Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s2287 Capsella rubella HOM05D006215 ORTHO05D007719 7.7e-119 430.6 239 100.0
AL2G36000 Arabidopsis lyrata HOM05D006215 ORTHO05D007719 2.7e-100 369.0 227 90.3
Thhalv10019087m.g Eutrema salsugineum HOM05D006215 ORTHO05D007719 4.4e-98 361.7 229 89.5
BcaB02g07052 Brassica carinata HOM05D006215 ORTHO05D007719 2.8e-97 359.0 228 81.1
AT1G75980 Arabidopsis thaliana HOM05D006215 ORTHO05D007719 3.7e-97 358.6 227 89.0
A07p28630 Brassica napus HOM05D006215 ORTHO05D007719 1.8e-96 356.3 229 82.5
BraA07t30504Z Brassica rapa HOM05D006215 ORTHO05D007719 1.8e-96 356.3 229 82.5
A07p41490 Brassica napus HOM05D006215 ORTHO05D007719 5.3e-96 354.8 244 78.7
CARHR069510 Cardamine hirsuta HOM05D006215 ORTHO05D007719 1.0e-94 350.5 227 80.6
C06p49900 Brassica napus HOM05D006215 ORTHO05D007719 1.3e-94 350.1 239 80.3
BraA07t31681Z Brassica rapa HOM05D006215 ORTHO05D007719 2.9e-94 349.0 227 81.1
BcaB05g24966 Brassica carinata HOM05D006215 ORTHO05D007719 5.0e-94 348.2 223 80.3
Sp5g31100 Schrenkiella parvula HOM05D006215 ORTHO05D007719 1.9e-93 346.3 230 86.5
BcaC08g45544 Brassica carinata HOM05D006215 ORTHO05D007719 9.4e-93 344.0 223 81.6
C06p32240 Brassica napus HOM05D006215 ORTHO05D007719 1.2e-92 343.6 223 81.6
BolC6t38347H Brassica oleracea HOM05D006215 ORTHO05D007719 1.2e-92 343.6 223 81.6
BcaC08g47309 Brassica carinata HOM05D006215 ORTHO05D007719 1.0e-91 340.5 222 84.2
Medtr3g114470 Medicago truncatula HOM05D006215 ORTHO05D007719 1.6e-71 273.5 177 74.6
Potri.002G018100 Populus trichocarpa HOM05D006215 ORTHO05D007719 2.7e-71 272.7 175 77.1
Ca_15473_v3 Cicer arietinum L. HOM05D006215 ORTHO05D007719 1.7e-70 270.0 175 74.9
DCAR_009503 Daucus carota HOM05D006215 ORTHO05D007719 1.7e-70 270.0 170 77.1
PGSC0003DMG400009949 Solanum tuberosum HOM05D006215 ORTHO05D007719 3.0e-70 269.2 176 73.9
arahy.Tifrunner.gnm1.ann1.89BLSN Arachis hypogaea HOM05D006215 ORTHO05D007719 3.9e-70 268.9 175 73.7
Atru.chr13.240 Acer truncatum HOM05D006215 ORTHO05D007719 5.0e-70 268.5 175 74.9
Sopen04g035480 Solanum pennellii HOM05D006215 ORTHO05D007719 5.0e-70 268.5 176 73.9
Psat5g012560 Pisum sativum HOM05D006215 ORTHO05D007719 6.6e-70 268.1 177 72.9
Lj1g0006385 Lotus japonicus HOM05D006215 ORTHO05D007719 8.6e-70 267.7 172 74.4
Manes.18G010300 Manihot esculenta HOM05D006215 ORTHO05D007719 8.6e-70 267.7 173 75.1
THA.LOC104811433 Tarenaya hassleriana HOM05D006215 ORTHO05D007719 8.6e-70 267.7 202 68.3
Prupe.4G165400 Prunus persica HOM05D006215 ORTHO05D007719 1.5e-69 266.9 174 74.1
Ciclev10002478m.g Citrus clementina HOM05D006215 ORTHO05D007719 1.9e-69 266.5 174 76.4
Phvul.009G018900 Phaseolus vulgaris HOM05D006215 ORTHO05D007719 1.9e-69 266.5 175 72.0
