Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 3.7e-63 245.7 256 100.0
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 3.2e-54 216.1 256 93.0
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 1.3e-47 194.1 237 91.6
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 7.3e-43 178.3 273 85.7
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 1.3e-42 177.6 275 85.1
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 3.1e-41 172.9 273 82.8
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 5.8e-40 168.7 268 85.1
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 9.9e-40 167.9 270 83.7
CARHR068960 Cardamine hirsuta HOM05D004463 ORTHO05D004724 9.6e-35 151.4 215 89.3
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 9.0e-33 144.8 239 82.0
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 3.1e-25 119.8 237 76.4
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 1.8e-17 94.0 240 71.7
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 5.3e-17 92.4 239 74.5
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 3.4e-16 89.7 238 71.0
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 3.4e-16 89.7 244 68.4
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 4.5e-16 89.4 251 67.7
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 5.9e-16 89.0 252 67.5
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 7.7e-16 88.6 231 72.7
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 2.2e-15 87.0 49 79.6
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 3.8e-15 86.3 258 68.6
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 2.5e-14 83.6 243 69.5
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 2.5e-14 83.6 49 79.6
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 4.2e-14 82.8 49 75.5
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 3.6e-13 79.7 242 70.7
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 3.6e-13 79.7 49 73.5
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 4.6e-13 79.3 49 73.5
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 6.1e-13 79.0 258 71.3
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 1.0e-12 78.2 49 71.4
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 1.0e-12 78.2 243 68.7
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 1.4e-12 77.8 49 73.5
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.4e-12 77.8 49 67.3
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 3.0e-12 76.6 49 69.4
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 3.9e-12 76.3 49 71.4
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 5.1e-12 75.9 49 69.4
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 5.1e-12 75.9 49 69.4
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 5.1e-12 75.9 49 69.4
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 5.1e-12 75.9 49 69.4
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 5.1e-12 75.9 49 69.4
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 6.7e-12 75.5 49 69.4
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 6.7e-12 75.5 49 67.3
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 8.8e-12 75.1 49 67.3
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 8.8e-12 75.1 49 67.3
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 8.8e-12 75.1 49 67.3
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.1e-11 74.7 49 67.3
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 1.1e-11 74.7 49 67.3
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.5e-11 74.3 49 67.3
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 1.5e-11 74.3 49 67.3
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 2.0e-11 73.9 49 65.3
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 2.0e-11 73.9 49 65.3
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 2.0e-11 73.9 49 67.3
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 2.0e-11 73.9 49 65.3
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 2.0e-11 73.9 49 65.3
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 2.0e-11 73.9 235 68.5
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 2.0e-11 73.9 49 67.3
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 2.0e-11 73.9 49 65.3
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 2.0e-11 73.9 49 65.3
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 2.0e-11 73.9 49 65.3
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 2.5e-11 73.6 49 67.3
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 3.3e-11 73.2 49 65.3
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 4.3e-11 72.8 49 63.3
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 4.3e-11 72.8 238 67.6
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 5.7e-11 72.4 49 65.3
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 5.7e-11 72.4 49 71.4
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 5.7e-11 72.4 49 65.3
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 5.7e-11 72.4 49 65.3
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 5.7e-11 72.4 49 65.3
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 5.7e-11 72.4 49 67.3
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 7.4e-11 72.0 49 63.3
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 7.4e-11 72.0 49 63.3
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 7.4e-11 72.0 49 65.3
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 9.7e-11 71.6 47 68.1
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 9.7e-11 71.6 51 68.6
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 1.3e-10 71.2 236 69.1
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 1.7e-10 70.9 48 66.7
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 1.7e-10 70.9 49 63.3
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 1.7e-10 70.9 51 64.7
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 1.7e-10 70.9 47 66.0
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.7e-10 70.9 49 67.3
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 2.2e-10 70.5 44 68.2
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 2.2e-10 70.5 47 66.0
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 2.8e-10 70.1 50 66.0
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.8e-10 70.1 47 66.0
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 3.7e-10 69.7 50 66.0
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 4.8e-10 69.3 50 66.0
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 4.8e-10 69.3 49 61.2
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 6.3e-10 68.9 49 61.2
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 6.3e-10 68.9 50 64.0
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 8.2e-10 68.6 255 62.4
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 1.1e-09 68.2 49 63.3
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 1.1e-09 68.2 52 63.5
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.1e-09 68.2 52 63.5
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.1e-09 68.2 52 63.5
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.1e-09 68.2 52 63.5
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.1e-09 68.2 52 63.5
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 1.1e-09 68.2 47 66.0
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 1.8e-09 67.4 244 66.8
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 3.1e-09 66.6 49 61.2
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 3.1e-09 66.6 49 61.2
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 3.1e-09 66.6 49 61.2
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 3.1e-09 66.6 49 61.2
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 3.1e-09 66.6 49 61.2
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 4.1e-09 66.2 49 59.2
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 5.3e-09 65.9 49 65.3
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 6.9e-09 65.5 49 63.3
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 9.1e-09 65.1 51 62.7
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 5.9e-08 62.4 50 66.0
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 7.7e-08 62.0 50 60.0
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 7.7e-08 62.0 46 63.0
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 1.7e-07 60.8 50 62.0
Cfa005098 Carpinus fangiana HOM05D065658 ORTHO05D004724 2.2e-07 60.5 35 68.6
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 2.2e-07 60.5 48 58.3
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 2.2e-07 60.5 48 58.3
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 2.9e-07 60.1 49 61.2
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 2.9e-07 60.1 50 64.0
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 3.8e-07 59.7 251 65.3
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 3.8e-07 59.7 57 50.9
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 5.0e-07 59.3 48 66.7
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 5.0e-07 59.3 48 66.7
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 8.5e-07 58.5 49 65.3
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 8.5e-07 58.5 58 55.2
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 2.5e-06 57.0 50 60.0
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 2.5e-06 57.0 49 61.2
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 2.5e-06 57.0 50 60.0
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 3.2e-06 56.6 50 60.0
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 3.2e-06 56.6 50 62.0
EL10Ac1g00556 Beta vulgaris HOM05D004463 ORTHO05D004724 4.2e-06 56.2 92 38.0
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 4.2e-06 56.2 50 62.0
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 4.2e-06 56.2 50 62.0
Os03g0820700 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 4.2e-06 56.2 30 76.7
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 5.5e-06 55.8 45 57.8
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 5.5e-06 55.8 50 58.0
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 7.2e-06 55.5 49 61.2
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 9.4e-06 55.1 50 58.0


User provided reference genes

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