Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s2575 Capsella rubella HOM05D007236 ORTHO05D009150 1.5e-212 742.7 389 100.0
AL2G39340 Arabidopsis lyrata HOM05D007236 ORTHO05D009150 3.1e-194 681.8 387 92.5
AT1G78915 Arabidopsis thaliana HOM05D007236 ORTHO05D009150 1.9e-191 672.5 409 88.3
CARHR072510 Cardamine hirsuta HOM05D007236 ORTHO05D009150 1.7e-187 659.4 391 88.2
Sp5g33940 Schrenkiella parvula HOM05D007236 ORTHO05D009150 8.2e-187 657.1 391 89.3
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 7.9e-182 640.6 391 86.2
A07p27420 Brassica napus HOM05D007236 ORTHO05D009150 1.3e-179 633.3 419 81.4
BolC6t38197H Brassica oleracea HOM05D007236 ORTHO05D009150 2.8e-179 632.1 402 83.8
BcaB02g07186 Brassica carinata HOM05D007236 ORTHO05D009150 5.3e-178 627.9 392 85.5
C06p30340 Brassica napus HOM05D007236 ORTHO05D009150 1.9e-175 619.4 424 79.5
BraA07t30383Z Brassica rapa HOM05D007236 ORTHO05D009150 2.0e-172 609.4 412 80.6
Aa31LG4G2080 Aethionema arabicum HOM05D007236 ORTHO05D009150 1.5e-164 583.2 388 78.6
Thhalv10018805m.g Eutrema salsugineum HOM05D007236 ORTHO05D009150 1.0e-152 543.9 391 78.5
THA.LOC104812331 Tarenaya hassleriana HOM05D007236 ORTHO05D009150 6.6e-152 541.2 397 71.3
Thecc.06G055000 Theobroma cacao HOM05D007236 ORTHO05D009150 1.4e-138 496.9 407 66.3
Manes.06G179100 Manihot esculenta HOM05D007236 ORTHO05D009150 1.9e-135 486.5 387 65.4
Duzib160G0063 Durio zibethinus HOM05D007236 ORTHO05D009150 4.3e-135 485.3 397 66.0
Potri.008G003800 Populus trichocarpa HOM05D007236 ORTHO05D009150 1.8e-133 479.9 396 64.4
Sabra08G0001500 Salix brachista HOM05D007236 ORTHO05D009150 2.6e-132 476.1 410 63.4
GSVIVG01029561001 Vitis vinifera HOM05D007236 ORTHO05D009150 2.6e-132 476.1 392 65.6
QL05p088536 Quercus lobata HOM05D007236 ORTHO05D009150 2.4e-130 469.5 383 64.8
Prupe.3G024200 Prunus persica HOM05D007236 ORTHO05D009150 2.3e-128 463.0 394 62.7
Dinv20327 Davidia involucrata HOM05D007236 ORTHO05D009150 3.9e-128 462.2 394 62.7
MD09G1166500 Malus domestica HOM05D007236 ORTHO05D009150 1.1e-127 460.7 396 62.4
FvH4_6g36830 Fragaria vesca HOM05D007236 ORTHO05D009150 1.2e-126 457.2 409 60.6
Gohir.A06G116300 Gossypium hirsutum HOM05D007236 ORTHO05D009150 1.2e-126 457.2 397 63.7
Lj3g0020822 Lotus japonicus HOM05D007236 ORTHO05D009150 1.2e-126 457.2 387 63.8
Gorai.010G141500 Gossypium raimondii HOM05D007236 ORTHO05D009150 1.6e-126 456.8 408 62.7
RcHm_v2.0_Chr2g0149221 Rosa chinensis HOM05D007236 ORTHO05D009150 2.1e-126 456.4 408 61.3
FAN14G0281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 2.8e-126 456.1 409 60.6
Eucgr.J03184 Eucalyptus grandis HOM05D007236 ORTHO05D009150 4.7e-126 455.3 393 62.1
FAN09G1281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 6.2e-126 454.9 409 60.4
AUR62025709 Chenopodium quinoa HOM05D007236 ORTHO05D009150 1.3e-123 447.2 407 60.0
TWI18G0405 Tripterygium wilfordii HOM05D007236 ORTHO05D009150 2.9e-123 446.0 406 61.3
VMungo0331G1697 Vigna mungo HOM05D007236 ORTHO05D009150 1.1e-122 444.1 387 64.1
TAR636G0504 Trochodendron aralioides HOM05D007236 ORTHO05D009150 1.4e-122 443.7 388 61.9
Glyma.08G225400 Glycine max HOM05D007236 ORTHO05D009150 3.2e-122 442.6 395 61.5
