Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s2310 Capsella rubella HOM05D006241 ORTHO05D007842 1.7e-36 155.2 66 100.0
Sp5g31350 Schrenkiella parvula HOM05D006241 ORTHO05D007842 1.7e-36 155.2 66 100.0
BcaC08g47115 Brassica carinata HOM05D006241 ORTHO05D007842 1.9e-35 151.8 66 97.0
AL2G36270 Arabidopsis lyrata HOM05D006241 ORTHO05D007842 3.2e-35 151.0 64 100.0
AT1G76200 Arabidopsis thaliana HOM05D006241 ORTHO05D007842 3.2e-35 151.0 64 100.0
CARHR069760 Cardamine hirsuta HOM05D006241 ORTHO05D007842 9.4e-35 149.4 64 98.4
BraA07t31707Z Brassica rapa HOM05D006241 ORTHO05D007842 6.1e-34 146.7 65 95.4
BcaB02g07055 Brassica carinata HOM05D006241 ORTHO05D007842 8.0e-34 146.4 65 95.4
BcaC08g47119 Brassica carinata HOM05D006241 ORTHO05D007842 2.3e-33 144.8 66 95.5
BcaC08g47281 Brassica carinata HOM05D006241 ORTHO05D007842 2.3e-33 144.8 66 95.5
A07p41770 Brassica napus HOM05D006241 ORTHO05D007842 2.3e-33 144.8 66 95.5
C06p50150 Brassica napus HOM05D006241 ORTHO05D007842 2.3e-33 144.8 66 95.5
BolC6t40055H Brassica oleracea HOM05D006241 ORTHO05D007842 2.3e-33 144.8 66 95.5
A07p28590 Brassica napus HOM05D006241 ORTHO05D007842 3.0e-33 144.4 65 93.8
Thhalv10019410m.g Eutrema salsugineum HOM05D006241 ORTHO05D007842 1.2e-32 142.5 64 98.4
Aa31LG4G6300 Aethionema arabicum HOM05D006241 ORTHO05D007842 1.3e-31 139.0 64 90.6
BraA07t30500Z Brassica rapa HOM05D006241 ORTHO05D007842 6.3e-31 136.7 65 92.3
FvH4_2g37630 Fragaria vesca HOM05D006241 ORTHO05D007842 3.1e-30 134.4 71 84.5
BcaB05g24973 Brassica carinata HOM05D006241 ORTHO05D007842 4.1e-30 134.0 58 94.8
BraA02t07081Z Brassica rapa HOM05D006241 ORTHO05D007842 5.3e-30 133.7 59 94.9
THA.LOC109116669 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 9.1e-30 132.9 69 79.7
Atru.chr13.161 Acer truncatum HOM05D006241 ORTHO05D007842 1.2e-29 132.5 70 81.4
BcaC08g45539 Brassica carinata HOM05D006241 ORTHO05D007842 1.6e-29 132.1 64 89.1
C06p32170 Brassica napus HOM05D006241 ORTHO05D007842 1.6e-29 132.1 64 89.1
BolC6t38340H Brassica oleracea HOM05D006241 ORTHO05D007842 1.6e-29 132.1 64 89.1
COL.COLO4_21601 Corchorus olitorius HOM05D006241 ORTHO05D007842 1.6e-29 132.1 70 81.4
THA.LOC104811457 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 1.6e-29 132.1 69 78.3
Lj3g0010530 Lotus japonicus HOM05D006241 ORTHO05D007842 4.5e-29 130.6 60 88.3
Prupe.1G355800 Prunus persica HOM05D006241 ORTHO05D007842 7.7e-29 129.8 67 79.1
FAN15G0812 Fragaria x ananassa HOM05D006241 ORTHO05D007842 1.0e-28 129.4 71 81.7
QL02p013848 Quercus lobata HOM05D006241 ORTHO05D007842 2.2e-28 128.3 63 79.4
arahy.Tifrunner.gnm1.ann1.1F1YZI Arachis hypogaea HOM05D006241 ORTHO05D007842 6.5e-28 126.7 69 76.8
