Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s2166 Capsella rubella HOM05D002915 ORTHO05D003004 8.8e-116 420.2 204 100.0
Sp5g30010 Schrenkiella parvula HOM05D002915 ORTHO05D003004 5.8e-59 231.5 252 52.0
CARHR060200 Cardamine hirsuta HOM05D002915 ORTHO05D003004 2.2e-58 229.6 248 47.6
AT1G74875 Arabidopsis thaliana HOM05D002915 ORTHO05D003004 5.5e-57 224.9 219 55.7
Thhalv10019573m.g Eutrema salsugineum HOM05D002915 ORTHO05D003004 2.7e-56 222.6 254 48.4
BcaB03g15181 Brassica carinata HOM05D002915 ORTHO05D003004 1.2e-51 207.2 279 44.8
Carub.0002s1396 Capsella rubella HOM05D002915 ORTHO05D003004 2.0e-51 206.5 250 46.0
A07p34150 Brassica napus HOM05D002915 ORTHO05D003004 7.6e-51 204.5 284 43.3
BcaC08g46172 Brassica carinata HOM05D002915 ORTHO05D003004 2.2e-50 203.0 285 42.8
C06p42620 Brassica napus HOM05D002915 ORTHO05D003004 2.2e-50 203.0 285 42.8
BolC6t39177H Brassica oleracea HOM05D002915 ORTHO05D003004 2.2e-50 203.0 285 42.8
AL2G26290 Arabidopsis lyrata HOM05D002915 ORTHO05D003004 1.6e-48 196.8 241 46.9
BraA07t31040Z Brassica rapa HOM05D006725 ORTHO05D008223 3.5e-48 195.7 279 42.7
Thhalv10019642m.g Eutrema salsugineum HOM05D002915 ORTHO05D003004 1.9e-46 189.9 238 46.6
AT1G67623 Arabidopsis thaliana HOM05D002915 ORTHO05D003004 6.7e-39 164.9 235 42.1
THA.LOC104810144 Tarenaya hassleriana HOM05D002915 ORTHO05D003004 2.8e-29 132.9 249 32.9
SpUn0839_0010 Schrenkiella parvula HOM05D002915 ORTHO05D003004 6.5e-26 121.7 107 54.2
SpUn0282_0010 Schrenkiella parvula HOM05D006725 ORTHO05D008223 1.6e-24 117.1 130 46.2
FAN19G1392 Fragaria x ananassa HOM05D002915 ORTHO05D003004 3.5e-19 99.4 241 27.8
Thecc.09G039200 Theobroma cacao HOM05D002915 ORTHO05D003004 1.3e-18 97.4 220 29.5
CARHR060390 Cardamine hirsuta HOM05D002915 ORTHO05D003004 3.8e-18 95.9 127 37.0
FAN26G0404 Fragaria x ananassa HOM05D002915 ORTHO05D003004 5.5e-17 92.0 242 27.3
Gohir.A09G111900 Gossypium hirsutum HOM05D002915 ORTHO05D003004 2.1e-16 90.1 233 28.8
Hma1.2p1_0167F.1_g073810 Hydrangea macrophylla HOM05D002915 ORTHO05D003004 2.1e-16 90.1 227 28.2
TWI09G1418 Tripterygium wilfordii HOM05D002915 ORTHO05D003004 4.7e-16 89.0 225 28.0
Prupe.1G137300 Prunus persica HOM05D002915 ORTHO05D003004 6.1e-16 88.6 236 26.3
Haze_24934 Corylus avellana HOM05D002915 ORTHO05D003004 1.0e-15 87.8 237 26.6
Lj4g0001673 Lotus japonicus HOM05D002915 ORTHO05D003004 2.3e-15 86.7 236 25.8
CSS0045033 Camellia sinensis var. sinensis HOM05D002915 ORTHO05D003004 4.0e-15 85.9 220 26.4
Rhsim12G0105300 Rhododendron simsii HOM05D002915 ORTHO05D003004 4.0e-15 85.9 220 25.0
Thecc.06G218700 Theobroma cacao HOM05D002915 ORTHO05D003004 6.7e-15 85.1 233 26.2
MD16G1169500 Malus domestica HOM05D002915 ORTHO05D003004 1.2e-14 84.3 241 27.8
Cfa002665 Carpinus fangiana HOM05D002915 ORTHO05D003004 2.6e-14 83.2 244 27.0
CiPaw.05G115300 Carya illinoinensis HOM05D002915 ORTHO05D003004 2.6e-14 83.2 236 27.5
CiPaw.05G115400 Carya illinoinensis HOM05D002915 ORTHO05D003004 2.6e-14 83.2 236 27.5