Solyc04g081850.4 Solanum lycopersicum HOM05D006215 ORTHO05D007719 1.9e-69 266.5 176 73.3
Glyma.06G021900 Glycine max HOM05D006215 ORTHO05D007719 5.6e-69 265.0 175 72.6
Thecc.08G049400 Theobroma cacao HOM05D006215 ORTHO05D007719 5.6e-69 265.0 174 73.0
VMungo1215G3215 Vigna mungo HOM05D006215 ORTHO05D007719 5.6e-69 265.0 175 72.0
Cpa.g.sc26.282 Carica papaya HOM05D006215 ORTHO05D007719 1.6e-68 263.5 173 74.0
Gohir.D01G096200 Gossypium hirsutum HOM05D006215 ORTHO05D007719 2.1e-68 263.1 170 75.9
vmacro21863 Vaccinium macrocarpon HOM05D006215 ORTHO05D007719 2.1e-68 263.1 174 73.0
Lalb_Chr23g0266051 Lupinus albus HOM05D006215 ORTHO05D007719 3.6e-68 262.3 175 73.7
Duzib041G0142 Durio zibethinus HOM05D006215 ORTHO05D007719 4.7e-68 261.9 169 75.7
Lj4C18G8 Lonicera japonica HOM05D000114 ORTHO05D009837 4.7e-68 261.9 174 71.3
Rhsim06G0017400 Rhododendron simsii HOM05D006215 ORTHO05D007719 8.0e-68 261.2 176 71.6
Lsat_1_v5_gn_8_29640 Lactuca sativa HOM05D006215 ORTHO05D007719 1.1e-67 260.8 173 72.8
Glyma.04G021700 Glycine max HOM05D006215 ORTHO05D007719 1.8e-67 260.0 175 70.9
Gorai.002G121700 Gossypium raimondii HOM05D006215 ORTHO05D007719 1.8e-67 260.0 170 74.7
MD03G1242500 Malus domestica HOM05D006215 ORTHO05D007719 1.8e-67 260.0 175 72.6
Gohir.A01G109400 Gossypium hirsutum HOM05D006215 ORTHO05D007719 2.3e-67 259.6 170 75.3
Cfa013993 Carpinus fangiana HOM05D006215 ORTHO05D007719 3.1e-67 259.2 173 74.0
QL02p012562 Quercus lobata HOM05D006215 ORTHO05D007719 3.1e-67 259.2 172 73.8
Sed0008956 Sechium edule HOM05D006215 ORTHO05D007719 6.8e-67 258.1 174 70.1
TWI12G0400 Tripterygium wilfordii HOM05D006215 ORTHO05D007719 6.8e-67 258.1 170 75.3
CSS0039588 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 1.2e-66 257.3 173 72.3
COL.COLO4_26102 Corchorus olitorius HOM05D006215 ORTHO05D007719 1.5e-66 256.9 224 60.3
GSVIVG01009974001 Vitis vinifera HOM05D006215 ORTHO05D009429 2.0e-66 256.5 173 72.3
CSS0005676 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 3.4e-66 255.8 173 71.7
SGA_v2.0_scaffold292G47375 Striga asiatica HOM05D006215 ORTHO05D007719 3.4e-66 255.8 172 70.3
MSTRG.1158 Avicennia marina HOM05D006215 ORTHO05D007719 5.8e-66 255.0 170 71.8
Nn5g30812 Nelumbo nucifera HOM05D006215 ORTHO05D007719 9.8e-66 254.2 175 69.1
FAN11G1504 Fragaria x ananassa HOM05D006215 ORTHO05D007719 1.3e-65 253.8 174 71.3
CsaV3_3G046060 Cucumis sativus L. HOM05D006215 ORTHO05D007719 1.7e-65 253.4 175 70.9
HanXRQChr13g0386921 Helianthus annuus HOM05D006215 ORTHO05D007719 1.7e-65 253.4 170 72.9
Sabra02G0014400 Salix brachista HOM05D006215 ORTHO05D007719 1.7e-65 253.4 248 57.7
FAN25G2739 Fragaria x ananassa HOM05D006215 ORTHO05D007719 2.9e-65 252.7 174 70.7
RcHm_v2.0_Chr5g0031011 Rosa chinensis HOM05D006215 ORTHO05D007719 2.9e-65 252.7 174 71.3