arahy.Tifrunner.gnm1.ann1.1NSU2H Arachis hypogaea HOM05D006241 ORTHO05D007842 6.5e-28 126.7 69 76.8
arahy.Tifrunner.gnm1.ann1.4R2MNP Arachis hypogaea HOM05D006241 ORTHO05D007842 6.5e-28 126.7 69 76.8
arahy.Tifrunner.gnm1.ann1.L8CN1K Arachis hypogaea HOM05D006241 ORTHO05D007842 6.5e-28 126.7 69 76.8
MELO3C017010.2 Cucumis melo HOM05D006241 ORTHO05D007842 6.5e-28 126.7 68 77.9
Ca_19011_v3 Cicer arietinum L. HOM05D006241 ORTHO05D007842 8.5e-28 126.3 60 83.3
CSS0008517 Camellia sinensis var. sinensis HOM05D006241 ORTHO05D007842 1.5e-27 125.6 68 76.5
Sabra05G0192000 Salix brachista HOM05D006241 ORTHO05D007842 1.5e-27 125.6 64 81.2
Potri.005G248600 Populus trichocarpa HOM05D006241 ORTHO05D007842 2.5e-27 124.8 64 79.7
PGR031G1817 Punica granatum HOM05D006241 ORTHO05D007842 2.5e-27 124.8 71 76.1
Thecc.08G056300 Theobroma cacao HOM05D006241 ORTHO05D007842 2.5e-27 124.8 71 77.5
Duzib093G0667 Durio zibethinus HOM05D006241 ORTHO05D007842 3.2e-27 124.4 66 80.3
Duzib116G0823 Durio zibethinus HOM05D006241 ORTHO05D007842 3.2e-27 124.4 66 80.3
Manes.05G136000 Manihot esculenta HOM05D006241 ORTHO05D007842 3.2e-27 124.4 60 83.3
CsaV3_4G037120 Cucumis sativus L. HOM05D006241 ORTHO05D007842 5.5e-27 123.6 70 75.7
Manes.18G006720 Manihot esculenta HOM05D006241 ORTHO05D007842 5.5e-27 123.6 60 83.3
CiPaw.07G140100 Carya illinoinensis HOM05D006241 ORTHO05D007842 9.4e-27 122.9 68 76.5
Gorai.009G189100 Gossypium raimondii HOM05D006241 ORTHO05D007842 9.4e-27 122.9 66 78.8
Psat7g177480 Pisum sativum HOM05D006241 ORTHO05D007842 9.4e-27 122.9 61 80.3
Cpa.g.sc222.6 Carica papaya HOM05D006241 ORTHO05D007842 1.2e-26 122.5 72 75.0
Potri.002G012700 Populus trichocarpa HOM05D006241 ORTHO05D007842 1.2e-26 122.5 64 78.1
SGA_v2.0_scaffold25G11191 Striga asiatica HOM05D006241 ORTHO05D007842 1.2e-26 122.5 62 82.3
Migut.N03197 Erythranthe guttata HOM05D006241 ORTHO05D007842 1.6e-26 122.1 64 81.2
Gohir.A01G107600 Gossypium hirsutum HOM05D006241 ORTHO05D007842 1.6e-26 122.1 71 76.1
CiPaw.08G071900 Carya illinoinensis HOM05D006241 ORTHO05D007842 2.7e-26 121.3 71 76.1
CAN.G311.105 Capsicum annuum HOM05D006241 ORTHO05D007842 3.6e-26 120.9 67 79.1
Cc10_g00830 Coffea canephora HOM05D006241 ORTHO05D007842 3.6e-26 120.9 63 76.2
Gohir.D01G094000 Gossypium hirsutum HOM05D006241 ORTHO05D007842 3.6e-26 120.9 66 77.3
Gohir.D05G183800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 3.6e-26 120.9 66 77.3
Gorai.002G119300 Gossypium raimondii HOM05D006241 ORTHO05D007842 3.6e-26 120.9 66 77.3
Nn5g30908 Nelumbo nucifera HOM05D006241 ORTHO05D007842 6.1e-26 120.2 70 70.0
PGSC0003DMG400009898 Solanum tuberosum HOM05D006241 ORTHO05D007842 6.1e-26 120.2 67 79.1
