Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 3.9e-125 451.4 223 100.0
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 8.8e-109 397.1 221 88.2
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 5.1e-101 371.3 222 82.4
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 1.5e-100 369.8 219 82.2
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 2.6e-100 369.0 251 75.7
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 3.5e-97 358.6 221 79.2
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 4.5e-97 358.2 221 79.2
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 1.3e-96 356.7 221 79.2
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 2.2e-96 355.9 221 79.6
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 1.1e-95 353.6 219 78.5
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 1.2e-94 350.1 219 78.5
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 6.1e-94 347.8 216 80.1
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 1.4e-93 346.7 221 78.7
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 6.7e-93 344.4 221 77.4
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 2.2e-91 339.3 221 76.5
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 2.2e-91 339.3 221 76.5
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 3.1e-90 335.5 221 73.8
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 7.7e-89 330.9 239 71.1
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 6.8e-85 317.8 240 68.8
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 2.6e-84 315.8 222 67.1
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 1.3e-83 313.5 222 68.0
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 4.1e-82 308.5 222 67.6
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 5.4e-82 308.1 214 67.3
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 2.7e-81 305.8 222 66.7
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 1.0e-80 303.9 222 65.3
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.0e-80 303.9 222 64.4
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 1.3e-80 303.5 222 66.2
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 8.5e-80 300.8 219 66.2
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 1.1e-79 300.4 221 67.4
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 1.5e-79 300.1 223 65.9
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 3.2e-79 298.9 222 64.9
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 1.2e-76 290.4 231 62.8
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 2.5e-71 272.7 218 58.7
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 3.3e-71 272.3 211 62.6
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 1.6e-70 270.0 194 66.0
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 2.1e-70 269.6 216 62.0
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 4.7e-70 268.5 223 61.0
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 6.1e-70 268.1 215 60.0
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 1.0e-69 267.3 210 58.6
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 3.0e-69 265.8 211 60.2
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 4.0e-69 265.4 211 60.2
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 5.2e-69 265.0 216 59.7
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 6.8e-69 264.6 214 59.8
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 2.0e-68 263.1 218 61.0
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 3.4e-68 262.3 207 59.4
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 3.4e-68 262.3 215 60.9
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 5.7e-68 261.5 221 57.0
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 1.7e-67 260.0 198 61.1
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 4.9e-67 258.5 209 61.7
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 4.9e-67 258.5 214 57.5
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 1.1e-66 257.3 195 61.0
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.4e-66 256.9 216 56.9
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 1.4e-66 256.9 215 59.5
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 1.8e-66 256.5 211 59.7
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 2.4e-66 256.1 211 59.7
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 2.4e-66 256.1 212 56.6
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 2.4e-66 256.1 195 62.6
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 3.2e-66 255.8 216 61.1
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 5.4e-66 255.0 216 59.3
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 9.2e-66 254.2 216 59.3
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 1.2e-65 253.8 201 58.2
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 1.2e-65 253.8 211 58.3
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 1.2e-65 253.8 206 57.3
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 1.6e-65 253.4 216 59.3
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 1.6e-65 253.4 216 56.9
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 1.0e-64 250.8 218 54.6
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 1.3e-64 250.4 196 59.2
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 2.3e-64 249.6 233 54.5
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 8.6e-64 247.7 218 55.5
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 8.6e-64 247.7 164 70.7
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 1.1e-63 247.3 214 55.6
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 1.1e-63 247.3 214 56.1
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.9e-63 246.5 212 55.7
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.9e-63 246.5 212 55.7
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 2.5e-63 246.1 201 57.2
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 4.3e-63 245.4 194 61.9
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 4.3e-63 245.4 207 56.5
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 5.6e-63 245.0 221 54.3
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.2e-62 243.8 202 57.9
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.2e-62 243.8 202 57.9
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 2.1e-62 243.0 212 55.2
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 4.7e-62 241.9 208 57.2
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 6.2e-62 241.5 219 54.8
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 8.0e-62 241.1 211 55.5
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.0e-61 240.7 211 55.0
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.8e-61 240.0 208 55.3
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 2.3e-61 239.6 211 53.6
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 2.3e-61 239.6 215 54.9
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 3.1e-61 239.2 214 56.5
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 6.8e-61 238.0 219 53.9