Rhsim12G0105400 Rhododendron simsii HOM05D002915 ORTHO05D003004 2.6e-14 83.2 236 26.3
CARHR046130 Cardamine hirsuta HOM05D002915 ORTHO05D003004 3.3e-14 82.8 144 34.7
Gohir.D09G108400 Gossypium hirsutum HOM05D002915 ORTHO05D003004 3.3e-14 82.8 235 27.7
Rhsim13G0213700 Rhododendron simsii HOM05D002915 ORTHO05D003004 4.4e-14 82.4 245 24.5
MD16G1170100 Malus domestica HOM05D002915 ORTHO05D003004 5.7e-14 82.0 245 25.3
Gorai.006G126100 Gossypium raimondii HOM05D002915 ORTHO05D003004 7.5e-14 81.6 233 26.6
QL03p054762 Quercus lobata HOM05D002915 ORTHO05D003004 7.5e-14 81.6 150 33.3
CARHR104930 Cardamine hirsuta HOM05D002915 ORTHO05D003004 1.3e-13 80.9 127 36.2
Glyma.17G083900 Glycine max HOM05D002915 ORTHO05D003004 1.3e-13 80.9 210 28.6
Gohir.D09G108500 Gossypium hirsutum HOM05D002915 ORTHO05D003004 1.3e-13 80.9 233 27.9
Rhsim02G0221300 Rhododendron simsii HOM05D002915 ORTHO05D003004 1.3e-13 80.9 227 25.6
RcHm_v2.0_Chr4g0422141 Rosa chinensis HOM05D002915 ORTHO05D003004 1.3e-13 80.9 239 25.5
Sabra13G0007400 Salix brachista HOM05D002915 ORTHO05D003004 1.7e-13 80.5 216 27.3
Gorai.006G126200 Gossypium raimondii HOM05D002915 ORTHO05D003004 2.2e-13 80.1 233 27.5
Potri.013G008800 Populus trichocarpa HOM05D002915 ORTHO05D003004 6.3e-13 78.6 209 24.9
Lj2g0021070 Lotus japonicus HOM05D002915 ORTHO05D003004 8.2e-13 78.2 222 26.1
Manes.12G023850 Manihot esculenta HOM05D002915 ORTHO05D003004 8.2e-13 78.2 230 26.5
Manes.12G014800 Manihot esculenta HOM05D002915 ORTHO05D003004 1.1e-12 77.8 229 25.8
Duzib168G1329 Durio zibethinus HOM05D002915 ORTHO05D003004 1.4e-12 77.4 244 26.2
CiPaw.05G115500 Carya illinoinensis HOM05D002915 ORTHO05D003004 2.4e-12 76.6 235 26.0
Manes.13G015600 Manihot esculenta HOM05D002915 ORTHO05D003004 2.4e-12 76.6 229 24.5
Gohir.A05G169100 Gossypium hirsutum HOM05D002915 ORTHO05D003004 3.1e-12 76.3 224 26.8
BraA07t31044Z Brassica rapa HOM05D006725 ORTHO05D008223 5.3e-12 75.5 70 60.0
Duzib150G0710 Durio zibethinus HOM05D002915 ORTHO05D003004 5.3e-12 75.5 250 25.6
Lj6g0021938 Lotus japonicus HOM05D002915 ORTHO05D003004 7.0e-12 75.1 208 26.9
Sed0005801 Sechium edule HOM05D002915 ORTHO05D003004 7.0e-12 75.1 225 24.9
vmacro16134 Vaccinium macrocarpon HOM05D002915 ORTHO05D003004 1.2e-11 74.3 233 24.5
Psat0s1573g0120 Pisum sativum HOM05D002915 ORTHO05D003004 1.6e-11 73.9 245 27.3
Lj5g0020165 Lotus japonicus HOM05D002915 ORTHO05D003004 5.9e-11 72.0 237 28.3
Aqoxy1G00479 Aquilegia oxysepala HOM05D002915 ORTHO05D003004 7.7e-11 71.6 222 26.1
Dinv14798 Davidia involucrata HOM05D002915 ORTHO05D003004 7.7e-11 71.6 209 25.4
Lj4g0002182 Lotus japonicus HOM05D002915 ORTHO05D003004 1.0e-10 71.2 240 25.0
Duzib168G1942 Durio zibethinus HOM05D002915 ORTHO05D003004 1.3e-10 70.9 244 26.2
Gohir.D05G172300 Gossypium hirsutum HOM05D002915 ORTHO05D003004 1.7e-10 70.5 238 24.4
CSS0049349 Camellia sinensis var. sinensis HOM05D002915 ORTHO05D003004 2.9e-10 69.7 123 29.3
COL.COLO4_36468 Corchorus olitorius HOM05D002915 ORTHO05D003004 2.9e-10 69.7 232 27.2
Gorai.009G177500 Gossypium raimondii HOM05D002915 ORTHO05D003004 2.9e-10 69.7 238 24.4