Gohir.A05G180800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 8.0e-26 119.8 66 77.3
Glyma.11G099500 Glycine max HOM05D006241 ORTHO05D007842 1.0e-25 119.4 66 78.8
Glyma.12G025500 Glycine max HOM05D006241 ORTHO05D007842 1.0e-25 119.4 66 77.3
Duzib041G0756 Durio zibethinus HOM05D006241 ORTHO05D007842 1.4e-25 119.0 71 73.2
TWI56G0163 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 1.4e-25 119.0 59 83.1
Ciclev10010113m.g Citrus clementina HOM05D006241 ORTHO05D007842 1.8e-25 118.6 70 71.4
Lalb_Chr10g0094931 Lupinus albus HOM05D006241 ORTHO05D007842 1.8e-25 118.6 59 81.4
TWI12G0416 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 2.3e-25 118.2 59 83.1
CANSAT54G0965 Cannabis sativa HOM05D006241 ORTHO05D007842 4.0e-25 117.5 67 71.6
Lsat_1_v5_gn_8_133721 Lactuca sativa HOM05D006241 ORTHO05D007842 5.2e-25 117.1 69 75.4
CDE05G0950 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 6.8e-25 116.7 63 73.0
CDE05G1511 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 6.8e-25 116.7 63 73.0
PSO170G5266 Papaver somniferum HOM05D006241 ORTHO05D007842 8.8e-25 116.3 63 74.6
PSO357G0248 Papaver somniferum HOM05D006241 ORTHO05D007842 8.8e-25 116.3 63 74.6
TAR376G1175 Trochodendron aralioides HOM05D006241 ORTHO05D007842 8.8e-25 116.3 57 77.2
Eucgr.F01733 Eucalyptus grandis HOM05D006241 ORTHO05D007842 1.2e-24 115.9 64 75.0
Lalb_Chr17g0337811 Lupinus albus HOM05D006241 ORTHO05D007842 1.2e-24 115.9 65 75.4
GSVIVG01008691001 Vitis vinifera HOM05D006241 ORTHO05D007842 1.2e-24 115.9 54 79.6
Actinidia17033 Actinidia chinensis HOM05D006241 ORTHO05D007842 2.0e-24 115.2 72 69.4
Phvul.011G027800 Phaseolus vulgaris HOM05D006241 ORTHO05D007842 2.6e-24 114.8 65 75.4
ECA248G1104 Erigeron canadensis HOM05D006241 ORTHO05D007842 3.4e-24 114.4 72 72.2
TAR381G1678 Trochodendron aralioides HOM05D006241 ORTHO05D007842 3.4e-24 114.4 67 68.7
Cfa014051 Carpinus fangiana HOM05D006241 ORTHO05D007842 5.7e-24 113.6 67 71.6
Dinv39579 Davidia involucrata HOM05D006241 ORTHO05D007842 9.8e-24 112.8 65 70.8
Actinidia15484 Actinidia chinensis HOM05D006241 ORTHO05D007842 1.3e-23 112.5 72 66.7
Dinv31923 Davidia involucrata HOM05D006241 ORTHO05D007842 2.2e-23 111.7 64 71.9
Aqoxy6G01804 Aquilegia oxysepala HOM05D006241 ORTHO05D007842 2.8e-23 111.3 54 79.6
ATR0661G361 Amborella trichopoda HOM05D006241 ORTHO05D007842 5.4e-22 107.1 68 67.6
AagrBONN_evm.TU.Sc2ySwM_117.850 Anthoceros agrestis HOM05D006241 ORTHO05D007842 1.6e-21 105.5 55 72.7
Os05g0122900 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 5.9e-21 103.6 57 73.7
BolC2t09367H Brassica oleracea HOM05D006241 ORTHO05D007842 1.3e-20 102.4 47 93.6
Pp3c21_21340 Physcomitrium patens HOM05D006241 ORTHO05D007842 3.8e-20 100.9 69 60.9