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 6.8e-61 238.0 169 63.3
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 6.8e-61 238.0 210 55.7
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 8.9e-61 237.7 214 56.1
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 8.9e-61 237.7 211 54.0
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 2.6e-60 236.1 198 57.6
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 3.4e-60 235.7 195 58.5
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 5.8e-60 235.0 196 56.1
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 5.8e-60 235.0 212 53.8
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 5.8e-60 235.0 216 54.6
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 5.8e-60 235.0 216 54.2
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 5.8e-60 235.0 197 57.9
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 7.5e-60 234.6 215 54.4
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 1.3e-59 233.8 196 55.6
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 1.7e-59 233.4 209 55.0
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 2.2e-59 233.0 217 52.5
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 6.4e-59 231.5 210 52.9
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 1.1e-58 230.7 196 56.1
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 1.9e-58 229.9 207 53.6
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 1.9e-58 229.9 214 53.3
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 3.2e-58 229.2 219 52.1
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 5.4e-58 228.4 205 56.1
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 7.0e-58 228.0 220 50.9
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 9.2e-58 227.6 219 50.7
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.2e-57 227.3 205 53.7
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 1.6e-57 226.9 221 51.1
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 3.5e-57 225.7 214 53.3
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 3.9e-56 222.2 188 55.3
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 8.6e-56 221.1 210 51.0
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 3.6e-54 215.7 211 50.2
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 6.2e-54 214.9 196 52.0
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 2.3e-53 213.0 212 50.0
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 3.1e-53 212.6 189 55.6
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 4.0e-53 212.2 210 48.6
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 5.2e-53 211.8 210 48.6
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 1.5e-52 210.3 215 48.4
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 7.5e-52 208.0 198 50.0
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 3.7e-51 205.7 212 49.1
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 1.4e-50 203.8 200 49.0
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 2.4e-50 203.0 214 48.1
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 4.1e-50 202.2 198 48.5
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 4.6e-49 198.7 216 47.7
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 6.0e-49 198.4 218 46.3
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 1.5e-47 193.7 175 57.1
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 1.5e-47 193.7 213 46.0
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 4.3e-47 192.2 110 83.6
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 4.3e-47 192.2 204 47.5
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 7.3e-47 191.4 118 79.7
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 9.5e-47 191.0 198 45.5
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 9.5e-47 191.0 219 43.8
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 8.9e-45 184.5 200 46.5
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 3.8e-43 179.1 173 53.8
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 3.8e-43 179.1 171 50.3
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 6.6e-40 168.3 138 63.0
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 6.6e-40 168.3 217 45.2
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 5.6e-39 165.2 219 39.7
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 2.0e-36 156.8 94 79.8
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 9.9e-36 154.5 210 40.5
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 1.7e-35 153.7 135 54.1
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 3.8e-35 152.5 127 55.9
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 4.9e-35 152.1 123 65.0
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 1.4e-34 150.6 123 64.2
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 3.5e-33 146.0 213 41.8
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 6.0e-33 145.2 212 36.3
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 1.3e-32 144.1 102 64.7
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 8.7e-32 141.4 211 37.4
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.5e-31 139.8 133 51.9
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 3.3e-31 139.4 134 49.3
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 2.8e-30 136.3 114 63.2
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 1.8e-29 133.7 175 44.6
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.6e-28 129.8 97 64.9
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 2.9e-27 126.3 130 47.7
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 8.4e-27 124.8 156 46.8
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.9e-26 123.6 168 41.7
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 1.2e-25 120.9 117 53.0
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 3.5e-25 119.4 98 57.1
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 6.7e-24 115.2 88 64.8
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 3.3e-23 112.8 98 61.2
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 9.6e-23 111.3 215 32.6
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 1.4e-21 107.5 149 38.3
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 2.0e-20 103.6 63 81.0
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 2.9e-19 99.8 90 60.0
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.1e-18 97.8 103 46.6
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 5.5e-18 95.5 92 45.7
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 3.5e-17 92.8 87 51.7
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 1.0e-16 91.3 117 47.9
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.3e-16 90.9 88 52.3
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.2e-11 73.6 64 56.2
C03p90670 Brassica napus HOM05D000138 ORTHO05D032089 7.1e-10 68.6 59 62.7
BolC3t21388H Brassica oleracea HOM05D000901 ORTHO05D032089 2.5e-07 60.1 46 69.6
BcaC07g42528 Brassica carinata HOM05D037012 ORTHO05D039422 4.8e-06 55.8 46 65.2


User provided reference genes

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