Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 4.1e-50 201.1 99 100.0
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 4.4e-28 127.9 92 70.7
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 8.3e-27 123.6 90 68.9
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.3e-24 116.3 87 70.1
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 8.6e-16 87.0 101 52.5
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 5.6e-15 84.3 93 55.9
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 9.5e-15 83.6 92 55.4
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 1.6e-14 82.8 109 49.5
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 1.6e-14 82.8 109 49.5
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 1.6e-14 82.8 79 58.2
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 2.8e-14 82.0 63 65.1
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 2.8e-14 82.0 82 58.5
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 3.6e-14 81.6 63 66.7
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 4.7e-14 81.3 109 48.6
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 4.7e-14 81.3 74 58.1
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 6.2e-14 80.9 82 57.3
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 6.2e-14 80.9 97 48.5
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 8.1e-14 80.5 74 59.5
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 1.1e-13 80.1 76 56.6
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 1.1e-13 80.1 92 53.3
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.1e-13 80.1 92 53.3
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.1e-13 80.1 92 53.3
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 1.8e-13 79.3 109 46.8
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 1.8e-13 79.3 109 46.8
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.8e-13 79.3 91 53.8
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 1.8e-13 79.3 63 63.5
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 3.1e-13 78.6 109 45.9
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.1e-13 78.6 92 53.3
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 3.1e-13 78.6 75 54.7
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 4.0e-13 78.2 109 47.7
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 4.0e-13 78.2 109 47.7
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 5.2e-13 77.8 71 60.6
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 5.2e-13 77.8 65 63.1
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 5.2e-13 77.8 73 53.4
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 8.9e-13 77.0 108 46.3
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 8.9e-13 77.0 74 52.7
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 1.2e-12 76.6 71 57.7
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 1.2e-12 76.6 97 50.5
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.2e-12 76.6 63 61.9
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 1.2e-12 76.6 63 61.9
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 1.5e-12 76.3 73 53.4
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.5e-12 76.3 64 60.9
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 1.5e-12 76.3 109 45.9
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.5e-12 76.3 74 55.4
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.5e-12 76.3 74 55.4
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.5e-12 76.3 74 55.4
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 1.5e-12 76.3 63 61.9
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 1.5e-12 76.3 106 43.4
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 2.6e-12 75.5 63 61.9
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 2.6e-12 75.5 67 58.2
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 2.6e-12 75.5 107 40.2
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 3.4e-12 75.1 71 59.2
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 3.4e-12 75.1 71 59.2
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 3.4e-12 75.1 70 60.0
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 4.4e-12 74.7 111 45.0
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 4.4e-12 74.7 104 47.1
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 4.4e-12 74.7 71 57.7
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 4.4e-12 74.7 73 56.2
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 4.4e-12 74.7 109 44.0
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 4.4e-12 74.7 103 41.7
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 4.4e-12 74.7 65 58.5
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 5.8e-12 74.3 65 60.0
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 5.8e-12 74.3 98 39.8
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 7.5e-12 73.9 98 39.8
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 9.9e-12 73.6 86 47.7
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 1.3e-11 73.2 63 60.3
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 1.3e-11 73.2 63 60.3
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 1.7e-11 72.8 63 61.9
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 2.2e-11 72.4 44 75.0
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 2.2e-11 72.4 75 54.7
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 2.9e-11 72.0 71 54.9
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 3.7e-11 71.6 93 45.2
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.7e-11 71.6 69 58.0
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.7e-11 71.6 69 58.0
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.7e-11 71.6 69 58.0
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 3.7e-11 71.6 81 45.7
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 4.9e-11 71.2 67 52.2
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 4.9e-11 71.2 70 52.9
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 4.9e-11 71.2 101 39.6
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 4.9e-11 71.2 95 45.3
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 8.3e-11 70.5 61 65.6
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 2.4e-10 68.9 75 48.0
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 2.4e-10 68.9 64 54.7
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 2.4e-10 68.9 63 57.1
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 4.1e-10 68.2 61 63.9
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 5.4e-10 67.8 62 53.2
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 5.4e-10 67.8 62 53.2
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 5.4e-10 67.8 61 62.3
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 5.4e-10 67.8 62 53.2
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 5.4e-10 67.8 52 63.5
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 9.2e-10 67.0 77 48.1
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.2e-09 66.6 94 38.3
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.2e-09 66.6 94 38.3
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 1.2e-09 66.6 93 49.5
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 1.6e-09 66.2 83 42.2
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 1.6e-09 66.2 81 44.4
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 3.5e-09 65.1 70 51.4
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 3.5e-09 65.1 70 51.4
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 4.6e-09 64.7 77 48.1
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 4.6e-09 64.7 61 55.7
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 1.0e-08 63.5 82 45.1
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.3e-08 63.2 94 37.2
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 1.3e-08 63.2 84 44.0
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.7e-08 62.8 89 42.7
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 1.7e-08 62.8 62 54.8
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 3.0e-08 62.0 50 58.0
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 6.6e-08 60.8 69 47.8
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 6.6e-08 60.8 68 48.5
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 6.6e-08 60.8 93 39.8
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 8.6e-08 60.5 69 47.8
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 1.1e-07 60.1 50 58.0
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 1.1e-07 60.1 82 43.9
TAR381G0361 Trochodendron aralioides HOM05D004520 ORTHO05D005520 1.5e-07 59.7 37 67.6
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 2.5e-07 58.9 87 37.9
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 3.3e-07 58.5 51 52.9
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 3.3e-07 58.5 80 45.0
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 4.3e-07 58.2 50 56.0
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.3e-07 58.2 61 52.5
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.3e-07 58.2 61 52.5
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 4.3e-07 58.2 61 52.5
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 4.3e-07 58.2 99 40.4
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 5.6e-07 57.8 66 48.5
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 7.3e-07 57.4 66 43.9
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 7.3e-07 57.4 74 45.9
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 9.5e-07 57.0 94 41.5
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.6e-06 56.2 87 39.1
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 2.8e-06 55.5 43 53.5
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 3.6e-06 55.1 106 34.0
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 6.2e-06 54.3 64 46.9


User provided reference genes

Program Settings