Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 1.8e-94 349.7 245 100.0
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 4.5e-74 282.0 245 83.7
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 1.8e-67 260.0 254 74.0
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 7.0e-67 258.1 249 71.5
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 7.7e-66 254.6 255 75.3
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 3.8e-65 252.3 260 74.2
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 6.5e-65 251.5 260 74.2
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 4.0e-62 242.3 157 80.9
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 6.5e-57 224.9 169 71.6
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 3.6e-55 219.2 140 80.0
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 4.0e-54 215.7 246 53.3
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 4.0e-54 215.7 247 73.7
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 2.6e-53 213.0 246 69.9
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 3.7e-52 209.1 135 79.3
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 7.8e-50 201.4 139 68.3
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 1.9e-48 196.8 161 64.0
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 7.3e-48 194.9 139 67.6
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 5.2e-46 188.7 139 61.2
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 6.8e-46 188.3 169 56.8
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 8.9e-46 188.0 161 67.1
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 2.6e-45 186.4 139 60.4
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 3.7e-44 182.6 139 61.9
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 8.3e-44 181.4 163 56.4
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 2.3e-41 173.3 163 54.6
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 2.8e-39 166.4 139 58.3
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 8.0e-39 164.9 139 58.3
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 1.1e-38 164.5 162 51.9
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 3.1e-38 162.9 139 58.3
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 8.9e-38 161.4 139 57.6
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 2.6e-37 159.8 139 56.8
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 4.4e-37 159.1 139 56.1
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 7.5e-37 158.3 162 49.4
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 9.8e-37 157.9 158 53.2
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 2.9e-36 156.4 139 56.1
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 3.7e-36 156.0 139 53.2
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 3.7e-36 156.0 167 50.9
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 4.9e-36 155.6 160 48.1
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 4.9e-36 155.6 149 51.7
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 4.9e-36 155.6 139 58.3
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 6.4e-36 155.2 139 54.7
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 8.3e-36 154.8 139 53.2
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 8.3e-36 154.8 161 51.6
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 8.3e-36 154.8 139 57.6
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 8.3e-36 154.8 162 50.6
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 1.4e-35 154.1 141 57.4
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 1.9e-35 153.7 139 53.2
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 3.2e-35 152.9 158 48.7
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 3.2e-35 152.9 139 56.1
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 5.4e-35 152.1 139 56.8
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 5.4e-35 152.1 140 57.9
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 7.0e-35 151.8 137 54.7
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 7.0e-35 151.8 158 48.7
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 9.2e-35 151.4 139 54.7
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 1.2e-34 151.0 139 54.0
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 2.0e-34 150.2 137 54.7
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 2.7e-34 149.8 140 55.7
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 2.7e-34 149.8 163 51.5
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 6.0e-34 148.7 250 39.6
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 6.0e-34 148.7 162 48.1
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 6.0e-34 148.7 139 52.5
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 7.8e-34 148.3 249 40.6
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 1.0e-33 147.9 139 54.0
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 1.0e-33 147.9 164 50.6
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 1.0e-33 147.9 156 48.7
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 1.0e-33 147.9 250 40.4
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 1.3e-33 147.5 139 52.5
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 2.3e-33 146.7 162 50.0
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 2.3e-33 146.7 139 52.5
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 2.3e-33 146.7 266 34.6
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 6.6e-33 145.2 140 57.1
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 6.6e-33 145.2 139 51.1
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 1.1e-32 144.4 165 50.9
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 3.3e-32 142.9 139 51.1
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 3.3e-32 142.9 139 56.1
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 5.6e-32 142.1 165 46.1
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 7.3e-32 141.7 163 46.6
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 4.7e-31 139.0 139 52.5
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 4.7e-31 139.0 249 38.6
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 6.2e-31 138.7 139 49.6
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 6.2e-31 138.7 165 45.5
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 8.1e-31 138.3 165 45.5
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 8.1e-31 138.3 162 48.1
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 1.1e-30 137.9 139 50.4
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 1.4e-30 137.5 139 53.2
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 1.8e-30 137.1 163 49.1
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.8e-30 137.1 139 50.4
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 1.8e-30 137.1 159 49.7
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 2.3e-30 136.7 156 47.4
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 4.0e-30 136.0 253 39.1
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 5.2e-30 135.6 137 52.6
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 5.2e-30 135.6 139 48.2
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 5.2e-30 135.6 139 49.6
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 1.2e-29 134.4 249 39.0
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 4.4e-29 132.5 139 48.2
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 1.7e-28 130.6 107 64.5
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 3.7e-28 129.4 164 47.6
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 4.9e-28 129.0 139 50.4
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 9.2e-27 124.8 261 34.9
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 2.7e-26 123.2 164 40.2
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 3.0e-25 119.8 99 60.6
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 3.0e-25 119.8 158 41.1
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 1.9e-24 117.1 99 61.6
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 2.5e-24 116.7 83 73.5
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 5.6e-24 115.5 140 47.9
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 2.1e-23 113.6 140 45.0
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 8.1e-23 111.7 139 43.2
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 1.8e-22 110.5 167 37.1
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 8.9e-22 108.2 162 43.2
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 9.9e-21 104.8 165 37.0
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 1.3e-20 104.4 138 42.0
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 1.7e-20 104.0 104 51.0
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 2.2e-20 103.6 140 44.3
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 2.2e-20 103.6 139 41.0
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 2.4e-19 100.1 200 34.0
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 7.8e-18 95.1 130 36.9
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.0e-17 94.7 130 36.9
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 1.3e-17 94.4 158 38.0
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 1.7e-17 94.0 244 25.4
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 2.3e-17 93.6 209 29.7
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 8.7e-17 91.7 91 53.8
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 9.6e-16 88.2 87 50.6
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 1.2e-15 87.8 116 42.2
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 1.6e-15 87.4 132 35.6
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 2.4e-14 83.6 85 50.6
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 1.2e-13 81.3 133 39.1
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 2.2e-12 77.0 91 47.3
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 9.3e-11 71.6 71 50.7
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 1.3e-09 67.8 105 38.1
HPP92_004419 Vanilla planifolia HOM05D024549 ORTHO05D006778 5.6e-08 62.4 129 31.8
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 9.6e-08 61.6 79 39.2
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 1.3e-07 61.2 97 36.1
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 3.1e-06 56.6 85 41.2
BraA09t38820Z Brassica rapa HOM05D000136 ORTHO05D000080 5.3e-06 55.8 108 40.7
A09p32850 Brassica napus HOM05D000136 ORTHO05D000080 6.9e-06 55.5 108 39.8
Ciclev10022629m.g Citrus clementina HOM05D000881 ORTHO05D000666 6.9e-06 55.5 87 36.8
ECA236G0979 Erigeron canadensis HOM05D000136 ORTHO05D000080 9.0e-06 55.1 94 38.3
Lsat_1_v5_gn_5_171121 Lactuca sativa HOM05D000136 ORTHO05D000080 9.0e-06 55.1 94 38.3


User provided reference genes

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