Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 0.0e+00 1289.6 970 100.0
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.9e-179 634.0 529 75.4
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 5.1e-169 599.4 519 68.2
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 4.6e-114 416.8 502 51.6
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 2.3e-113 414.5 540 49.3
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.2e-101 375.6 664 46.2
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 9.5e-83 312.8 550 43.6
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 8.0e-82 309.7 550 43.5
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 1.8e-81 308.5 509 44.6
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 1.5e-80 305.4 541 39.6
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 7.0e-78 296.6 563 39.6
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 2.9e-76 291.2 542 39.3
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 8.4e-47 193.4 554 31.4
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 6.6e-36 157.1 274 38.7
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 2.1e-34 152.1 228 43.0
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.8e-34 151.8 227 41.0
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 4.8e-34 151.0 296 37.5
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 6.9e-33 147.1 200 45.0
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.6e-32 145.2 286 35.3
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 4.5e-32 144.4 204 40.7
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 4.5e-32 144.4 163 50.9
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 9.9e-32 143.3 202 45.0
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 9.9e-32 143.3 202 43.6
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 2.2e-31 142.1 202 43.1
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 2.2e-31 142.1 265 36.2
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 3.8e-31 141.4 295 33.2
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 4.9e-31 141.0 231 39.4
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 6.7e-28 130.6 277 36.1
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 6.7e-28 130.6 272 35.7
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 9.6e-27 126.7 301 31.9
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 1.3e-26 126.3 199 38.7
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.1e-26 125.6 221 37.1
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 2.8e-26 125.2 176 43.8
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 5.3e-25 120.9 295 30.8
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 9.0e-25 120.2 202 37.1
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 2.2e-23 115.5 296 30.7
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 2.4e-22 112.1 315 29.8
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 3.2e-22 111.7 280 30.7
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 9.3e-22 110.2 280 30.4
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 1.2e-21 109.8 280 30.4
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.7e-21 108.6 277 31.4
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 2.7e-21 108.6 256 30.5
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 6.0e-21 107.5 256 30.5
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 3.0e-20 105.1 206 34.0
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 3.9e-20 104.8 191 34.6
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 4.3e-19 101.3 228 32.0
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 2.8e-18 98.6 108 47.2
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 1.1e-17 96.7 117 41.9
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 1.1e-17 96.7 177 32.8
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 1.4e-17 96.3 190 33.7
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 1.4e-17 96.3 108 45.4
Sp1g19100 Schrenkiella parvula HOM05D012602 ORTHO05D003486 1.8e-17 95.9 200 35.5
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 3.1e-17 95.1 120 40.8
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 9.0e-17 93.6 273 29.7
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 2.0e-16 92.4 236 31.8
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 2.6e-16 92.0 208 32.7
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 3.4e-16 91.7 193 29.5
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 7.6e-16 90.5 114 43.9
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 7.6e-16 90.5 137 37.2
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 1.7e-15 89.4 178 29.8
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 2.2e-15 89.0 134 39.6
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 2.9e-15 88.6 138 39.1
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 4.9e-15 87.8 163 35.0
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 6.5e-15 87.4 132 41.7
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 6.5e-15 87.4 146 38.4
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 1.4e-14 86.3 269 27.1
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 2.5e-14 85.5 141 36.9
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.2e-14 85.1 189 29.1
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 4.2e-14 84.7 102 46.1
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 5.5e-14 84.3 122 37.7
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 7.1e-14 84.0 184 29.9
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 9.3e-14 83.6 267 26.6
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 9.3e-14 83.6 182 33.0
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 9.3e-14 83.6 278 24.8
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 1.2e-13 83.2 99 44.4
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 1.2e-13 83.2 199 32.2
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 1.2e-13 83.2 205 31.2
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.2e-13 83.2 101 43.6
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 1.6e-13 82.8 102 39.2
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 2.1e-13 82.4 105 41.9
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 3.5e-13 81.6 116 33.6
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 3.5e-13 81.6 145 33.1
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 3.5e-13 81.6 99 43.4
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 3.5e-13 81.6 245 25.7