Migut.C00887 Erythranthe guttata HOM05D006215 ORTHO05D007719 3.7e-65 252.3 169 70.4
CANSAT25G1322 Cannabis sativa HOM05D006215 ORTHO05D007719 1.1e-64 250.8 174 70.7
Dinv31883 Davidia involucrata HOM05D006215 ORTHO05D007719 1.1e-64 250.8 185 68.1
CAN.G311.58 Capsicum annuum HOM05D006215 ORTHO05D007719 3.2e-64 249.2 177 70.1
CANSAT80G2378 Cannabis sativa HOM05D006215 ORTHO05D007719 2.0e-63 246.5 179 66.5
EL10Ac1g02129 Beta vulgaris HOM05D006215 ORTHO05D007719 2.3e-62 243.0 175 64.6
ECA233G5922 Erigeron canadensis HOM05D000114 ORTHO05D000075 5.0e-62 241.9 173 67.6
Aqoxy5G01831 Aquilegia oxysepala HOM05D006215 ORTHO05D007719 7.3e-61 238.0 174 65.5
Hund01696 Selenicereus undatus HOM05D006215 ORTHO05D007719 1.2e-60 237.3 176 63.6
HPP92_025438 Vanilla planifolia HOM05D006215 ORTHO05D007719 2.8e-60 236.1 170 64.1
AUR62013912 Chenopodium quinoa HOM05D006215 ORTHO05D007719 8.1e-60 234.6 172 64.5
Oeu033622.1 Olea europaea HOM05D006215 ORTHO05D007719 8.1e-60 234.6 174 63.2
MELO3C003734.2 Cucumis melo HOM05D006215 ORTHO05D007719 1.1e-59 234.2 162 71.6
SalBow7G2905 Salvia bowleyana HOM05D006215 ORTHO05D007719 2.3e-59 233.0 189 61.9
unitig_32.g11202 Utricularia gibba HOM05D006215 ORTHO05D007719 4.0e-59 232.3 170 65.9
Zm00001eb209250 Zea mays HOM05D006215 ORTHO05D007719 1.5e-58 230.3 174 60.3
PSO339G6481 Papaver somniferum HOM05D006215 ORTHO05D007719 2.0e-58 229.9 172 67.4
PSO384G0480 Papaver somniferum HOM05D006215 ORTHO05D007719 8.3e-57 224.6 172 66.3
Rhsim06G0015300 Rhododendron simsii HOM05D006215 ORTHO05D007719 1.6e-55 220.3 176 64.2
CDE04G3084 Ceratophyllum demersum HOM05D006215 ORTHO05D007719 2.1e-55 219.9 152 70.4
ClCG05G015490 Citrullus lanatus HOM05D006215 ORTHO05D007719 4.6e-55 218.8 174 66.1
Nitab4.5_0004361g0040 Nicotiana tabacum HOM05D006215 ORTHO05D007719 6.6e-54 214.9 138 75.4
TPR.G38171 Trifolium pratense HOM05D006215 ORTHO05D007719 3.3e-53 212.6 133 78.2
CiPaw.07G144900 Carya illinoinensis HOM05D006215 ORTHO05D007719 1.6e-52 210.3 141 72.3
Eucgr.F03725 Eucalyptus grandis HOM05D006215 ORTHO05D007719 5.2e-51 205.3 144 68.8
Aa31LG4G6130 Aethionema arabicum HOM05D006215 ORTHO05D007719 1.5e-50 203.8 176 63.1
Os02g0120400 Oryza sativa ssp. japonica HOM05D006215 ORTHO05D007719 4.4e-50 202.2 133 68.4
FvH4_3g18360 Fragaria vesca HOM05D006215 ORTHO05D007719 9.9e-50 201.1 142 68.3
PGR083G2507 Punica granatum HOM05D006215 ORTHO05D007719 1.7e-49 200.3 180 61.1
Peaxi162Scf00860g00212 Petunia axillaris HOM05D006215 ORTHO05D007719 1.4e-48 197.2 173 61.8
Actinidia15453 Actinidia chinensis HOM05D006215 ORTHO05D007719 2.7e-47 193.0 174 57.5
ATR1088G027 Amborella trichopoda HOM05D006215 ORTHO05D007719 1.1e-45 187.6 143 68.5
