Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 3.3e-273 944.5 507 100.0
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 6.7e-205 717.6 512 77.5
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 8.5e-184 647.5 522 70.3
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 1.1e-183 647.1 449 78.4
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 1.8e-181 639.8 521 70.1
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 2.2e-179 632.9 512 70.5
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 1.6e-161 573.5 569 61.0
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 3.2e-159 565.8 513 65.3
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 5.7e-156 555.1 508 64.2
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 7.5e-156 554.7 508 64.2
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 2.9e-152 542.7 516 63.2
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 9.8e-132 474.6 476 60.9
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 9.8e-132 474.6 476 60.9
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 1.7e-123 447.2 526 52.9
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 9.9e-108 394.8 547 46.4
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 1.8e-101 374.0 537 45.4
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 2.4e-101 373.6 540 45.0
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 6.4e-99 365.5 547 43.7
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 7.1e-98 362.1 524 45.4
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 1.6e-97 360.9 536 46.1
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 2.3e-96 357.1 538 43.7
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 5.1e-96 355.9 540 42.6
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 8.7e-96 355.1 536 43.7
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 5.6e-95 352.4 540 43.1
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 1.3e-94 351.3 545 44.6
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 3.6e-94 349.7 533 43.3
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 1.4e-93 347.8 534 45.1
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 1.4e-93 347.8 589 41.4
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 2.4e-93 347.1 557 41.8
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.2e-92 344.7 533 42.8
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 2.6e-92 343.6 520 45.8
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 1.4e-90 337.8 526 42.2
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.4e-90 337.0 528 43.2
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 3.2e-90 336.7 530 44.0
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.2e-90 336.7 540 41.9
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 4.2e-90 336.3 530 43.6
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 3.5e-89 333.2 525 43.0
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 1.0e-88 331.6 531 44.6
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 2.3e-88 330.5 556 42.1
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 3.0e-88 330.1 536 42.7
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 3.0e-88 330.1 519 42.4
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 3.3e-87 326.6 520 42.5
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 9.6e-87 325.1 531 40.5
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 1.3e-86 324.7 543 41.6
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 2.1e-86 323.9 544 41.0
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 8.1e-86 322.0 546 41.4
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 8.1e-86 322.0 551 42.1
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 1.1e-85 321.6 543 41.3
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 9.0e-85 318.5 572 40.6
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 9.0e-85 318.5 530 41.1
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 1.2e-84 318.2 511 42.9
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 1.2e-84 318.2 541 42.0
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 3.4e-84 316.6 563 40.1
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 4.5e-84 316.2 555 39.8
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 3.8e-83 313.2 517 42.2
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 4.9e-83 312.8 552 40.6
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 1.1e-82 311.6 550 39.1
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 1.4e-82 311.2 536 40.9
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 4.2e-82 309.7 537 41.2
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 2.1e-81 307.4 582 39.7
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 2.7e-81 307.0 538 40.3
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 3.5e-81 306.6 496 44.2
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 3.5e-81 306.6 538 40.3
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 6.0e-81 305.8 539 41.6
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 7.9e-81 305.4 542 39.9
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 1.3e-80 304.7 520 41.5
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 3.0e-80 303.5 596 37.9
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 5.1e-80 302.8 539 41.9
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 5.1e-80 302.8 514 40.9
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 6.7e-80 302.4 516 41.3
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 1.9e-79 300.8 546 39.2
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 4.3e-79 299.7 555 39.6
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 5.7e-79 299.3 555 40.4
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 7.4e-79 298.9 529 40.1
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 9.6e-79 298.5 573 38.2
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 1.6e-78 297.7 529 39.7
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 2.1e-78 297.4 544 39.5
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 2.8e-78 297.0 537 39.9
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 6.3e-78 295.8 248 69.0
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 1.1e-77 295.0 540 38.7
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 2.4e-77 293.9 476 42.9
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 2.4e-77 293.9 570 38.1
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 6.9e-77 292.4 538 39.6
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 1.5e-76 291.2 537 38.2
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 1.9e-74 284.3 536 39.0
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 4.2e-74 283.1 544 37.5
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 2.7e-73 280.4 536 38.6
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 3.5e-73 280.0 573 37.0
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 1.3e-72 278.1 519 40.5
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 3.9e-72 276.6 537 37.1
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 6.7e-72 275.8 557 38.1
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.5e-68 264.6 526 37.1
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 2.0e-68 264.2 463 40.0
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 3.4e-68 263.5 335 47.5
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 7.7e-68 262.3 440 40.5
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 2.9e-67 260.4 556 35.3
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 6.5e-67 259.2 586 36.5
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 1.4e-64 251.5 465 37.8
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 7.4e-63 245.7 528 36.2
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 2.6e-60 237.3 537 35.2
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 7.2e-58 229.2 525 35.4
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 8.8e-56 222.2 477 36.7
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 2.0e-55 221.1 548 34.3
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 4.4e-55 219.9 272 46.0
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 1.3e-54 218.4 517 33.7
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 1.7e-54 218.0 558 31.9
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 2.2e-54 217.6 551 33.0
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 6.3e-54 216.1 309 41.7
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 1.6e-49 201.4 385 38.4
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 8.8e-48 195.7 533 33.2
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 1.4e-45 188.3 269 40.5
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 1.5e-42 178.3 455 34.3
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 9.8e-39 165.6 396 34.3
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 2.2e-38 164.5 323 34.4
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 1.4e-32 145.2 446 33.6
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 2.3e-32 144.4 497 28.8
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 3.0e-32 144.1 447 33.8
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 1.2e-31 142.1 564 29.8
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 2.0e-31 141.4 571 27.8
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 1.9e-26 124.8 193 36.8
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 4.0e-24 117.1 262 34.7
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 7.5e-23 112.8 428 29.2
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 4.4e-15 87.0 225 32.0
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 5.8e-15 86.7 184 39.7
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 3.7e-14 84.0 141 31.2
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.7e-12 77.8 101 47.5
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 2.3e-11 74.7 146 40.4
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 8.6e-11 72.8 53 60.4
C03p92730 Brassica napus HOM05D002452 ORTHO05D006766 1.2e-07 62.4 70 57.1
A06p29200 Brassica napus HOM05D000817 ORTHO05D000702 5.8e-07 60.1 60 61.7
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 7.5e-07 59.7 258 30.2
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 4.9e-06 57.0 37 67.6


User provided reference genes

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