Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s2258 Capsella rubella HOM05D010473 ORTHO05D007577 2.5e-307 1058.1 598 100.0
AL2G35720 Arabidopsis lyrata HOM05D010473 ORTHO05D007577 1.9e-214 749.6 617 76.7
AT1G75730 Arabidopsis thaliana HOM05D010473 ORTHO05D007577 5.6e-211 738.0 618 73.6
Sp5g30850 Schrenkiella parvula HOM05D010473 ORTHO05D007577 1.1e-198 697.2 622 68.8
Thhalv10018322m.g Eutrema salsugineum HOM05D010473 ORTHO05D007577 1.6e-194 683.3 623 68.5
CARHR069140 Cardamine hirsuta HOM05D010473 ORTHO05D007577 5.9e-184 648.3 614 70.4
A02p20200 Brassica napus HOM05D010473 ORTHO05D007577 6.3e-154 548.5 575 65.0
C02p33740 Brassica napus HOM05D010473 ORTHO05D007577 5.3e-153 545.4 634 60.9
BcaC03g15618 Brassica carinata HOM05D010473 ORTHO05D007577 2.9e-151 539.7 641 60.4
BolC2t09331H Brassica oleracea HOM05D010473 ORTHO05D007577 8.3e-146 521.5 583 61.7
BraA02t07054Z Brassica rapa HOM05D010473 ORTHO05D007577 1.7e-143 513.8 583 61.7
BraA07t31661Z Brassica rapa HOM05D010473 ORTHO05D007577 1.9e-142 510.4 615 59.5
A07p41260 Brassica napus HOM05D010473 ORTHO05D007577 3.2e-142 509.6 590 62.0
BcaB05g24937 Brassica carinata HOM05D010473 ORTHO05D007577 1.2e-136 491.1 627 54.7
C06p49680 Brassica napus HOM05D010473 ORTHO05D007577 5.4e-129 465.7 555 57.5
BolC6t40007H Brassica oleracea HOM05D010473 ORTHO05D007577 8.3e-122 441.8 578 54.5
Aa31LG4G5960 Aethionema arabicum HOM05D010473 ORTHO05D007577 2.6e-99 367.1 676 45.6
BcaC03g15614 Brassica carinata HOM05D010473 ORTHO05D007577 2.2e-98 364.0 511 54.2
THA.LOC104814031 Tarenaya hassleriana HOM05D010473 ORTHO05D007577 1.0e-66 258.8 605 41.7
BcaC08g47058 Brassica carinata HOM05D010473 ORTHO05D007577 1.3e-45 188.7 271 54.6
BcaC08g47047 Brassica carinata HOM05D010473 ORTHO05D007577 6.1e-32 143.3 133 74.4
Thecc.08G043900 Theobroma cacao HOM05D007378 ORTHO05D007577 6.8e-31 139.8 687 29.0
Ciclev10000382m.g Citrus clementina HOM05D007378 ORTHO05D007577 1.2e-24 119.0 770 27.8
QL02p011519 Quercus lobata HOM05D007378 ORTHO05D007577 2.8e-24 117.9 683 28.1
Prupe.1G365800 Prunus persica HOM05D007378 ORTHO05D007577 6.1e-24 116.7 736 29.9
Potri.005G238800 Populus trichocarpa HOM05D007378 ORTHO05D007577 6.8e-23 113.2 668 28.7
Duzib093G0923 Durio zibethinus HOM05D007378 ORTHO05D007577 1.2e-22 112.5 690 28.3
Duzib116G0067 Durio zibethinus HOM05D007378 ORTHO05D007577 1.5e-22 112.1 585 28.2
Manes.05G147800 Manihot esculenta HOM05D007378 ORTHO05D007577 3.7e-21 107.5 678 27.3
CiPaw.07G150400 Carya illinoinensis HOM05D007378 ORTHO05D007577 2.0e-19 101.7 581 29.4
Manes.18G013740 Manihot esculenta HOM05D007378 ORTHO05D007577 3.5e-19 100.9 573 29.0
Potri.002G022800 Populus trichocarpa HOM05D007378 ORTHO05D007577 3.5e-19 100.9 674 28.2