AUR62018279 Chenopodium quinoa HOM05D006215 ORTHO05D007719 2.5e-45 186.4 171 54.4
Pp3c20_3890 Physcomitrium patens HOM05D006215 ORTHO05D007719 2.1e-44 183.3 163 52.1
TAR625G0502 Trochodendron aralioides HOM05D006215 ORTHO05D007719 3.6e-44 182.6 145 62.1
Mapoly0001s0313 Marchantia polymorpha HOM05D006215 ORTHO05D007719 1.8e-43 180.3 163 50.9
arahy.Tifrunner.gnm1.ann1.SEC0EX Arachis hypogaea HOM05D006215 ORTHO05D007719 5.2e-43 178.7 193 52.8
BolC6t40028H Brassica oleracea HOM05D006215 ORTHO05D007719 1.2e-42 177.6 126 73.0
Duzib093G1443 Durio zibethinus HOM05D006215 ORTHO05D007719 1.2e-42 177.6 124 71.8
SMO367G0408 Selaginella moellendorffii HOM05D006215 ORTHO05D007719 2.9e-41 172.9 162 50.0
Actinidia17011 Actinidia chinensis HOM05D006215 ORTHO05D007719 2.7e-39 166.4 161 55.3
FAN21G0515 Fragaria x ananassa HOM05D006215 ORTHO05D007719 6.9e-35 151.8 174 48.3
Sc15g0004750 Simmondsia chinensis HOM05D006215 ORTHO05D007719 2.2e-33 146.7 124 57.3
Cc10_g01280 Coffea canephora HOM05D006215 ORTHO05D007719 6.0e-31 138.7 90 67.8
Carub.0005s0222 Capsella rubella HOM05D006215 ORTHO05D007719 7.9e-31 138.3 71 100.0
Haze_22683 Corylus avellana HOM05D006215 ORTHO05D007719 3.3e-29 132.9 100 65.0
CANSAT25G3730 Cannabis sativa HOM05D006215 ORTHO05D007719 9.6e-29 131.3 95 64.2
SHI08014 Sapria himalayana HOM05D006215 ORTHO05D007719 6.2e-28 128.6 90 66.7
Eucgr.F03727 Eucalyptus grandis HOM05D006215 ORTHO05D007719 1.8e-27 127.1 85 75.3
Ah.06g187190 Amaranthus hybridus HOM05D006215 ORTHO05D007719 4.0e-27 125.9 110 59.1
CBR_g54848 Chara braunii HOM05D006215 ORTHO05D007719 7.6e-26 121.7 126 51.6
Cc10_g01290 Coffea canephora HOM05D006215 ORTHO05D007719 9.3e-24 114.8 87 65.5
BcaC03g15638 Brassica carinata HOM05D006215 ORTHO05D007719 4.6e-23 112.5 127 53.5
SEGI_18034 Sequoiadendron giganteum HOM05D006215 ORTHO05D007719 2.5e-21 106.7 79 60.8
AagrBONN_evm.TU.Sc2ySwM_117.1002 Anthoceros agrestis HOM05D006215 ORTHO05D007719 4.3e-21 105.9 103 52.4
Glyma.02G160800 Glycine max HOM05D006215 ORTHO05D007719 3.7e-20 102.8 59 78.0
C02p33520 Brassica napus HOM05D006215 ORTHO05D007719 4.5e-18 95.9 69 76.8
Medtr6g083100 Medicago truncatula HOM05D006215 ORTHO05D007719 1.3e-17 94.4 117 48.7
BolC2t09353H Brassica oleracea HOM05D006215 ORTHO05D007719 9.3e-16 88.2 69 71.0
A02p20380 Brassica napus HOM05D006215 ORTHO05D007719 4.3e-13 79.3 58 70.7
Lsat_1_v5_gn_4_111221 Lactuca sativa HOM05D006215 ORTHO05D007719 1.1e-11 74.7 49 73.5
TPR.G38152 Trifolium pratense HOM05D006215 ORTHO05D007719 8.5e-09 65.1 51 58.8
MCO13G478 Micromonas commoda HOM05D006215 ORTHO05D007719 1.1e-08 64.7 111 33.3
MD11G1262900 Malus domestica HOM05D006215 ORTHO05D007719 1.0e-06 58.2 35 82.9


User provided reference genes

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