Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 1.5e-303 1045.4 540 100.0
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 3.0e-264 914.8 538 88.3
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 3.1e-261 904.8 543 86.4
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 2.9e-259 898.3 538 87.0
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 6.1e-241 837.4 540 80.9
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 1.6e-228 796.2 540 78.5
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 3.3e-226 788.5 524 78.6
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 2.1e-217 759.2 537 76.4
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 8.9e-216 753.8 538 76.4
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 8.9e-216 753.8 538 76.4
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 9.9e-215 750.4 539 75.5
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 3.8e-214 748.4 538 75.8
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 9.0e-200 700.7 529 71.1
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 9.4e-165 584.3 539 58.1
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 3.0e-163 579.3 527 57.9
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 3.7e-161 572.4 538 56.5
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 4.7e-156 555.4 564 54.6
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.4e-155 553.9 538 55.8
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 1.8e-155 553.5 526 56.5
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 3.9e-155 552.4 539 55.7
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 2.6e-154 549.7 544 55.3
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 2.6e-154 549.7 538 55.8
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 4.4e-154 548.9 538 55.6
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 5.7e-154 548.5 531 55.7
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 7.4e-154 548.1 538 55.6
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 1.7e-153 547.0 540 55.9
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 1.0e-150 537.7 552 54.5
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 2.2e-150 536.6 546 56.0
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 5.0e-150 535.4 548 53.1
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 5.0e-150 535.4 532 54.7
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 6.1e-148 528.5 542 53.7
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 1.4e-147 527.3 532 55.6
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 9.7e-146 521.2 526 53.0
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.3e-145 520.8 534 53.2
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 2.8e-145 519.6 542 53.0
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 2.4e-144 516.5 526 53.6
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 2.7e-143 513.1 529 54.1
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 5.9e-143 511.9 526 52.3
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 7.7e-143 511.5 480 59.2
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 2.2e-142 510.0 479 57.4
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 1.5e-141 507.3 534 52.1
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 7.2e-141 505.0 529 52.6
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 4.7e-140 502.3 542 52.6
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 6.1e-140 501.9 542 53.1
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 2.3e-139 500.0 528 53.0
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 3.0e-139 499.6 536 51.9
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 8.8e-139 498.0 551 51.7
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 1.5e-138 497.3 537 51.8
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 5.7e-138 495.4 536 51.3
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 1.7e-137 493.8 545 51.6
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 2.2e-137 493.4 533 51.8
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 6.3e-137 491.9 535 51.6
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 8.3e-137 491.5 533 51.0
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 1.4e-136 490.7 517 53.2
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 9.1e-136 488.0 526 53.2
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 1.7e-134 483.8 532 51.5
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 1.7e-134 483.8 555 49.9
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 8.6e-134 481.5 533 51.6
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 1.5e-133 480.7 527 51.2
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 2.5e-133 479.9 530 50.6
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 2.5e-133 479.9 532 51.1
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 6.1e-132 475.3 536 51.9
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 8.0e-132 474.9 554 50.0
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 1.0e-131 474.6 536 48.5
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 1.4e-131 474.2 539 50.6
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 4.0e-131 472.6 537 49.5
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 9.8e-130 468.0 558 48.4
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 9.8e-130 468.0 558 48.6
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 2.8e-129 466.5 496 52.0
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 4.9e-129 465.7 435 57.0
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 4.9e-129 465.7 505 51.7
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 9.2e-128 461.5 537 48.4
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 2.0e-127 460.3 565 46.7
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 2.3e-126 456.8 562 47.3
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 1.5e-125 454.1 533 47.8
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 8.0e-124 448.4 532 48.5
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 1.5e-122 444.1 519 47.2
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 5.8e-122 442.2 472 52.3
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 2.9e-121 439.9 518 48.5
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 3.5e-119 433.0 562 46.6
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 6.6e-118 428.7 536 46.5
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 1.8e-115 420.6 535 44.9
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 4.4e-114 416.0 499 46.3
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 3.3e-109 399.8 486 49.8
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 1.0e-102 378.3 381 54.1
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 5.4e-96 355.9 533 43.3
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 1.0e-86 325.1 206 80.1
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 5.3e-83 312.8 534 39.7
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.6e-79 301.2 469 40.1
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 1.7e-73 281.2 563 34.8
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 2.1e-71 274.2 295 54.6
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 1.1e-67 261.9 570 33.0
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 1.3e-65 255.0 587 32.5
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.5e-61 241.5 279 48.7
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 8.2e-60 235.7 517 33.7
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.5e-56 224.2 356 40.2
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 1.0e-54 218.8 312 42.3
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 2.0e-53 214.5 229 52.8
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 4.8e-52 209.9 421 35.6
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 5.3e-51 206.5 396 37.4
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.7e-49 201.4 334 38.3
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 1.8e-46 191.4 235 46.4
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 2.2e-44 184.5 214 49.5
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 2.5e-32 144.4 136 50.7
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 1.4e-27 128.6 207 42.5
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 1.5e-24 118.6 422 27.0
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 7.2e-24 116.3 127 49.6
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 1.2e-23 115.5 93 60.2
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 3.0e-22 110.9 97 52.6
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 2.8e-20 104.4 91 59.3
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 8.3e-20 102.8 121 48.8
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 7.0e-19 99.8 105 47.6
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 2.0e-18 98.2 179 37.4
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 2.7e-18 97.8 99 49.5
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 4.5e-18 97.1 95 53.7
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 3.8e-17 94.0 141 41.8
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 6.6e-17 93.2 92 55.4
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 1.9e-16 91.7 103 47.6
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 2.5e-16 91.3 519 24.9
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 1.4e-14 85.5 75 58.7
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 8.3e-12 76.3 133 36.1
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 7.8e-10 69.7 143 37.8
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.7e-09 68.6 143 37.8
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 2.3e-09 68.2 291 26.1
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 5.0e-09 67.0 63 52.4
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 6.6e-09 66.6 263 27.0
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 1.5e-08 65.5 92 42.4
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.3e-08 64.3 137 35.0
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 4.3e-08 63.9 64 51.6
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 5.6e-08 63.5 139 30.9
QL12p004446 Quercus lobata HOM05D004277 ORTHO05D050645 2.8e-07 61.2 57 54.4
Actinidia07381 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.6e-07 60.8 135 34.8
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 3.6e-07 60.8 110 40.0
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 8.0e-07 59.7 110 39.1


User provided reference genes

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