05D001800 3.7e-06 57.0 39 66.7
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 4.8e-06 56.6 33 81.8


User provided reference genes

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