FAN05G3464 Fragaria x ananassa HOM05D007236 ORTHO05D009150 2.7e-121 439.5 435 57.7
Psat7g265040 Pisum sativum HOM05D007236 ORTHO05D009150 2.7e-121 439.5 383 62.9
arahy.Tifrunner.gnm1.ann1.I3AU87 Arachis hypogaea HOM05D007236 ORTHO05D009150 4.6e-121 438.7 380 62.9
CsaV3_3G030460 Cucumis sativus L. HOM05D007236 ORTHO05D009150 9.6e-119 431.0 381 59.1
Actinidia31123 Actinidia chinensis HOM05D007236 ORTHO05D009150 1.6e-118 430.3 409 59.2
MELO3C026715.2 Cucumis melo HOM05D007236 ORTHO05D009150 2.8e-118 429.5 381 58.3
Glyma.07G001600 Glycine max HOM05D007236 ORTHO05D009150 4.7e-118 428.7 384 61.2
Hund05669 Selenicereus undatus HOM05D007236 ORTHO05D009150 8.1e-118 427.9 381 60.6
arahy.Tifrunner.gnm1.ann1.QM8PPU Arachis hypogaea HOM05D007236 ORTHO05D009150 3.4e-116 422.5 408 59.1
PGR031G2337 Punica granatum HOM05D007236 ORTHO05D009150 4.4e-116 422.2 388 57.2
Ca_20979_v3 Cicer arietinum L. HOM05D007236 ORTHO05D009150 3.8e-115 419.1 321 67.3
Nn5g27081 Nelumbo nucifera HOM05D007236 ORTHO05D009150 6.4e-115 418.3 385 59.5
ClCG07G014680 Citrullus lanatus HOM05D007236 ORTHO05D009150 7.1e-114 414.8 351 62.4
COL.COLO4_31136 Corchorus olitorius HOM05D007236 ORTHO05D009150 9.3e-114 414.5 359 63.0
SGA_v2.0_scaffold71G23973 Striga asiatica HOM05D007236 ORTHO05D009150 1.6e-113 413.7 369 60.2
Aqoxy5G00022 Aquilegia oxysepala HOM05D007236 ORTHO05D009150 6.0e-113 411.8 396 58.1
HanXRQChr10g0311241 Helianthus annuus HOM05D007236 ORTHO05D009150 2.5e-111 406.4 378 58.7
Sed0012172 Sechium edule HOM05D007236 ORTHO05D009150 1.3e-110 404.1 389 55.8
ECA234G1409 Erigeron canadensis HOM05D007236 ORTHO05D009150 2.1e-110 403.3 349 61.0
Medtr4g005300 Medicago truncatula HOM05D007236 ORTHO05D009150 2.1e-110 403.3 335 64.5
Lsat_1_v5_gn_5_137160 Lactuca sativa HOM05D007236 ORTHO05D009150 2.8e-110 402.9 353 59.5
Sopen03g041760 Solanum pennellii HOM05D007236 ORTHO05D009150 1.8e-109 400.2 392 55.6
Solyc03g124030.4 Solanum lycopersicum HOM05D007236 ORTHO05D009150 4.0e-109 399.1 392 55.4
Cc04_g00020 Coffea canephora HOM05D007236 ORTHO05D009150 2.4e-106 389.8 356 57.3
TPR.G38815 Trifolium pratense HOM05D007236 ORTHO05D009150 6.0e-105 385.2 332 62.0
AUR62001326 Chenopodium quinoa HOM05D007236 ORTHO05D009150 7.3e-103 378.3 356 58.1
CDE05G3570 Ceratophyllum demersum HOM05D007236 ORTHO05D008204 2.1e-102 376.7 386 54.4
Zm00001eb305180 Zea mays HOM05D007236 ORTHO05D009150 1.1e-101 374.4 371 55.3
Oeu039939.2 Olea europaea HOM05D007236 ORTHO05D009150 1.4e-101 374.0 334 59.6
unitig_32.g11550 Utricularia gibba HOM05D007236 ORTHO05D009150 2.6e-100 369.8 380 51.1
DCAR_016079 Daucus carota HOM05D007236 ORTHO05D009150 5.8e-100 368.6 403 52.4
Gohir.D06G121200 Gossypium hirsutum HOM05D007236 ORTHO05D009150 7.4e-95 351.7 397 53.1
Sc12g0011240 Simmondsia chinensis HOM05D000518 ORTHO05D000737 2.1e-94 350.1 273 64.5
ATR0215G005 Amborella trichopoda HOM05D007236 ORTHO05D009150 1.8e-93 347.1 367 55.6
Migut.I01208 Erythranthe guttata HOM05D007236 ORTHO05D009150 1.8e-93 347.1 307 59.6
vmacro12583 Vaccinium macrocarpon HOM05D007236 ORTHO05D009150 5.5e-90 335.5 353 53.8
SEGI_39602 Sequoiadendron giganteum HOM05D007236 ORTHO05D009150 4.3e-87 325.9 367 48.8