CAN.G311.27 Capsicum annuum HOM05D007378 ORTHO05D007577 5.9e-19 100.1 513 29.2
PGSC0003DMG400009935 Solanum tuberosum HOM05D007378 ORTHO05D007577 1.3e-18 99.0 544 29.6
Solyc04g081420.4 Solanum lycopersicum HOM05D007378 ORTHO05D007577 2.9e-18 97.8 555 28.8
COL.COLO4_26152 Corchorus olitorius HOM05D007378 ORTHO05D007577 5.0e-18 97.1 696 27.4
DCAR_013867 Daucus carota HOM05D007378 ORTHO05D007577 8.6e-18 96.3 603 29.4
MD15G1012700 Malus domestica HOM05D007378 ORTHO05D007577 8.6e-18 96.3 776 25.9
Sopen04g035030 Solanum pennellii HOM05D007378 ORTHO05D007577 1.5e-17 95.5 550 29.5
MD08G1013300 Malus domestica HOM05D007378 ORTHO05D007577 1.6e-16 92.0 702 26.9
Cfa013945 Carpinus fangiana HOM05D007378 ORTHO05D007577 4.7e-16 90.5 639 26.8
Peaxi162Scf00438g00718 Petunia axillaris HOM05D007378 ORTHO05D007577 8.0e-16 89.7 313 30.7
Sabra05G0184500 Salix brachista HOM05D007378 ORTHO05D007577 1.0e-15 89.4 672 25.9
Actinidia16984 Actinidia chinensis HOM05D007378 ORTHO05D007577 2.3e-15 88.2 620 27.3
Haze_22630 Corylus avellana HOM05D007378 ORTHO05D007577 2.3e-15 88.2 707 26.6
Dinv31841 Davidia involucrata HOM05D007378 ORTHO05D007577 8.9e-15 86.3 700 26.0
Migut.C00828 Erythranthe guttata HOM05D007378 ORTHO05D007577 8.9e-15 86.3 370 28.9
Ca_15483_v3 Cicer arietinum L. HOM05D007378 ORTHO05D007577 1.2e-14 85.9 603 26.7
Hma1.2p1_0023F.1_g015450 Hydrangea macrophylla HOM05D007378 ORTHO05D007577 1.2e-14 85.9 664 24.4
RcHm_v2.0_Chr6g0302801 Rosa chinensis HOM05D007378 ORTHO05D007577 3.4e-14 84.3 613 26.3
Sabra02G0018600 Salix brachista HOM05D007378 ORTHO05D007577 9.8e-14 82.8 671 26.7
GSVIVG01009901001 Vitis vinifera HOM05D007378 ORTHO05D007577 6.4e-13 80.1 558 27.1
Lj5g0002996 Lotus japonicus HOM05D007378 ORTHO05D007577 8.3e-13 79.7 316 30.4
Nitab4.5_0002561g0040 Nicotiana tabacum HOM05D007378 ORTHO05D007577 8.3e-13 79.7 504 26.4
Lalb_Chr11g0061931 Lupinus albus HOM05D007378 ORTHO05D007577 1.1e-12 79.3 323 32.5
Phvul.009G016700 Phaseolus vulgaris HOM05D007378 ORTHO05D007577 1.1e-12 79.3 345 30.7
Cpa.g.sc26.38 Carica papaya HOM05D007378 ORTHO05D007577 4.1e-12 77.4 666 27.2
CSS0021578 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 5.4e-12 77.0 784 24.9
Atru.chr13.296 Acer truncatum HOM05D007378 ORTHO05D007577 9.2e-12 76.3 399 29.8
Actinidia15419 Actinidia chinensis HOM05D007378 ORTHO05D007577 1.2e-11 75.9 533 27.4
CANSAT25G3202 Cannabis sativa HOM05D007378 ORTHO05D007577 1.2e-11 75.9 679 26.5
Glyma.14G219000 Glycine max HOM05D007378 ORTHO05D007577 1.6e-11 75.5 545 27.0
TPR.G34540 Trifolium pratense HOM05D007378 ORTHO05D007577 2.7e-11 74.7 444 25.9
Duzib041G0283 Durio zibethinus HOM05D007378 ORTHO05D007577 3.5e-11 74.3 307 30.3