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 3.5e-13 81.6 138 34.1
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 3.5e-13 81.6 193 31.6
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 4.6e-13 81.3 102 43.1
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 4.6e-13 81.3 150 28.7
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 6.0e-13 80.9 154 31.8
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 7.9e-13 80.5 288 25.3
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 1.0e-12 80.1 209 32.5
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.0e-12 80.1 108 44.4
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 1.0e-12 80.1 138 31.2
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 1.0e-12 80.1 278 24.1
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 1.3e-12 79.7 99 43.4
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 1.3e-12 79.7 107 41.1
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 1.3e-12 79.7 289 27.3
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 1.8e-12 79.3 202 30.2
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 3.0e-12 78.6 264 28.4
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 3.0e-12 78.6 166 32.5
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 5.1e-12 77.8 136 33.8
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 5.1e-12 77.8 104 41.3
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 6.7e-12 77.4 199 30.2
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 8.7e-12 77.0 138 32.6
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 1.1e-11 76.6 311 26.4
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 1.5e-11 76.3 128 36.7
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 1.9e-11 75.9 290 25.9
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 3.3e-11 75.1 201 29.9
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 3.3e-11 75.1 111 36.0
PSO528G0175 Papaver somniferum HOM05D020877 ORTHO05D003486 3.3e-11 75.1 198 29.3
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 3.3e-11 75.1 241 29.5
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 5.7e-11 74.3 169 30.8
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 5.7e-11 74.3 136 33.8
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 9.7e-11 73.6 120 36.7
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 9.7e-11 73.6 202 30.2
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 9.7e-11 73.6 107 32.7
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 9.7e-11 73.6 112 35.7
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 1.3e-10 73.2 208 30.3
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 1.6e-10 72.8 185 25.9
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.2e-10 72.4 215 29.3
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 2.2e-10 72.4 103 33.0
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 2.8e-10 72.0 120 36.7
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 3.7e-10 71.6 100 41.0
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 4.8e-10 71.2 120 35.8
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 4.8e-10 71.2 227 28.6
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 4.8e-10 71.2 182 32.4
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 4.8e-10 71.2 101 38.6
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 8.2e-10 70.5 201 28.9
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.1e-09 70.1 159 32.1
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 1.1e-09 70.1 103 35.9
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 1.8e-09 69.3 105 34.3
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 2.4e-09 68.9 185 25.4
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 3.1e-09 68.6 146 30.8
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 4.1e-09 68.2 149 31.5
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 4.1e-09 68.2 102 34.3
Ca_12735_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 6.9e-09 67.4 152 30.9
Ca_12741_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 6.9e-09 67.4 152 30.9
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 9.0e-09 67.0 108 38.0
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 9.0e-09 67.0 108 35.2
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 1.2e-08 66.6 123 34.1
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 2.0e-08 65.9 170 31.2
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.6e-08 65.5 102 34.3
HanXRQChr05g0149711 Helianthus annuus HOM05D006236 ORTHO05D003486 2.6e-08 65.5 135 35.6
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 2.6e-08 65.5 146 30.8
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 4.5e-08 64.7 106 34.9
Ciclev10003901m.g Citrus clementina HOM05D006236 ORTHO05D003486 5.9e-08 64.3 133 33.8
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 5.9e-08 64.3 153 26.1
Lsat_1_v5_gn_6_110341 Lactuca sativa HOM05D006236 ORTHO05D003486 5.9e-08 64.3 105 41.0
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 7.6e-08 63.9 106 34.9
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 7.6e-08 63.9 91 38.5
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 7.6e-08 63.9 95 35.8
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.0e-07 63.5 311 25.4
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.0e-07 63.5 105 34.3
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.0e-07 63.5 109 35.8
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.3e-07 63.2 126 32.5
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 1.7e-07 62.8 147 29.9
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 2.9e-07 62.0 106 33.0
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 2.9e-07 62.0 106 33.0
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 5.0e-07 61.2 129 30.2
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 5.0e-07 61.2 129 30.2
AagrBONN_evm.TU.Sc2ySwM_228.1542 Anthoceros agrestis HOM05D002377 ORTHO05D003486 1.1e-06 60.1 120 32.5
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 2.5e-06 58.9 146 28.8
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.2e-06 58.5 128 29.7
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 3.2e-06 58.5 104 27.9
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 3.2e-06 58.5 104 27.9
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 5.5e-06 57.8 66 39.4
Zm00001eb385310 Zea mays HOM05D006236 ORTHO05D003486 9.3e-06 57.0 91 36.3


User provided reference genes

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