CiPaw.01G207800 Carya illinoinensis HOM05D007236 ORTHO05D009150 1.6e-86 323.9 313 59.1
MSTRG.22498 Avicennia marina HOM05D007236 ORTHO05D009150 1.2e-81 307.8 375 48.0
Sc12g0011350 Simmondsia chinensis HOM05D007236 ORTHO05D009150 1.6e-81 307.4 244 63.5
Rhsim02G0000100 Rhododendron simsii HOM05D007236 ORTHO05D009150 2.2e-78 297.0 460 41.5
Lalb_Chr01g0011631 Lupinus albus HOM05D007236 ORTHO05D009150 1.4e-77 294.3 214 69.2
Peaxi162Scf00038g02668 Petunia axillaris HOM05D007236 ORTHO05D009150 5.9e-76 288.9 316 48.7
PSO170G4015 Papaver somniferum HOM05D007236 ORTHO05D009150 2.9e-75 286.6 396 45.7
PSO357G0009 Papaver somniferum HOM05D007236 ORTHO05D009150 5.5e-74 282.3 390 45.1
Haze_16198 Corylus avellana HOM05D007236 ORTHO05D009150 5.3e-69 265.8 269 53.5
Pp3c5_19050 Physcomitrium patens HOM05D007236 ORTHO05D009150 2.2e-67 260.4 367 43.6
CAN.G790.6 Capsicum annuum HOM05D007236 ORTHO05D009150 6.5e-67 258.8 200 63.5
SMO117G0135 Selaginella moellendorffii HOM05D007236 ORTHO05D009150 3.6e-65 253.1 332 43.1
FAN02G2413 Fragaria x ananassa HOM05D007236 ORTHO05D009150 4.7e-65 252.7 299 49.5
Ciclev10013942m.g Citrus clementina HOM05D007236 ORTHO05D009150 2.3e-64 250.4 188 68.1
Lj9A543T71 Lonicera japonica HOM05D007236 ORTHO05D009150 1.2e-60 238.0 188 68.1
Mapoly0075s0045 Marchantia polymorpha HOM05D007236 ORTHO05D009150 2.0e-60 237.3 370 38.6
AagrBONN_evm.TU.Sc2ySwM_117.3884 Anthoceros agrestis HOM05D007236 ORTHO05D009150 1.3e-59 234.6 339 39.2
EL10Ac7g18131 Beta vulgaris HOM05D007236 ORTHO05D009150 9.7e-55 218.4 267 50.2
Atru.chr1.2627 Acer truncatum HOM05D007236 ORTHO05D009150 5.7e-47 192.6 140 71.4
Cpa.g.sc176.15 Carica papaya HOM05D007236 ORTHO05D009150 3.7e-46 189.9 216 50.9
Ciclev10013945m.g Citrus clementina HOM05D007236 ORTHO05D009150 2.9e-35 153.7 118 67.8
Atru.chr1.2630 Acer truncatum HOM05D007236 ORTHO05D009150 8.6e-35 152.1 124 64.5
Nitab4.5_0000499g0120 Nicotiana tabacum HOM05D007236 ORTHO05D009150 2.8e-33 147.1 111 62.2
PRCOL_00005889 Prasinoderma coloniale HOM05D007236 ORTHO05D009150 9.8e-31 138.7 336 31.0
Lj9A543T70 Lonicera japonica HOM05D007236 ORTHO05D009150 2.9e-30 137.1 99 65.7
CANSAT01G0299 Cannabis sativa HOM05D007236 ORTHO05D009150 7.0e-29 132.5 110 61.8
Cre12.g554103 Chlamydomonas reinhardtii HOM05D007236 ORTHO05D009150 5.0e-27 126.3 346 28.3
Os07g0287100 Oryza sativa ssp. japonica HOM05D007236 ORTHO05D009150 8.9e-24 115.5 143 49.7
CSS0013667 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 1.7e-22 111.3 81 67.9
CSS0007704 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 1.5e-18 98.2 101 56.4
MCO09G516 Micromonas commoda HOM05D007236 ORTHO05D009150 4.7e-17 93.2 278 27.3
Haze_16199 Corylus avellana HOM05D007236 ORTHO05D009150 6.2e-17 92.8 122 47.5
Aa31sc24G50 Aethionema arabicum HOM05D002308 ORTHO05D002535 7.1e-13 79.3 227 30.4
THA.LOC104823250 Tarenaya hassleriana HOM05D001509 ORTHO05D001361 2.9e-06 57.4 227 23.3
arahy.Tifrunner.gnm1.ann1.AM6VYI Arachis hypogaea HOM05D001509 ORTHO05D001361 6.4e-06 56.2 180 27.2
SEGI_17616 Sequoiadendron giganteum HOM05D001509 ORTHO05D001361 6.4e-06 56.2 209 23.9


User provided reference genes

Program Settings