Pp3c18_1920 Physcomitrium patens HOM05D006241 ORTHO05D007842 5.0e-20 100.5 68 60.3
Zm00001eb294120 Zea mays HOM05D006241 ORTHO05D007842 6.6e-20 100.1 63 68.3
Zm00001eb356460 Zea mays HOM05D006241 ORTHO05D007842 8.6e-20 99.8 56 71.4
FAN20G1861 Fragaria x ananassa HOM05D006241 ORTHO05D007842 4.2e-19 97.4 50 86.0
Mapoly0103s0030 Marchantia polymorpha HOM05D006241 ORTHO05D007842 7.2e-19 96.7 56 67.9
MD08G1003800 Malus domestica HOM05D006241 ORTHO05D007842 1.2e-18 95.9 51 78.4
Nitab4.5_0000588g0230 Nicotiana tabacum HOM05D006241 ORTHO05D007842 1.2e-18 95.9 51 78.4
RcHm_v2.0_Chr6g0304101 Rosa chinensis HOM05D006241 ORTHO05D007842 1.6e-18 95.5 50 82.0
Os06g0725400 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 2.8e-18 94.7 58 69.0
VMungo1127G1075 Vigna mungo HOM05D006241 ORTHO05D007842 4.7e-18 94.0 56 73.2
MD15G1003400 Malus domestica HOM05D006241 ORTHO05D007842 6.1e-18 93.6 50 78.0
Mapoly0108s0047 Marchantia polymorpha HOM05D006241 ORTHO05D007842 1.0e-17 92.8 59 59.3
HanXRQChr17g0555751 Helianthus annuus HOM05D006241 ORTHO05D007842 7.5e-16 86.7 46 78.3
HanXRQChr17g0554651 Helianthus annuus HOM05D006241 ORTHO05D007842 9.8e-16 86.3 46 76.1
HPP92_021050 Vanilla planifolia HOM05D006241 ORTHO05D007842 9.8e-16 86.3 47 72.3
MBI19_g43741_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 1.7e-15 85.5 46 71.7
Hund08526 Selenicereus undatus HOM05D006241 ORTHO05D007842 6.3e-15 83.6 48 70.8
SalBow6G4847 Salvia bowleyana HOM05D006241 ORTHO05D007842 1.7e-12 75.5 52 71.2
DCAR_013903 Daucus carota HOM05D006241 ORTHO05D007842 4.7e-10 67.4 48 64.6
Sabra07G0051400 Salix brachista HOM05D006241 ORTHO05D349851 8.0e-10 66.6 46 63.0
Medtr4g075160 Medicago truncatula HOM05D006241 ORTHO05D007842 1.2e-08 62.8 29 86.2
vmacro04395 Vaccinium macrocarpon HOM05D006241 ORTHO05D007842 1.5e-08 62.4 35 71.4
Ah.01g013010 Amaranthus hybridus HOM05D006241 ORTHO05D007842 4.4e-08 60.8 31 74.2
Sed0002381 Sechium edule HOM05D006241 ORTHO05D007842 4.4e-08 60.8 30 80.0
ClCG05G015200 Citrullus lanatus HOM05D006241 ORTHO05D007842 5.8e-08 60.5 30 80.0
AUR62015196 Chenopodium quinoa HOM05D006241 ORTHO05D007842 9.8e-08 59.7 31 71.0
AUR62017658 Chenopodium quinoa HOM05D006241 ORTHO05D007842 9.8e-08 59.7 31 71.0
Ah.01g001690 Amaranthus hybridus HOM05D006241 ORTHO05D007842 1.7e-07 58.9 31 71.0
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 3.7e-07 57.8 29 79.3
Nn6g31777 Nelumbo nucifera HOM05D006241 ORTHO05D007842 8.3e-07 56.6 41 61.0
DCAR_016755 Daucus carota HOM05D006241 ORTHO05D007842 1.4e-06 55.8 29 72.4
MBI19_g35281_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 1.9e-06 55.5 31 64.5


User provided reference genes

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