Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1758.0 858 100.0
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1645.6 858 93.5
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1614.0 858 92.0
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1523.8 867 85.6
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1523.5 862 85.6
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1504.2 863 84.2
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1503.8 863 84.2
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1503.4 863 84.2
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1502.3 863 84.1
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1493.8 863 83.9
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1492.2 863 83.9
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1438.7 861 79.9
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1435.6 861 81.0
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 0.0e+00 1304.7 690 90.7
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1283.9 864 70.6
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1267.3 870 69.8
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1266.1 866 70.8
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1262.7 861 69.7
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1258.4 861 70.2
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1252.3 862 69.4
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1249.6 868 68.5
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1248.0 862 69.0
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1247.3 870 68.7
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1242.6 862 68.8
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1233.4 867 67.6
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1231.1 859 68.6
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1231.1 867 67.9
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1229.5 859 68.6
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1223.0 864 67.9
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1218.8 868 68.0
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1218.4 869 66.9
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1217.6 867 66.8
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1216.4 866 67.1
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1214.5 861 68.1
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1213.7 872 66.7
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1213.4 877 65.8
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1212.2 859 67.8
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1211.4 869 67.4
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1209.1 866 66.9
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1209.1 864 67.5
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1209.1 867 66.9
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1209.1 859 67.4
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1208.7 874 66.9
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1207.6 860 66.6
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1205.7 864 67.2
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1204.1 865 67.3
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1203.3 866 67.4
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1201.4 873 66.2
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1196.4 861 66.2
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1196.0 873 66.1
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1193.7 866 67.2
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1193.3 865 66.4
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1192.6 867 66.7
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1192.2 866 66.1
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1191.8 868 66.5
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1191.0 863 65.5
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1189.1 859 66.1
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1186.4 862 66.1
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1185.6 859 66.0
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1184.9 866 65.4
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1184.9 861 66.2
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1181.0 859 66.4
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1179.5 867 66.0
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1178.3 866 66.3
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1176.4 858 65.9
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1175.6 864 65.3
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1174.5 864 66.1
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1174.1 871 65.2
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1172.1 866 66.3
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1171.8 869 64.3
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1166.8 863 64.4
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1166.0 866 65.2
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1165.6 885 64.6
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1165.2 877 65.2
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1163.7 864 65.6
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1162.1 863 64.2
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1161.7 885 63.1
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1161.0 866 64.7
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1161.0 874 64.5
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1160.2 864 65.3
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1152.9 875 63.0
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1152.5 866 64.4
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1149.8 869 64.4
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1142.5 861 64.3
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1140.6 866 63.9
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1137.9 858 64.3
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1134.4 865 62.5
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1106.3 862 63.2
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1101.3 866 60.9
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1097.4 827 64.9
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 6.4e-309 1063.9 841 62.9
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 1.1e-300 1036.6 744 67.9
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 5.1e-298 1027.7 859 59.8
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 2.1e-296 1022.3 859 57.9
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 1.1e-295 1020.0 647 73.4
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 9.3e-292 1006.9 692 67.9
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 1.1e-289 1000.0 859 56.7
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 7.6e-278 960.7 868 53.5
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 1.4e-276 956.4 860 54.1
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 2.8e-272 942.2 855 55.2
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 8.2e-264 914.1 867 51.2
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 3.9e-197 692.6 761 47.2
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.5e-156 557.8 389 68.9
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 8.2e-147 525.4 473 55.6
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 1.6e-137 494.6 460 57.4
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.2e-110 405.2 358 57.3
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 2.7e-81 307.8 307 54.7
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 3.3e-63 247.7 169 69.2
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 9.9e-60 236.1 205 56.6
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 1.1e-45 189.5 175 56.6
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 2.3e-40 171.8 195 48.7
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 6.7e-40 170.2 171 50.3
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 9.4e-34 149.8 217 39.6
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 9.1e-29 133.3 149 47.0
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 6.1e-25 120.6 85 68.2
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 2.6e-23 115.2 86 65.1
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 2.2e-22 112.1 76 67.1
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 6.3e-22 110.5 120 50.8
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 7.0e-21 107.1 90 58.9
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 4.5e-20 104.4 81 60.5
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 7.7e-20 103.6 111 52.3
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.7e-14 85.9 197 26.9
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 1.1e-13 83.2 329 25.2
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 3.1e-13 81.6 240 27.5
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 4.1e-13 81.3 312 26.9
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.2e-12 79.7 305 26.2
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.0e-11 76.6 329 25.2
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 1.7e-11 75.9 334 24.3
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 2.2e-11 75.5 328 22.9
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 2.2e-11 75.5 301 22.6
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 2.5e-10 72.0 65 56.9
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 2.7e-09 68.6 94 42.6
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 3.6e-09 68.2 300 23.7
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.8e-08 65.9 312 23.1
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 6.8e-08 63.9 330 21.5
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 2.0e-07 62.4 168 27.4
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 3.4e-07 61.6 217 27.2
SMO348G0088 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 4.4e-07 61.2 301 24.9
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 5.7e-07 60.8 32 78.1
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 5.7e-07 60.8 267 25.8
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 9.8e-07 60.1 305 23.6
PRCOL_00001343 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.7e-06 59.3 221 25.8
Cre02.g117350 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 4.8e-06 57.8 217 21.7
Pp3c6_25370 Physcomitrium patens HOM05D008676 ORTHO05D010936 4.8e-06 57.8 295 24.1


User provided reference genes

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