TWI36G1616 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 3.5e-11 74.3 563 24.7
Glyma.06G024600 Glycine max HOM05D007378 ORTHO05D007577 7.8e-11 73.2 527 26.8
Eucgr.F00598 Eucalyptus grandis HOM05D007378 ORTHO05D007577 2.3e-10 71.6 725 26.6
FAN20G0665 Fragaria x ananassa HOM05D007378 ORTHO05D007577 3.0e-10 71.2 562 26.9
CSS0010969 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 6.6e-10 70.1 391 27.6
MSTRG.25246 Avicennia marina HOM05D007378 ORTHO05D007577 8.6e-10 69.7 521 26.3
Glyma.17G258000 Glycine max HOM05D007378 ORTHO05D007577 1.1e-09 69.3 546 25.1
Hund05208 Selenicereus undatus HOM05D007378 ORTHO05D007577 1.1e-09 69.3 570 27.4
arahy.Tifrunner.gnm1.ann1.WP2VUZ Arachis hypogaea HOM05D007378 ORTHO05D007577 1.5e-09 68.9 406 26.6
FvH4_2g38520 Fragaria vesca HOM05D007378 ORTHO05D007577 2.5e-09 68.2 570 27.4
arahy.Tifrunner.gnm1.ann1.KUKA7T Arachis hypogaea HOM05D007378 ORTHO05D007577 4.3e-09 67.4 216 33.3
Duzib041G0240 Durio zibethinus HOM05D007378 ORTHO05D007577 4.3e-09 67.4 207 34.3
Glyma.04G024500 Glycine max HOM05D007378 ORTHO05D007577 7.3e-09 66.6 532 26.1
TWI12G0183 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 9.5e-09 66.2 193 36.8
CiPaw.08G066200 Carya illinoinensis HOM05D007378 ORTHO05D007577 1.2e-08 65.9 197 38.6
Medtr3g113840 Medicago truncatula HOM05D007378 ORTHO05D007577 1.6e-08 65.5 624 24.5
FAN15G3724 Fragaria x ananassa HOM05D007378 ORTHO05D007577 6.2e-08 63.5 540 26.1
PGR031G0679 Punica granatum HOM05D007378 ORTHO05D007577 1.4e-07 62.4 114 47.4
Sc15g0005020 Simmondsia chinensis HOM05D007378 ORTHO05D007577 1.4e-07 62.4 440 27.5
Lj1g0027004 Lotus japonicus HOM05D007378 ORTHO05D007577 2.3e-07 61.6 551 24.3
VMungo1309G2950 Vigna mungo HOM05D007378 ORTHO05D007577 4.0e-07 60.8 546 26.4
Cc10_g01700 Coffea canephora HOM05D007378 ORTHO05D007577 5.2e-07 60.5 680 23.5
Nn5g30152 Nelumbo nucifera HOM05D007378 ORTHO05D007577 6.8e-07 60.1 462 26.4
Ca_13427_v3 Cicer arietinum L. HOM05D007378 ORTHO05D007577 1.2e-06 59.3 541 25.7
TPR.G26373 Trifolium pratense HOM05D007378 ORTHO05D007577 2.0e-06 58.5 532 23.1
CSS0024961 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 3.4e-06 57.8 207 33.8
TAR625G0788 Trochodendron aralioides HOM05D000628 ORTHO05D001121 3.4e-06 57.8 153 37.3
TWI56G0017 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 4.4e-06 57.4 260 33.1
VMungo0647G1459 Vigna mungo HOM05D007378 ORTHO05D007577 4.4e-06 57.4 437 25.4
Medtr1g025180 Medicago truncatula HOM05D007378 ORTHO05D007577 5.8e-06 57.0 558 24.0
Phvul.001G006800 Phaseolus vulgaris HOM05D007378 ORTHO05D007577 7.5e-06 56.6 440 27.5


User provided reference genes

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