FAN17G1773 Fragaria x ananassa HOM05D002915 ORTHO05D003004 6.5e-10 68.6 215 26.5
FAN23G0131 Fragaria x ananassa HOM05D002915 ORTHO05D003004 1.1e-09 67.8 195 24.6
TAR629G0058 Trochodendron aralioides HOM05D002915 ORTHO05D003004 1.1e-09 67.8 217 25.3
CARHR104440 Cardamine hirsuta HOM05D052427 ORTHO05D003004 1.5e-09 67.4 120 31.7
Lj4g0001937 Lotus japonicus HOM05D002915 ORTHO05D003004 1.9e-09 67.0 198 25.8
Duzib168G1902 Durio zibethinus HOM05D002915 ORTHO05D003004 2.5e-09 66.6 155 28.4
DCAR_018111 Daucus carota HOM05D002915 ORTHO05D003004 3.2e-09 66.2 154 26.6
Lj2g0014982 Lotus japonicus HOM05D002915 ORTHO05D003004 3.2e-09 66.2 230 26.1
CARHR218040 Cardamine hirsuta HOM05D052427 ORTHO05D003004 4.2e-09 65.9 105 30.5
Lj4g0005635 Lotus japonicus HOM05D002915 ORTHO05D003004 4.2e-09 65.9 198 25.8
Lsat_1_v5_gn_8_150181 Lactuca sativa HOM05D000825 ORTHO05D003684 5.5e-09 65.5 175 25.1
CiPaw.06G099700 Carya illinoinensis HOM05D002915 ORTHO05D003004 7.2e-09 65.1 225 25.3
Dinv28571 Davidia involucrata HOM05D002915 ORTHO05D003004 9.4e-09 64.7 136 30.1
Ciclev10033456m.g Citrus clementina HOM05D002915 ORTHO05D003004 1.6e-08 63.9 160 30.0
Migut.F00476 Erythranthe guttata HOM05D002915 ORTHO05D003004 1.6e-08 63.9 229 27.5
Lj1g0000366 Lotus japonicus HOM05D002915 ORTHO05D003004 1.6e-08 63.9 202 23.8
Lj4g0013622 Lotus japonicus HOM05D002915 ORTHO05D003004 1.6e-08 63.9 212 25.5
Lj5g0000576 Lotus japonicus HOM05D002915 ORTHO05D003004 1.6e-08 63.9 236 25.4
TPR.G23884 Trifolium pratense HOM05D002915 ORTHO05D003004 1.6e-08 63.9 228 27.2
FAN12G2317 Fragaria x ananassa HOM05D002915 ORTHO05D003004 2.1e-08 63.5 208 26.9
Lj4g0008862 Lotus japonicus HOM05D002915 ORTHO05D003004 2.1e-08 63.5 254 23.2
TAR629G0865 Trochodendron aralioides HOM05D002915 ORTHO05D003004 2.1e-08 63.5 227 23.3
Potri.001G321400 Populus trichocarpa HOM05D002915 ORTHO05D003004 2.7e-08 63.2 134 29.1
Atru.chr1.712 Acer truncatum HOM05D002915 ORTHO05D003004 3.6e-08 62.8 223 25.6
Migut.H01190 Erythranthe guttata HOM05D002915 ORTHO05D003004 3.6e-08 62.8 199 28.6
Migut.C00063 Erythranthe guttata HOM05D002915 ORTHO05D003004 4.7e-08 62.4 209 25.4
Nn1g09544 Nelumbo nucifera HOM05D002915 ORTHO05D003004 4.7e-08 62.4 224 25.9
Lj4g0025234 Lotus japonicus HOM05D002915 ORTHO05D003004 6.1e-08 62.0 239 23.8
Medtr4g112590 Medicago truncatula HOM05D002915 ORTHO05D003004 6.1e-08 62.0 181 29.3
Actinidia25760 Actinidia chinensis HOM05D002915 ORTHO05D003004 8.0e-08 61.6 218 23.9
Lj1g0003622 Lotus japonicus HOM05D002915 ORTHO05D003004 8.0e-08 61.6 227 24.7
Manes.11G084185 Manihot esculenta HOM05D002915 ORTHO05D003004 8.0e-08 61.6 151 27.2
Atru.chr1.711 Acer truncatum HOM05D002915 ORTHO05D003004 1.0e-07 61.2 215 25.1
DCAR_018110 Daucus carota HOM05D002915 ORTHO05D003004 1.0e-07 61.2 155 27.7
Lalb_Chr18g0050831 Lupinus albus HOM05D002915 ORTHO05D003004 1.0e-07 61.2 251 23.5
FAN28G1700 Fragaria x ananassa HOM05D002915 ORTHO05D003004 1.4e-07 60.8 169 26.0
FAN28G2009 Fragaria x ananassa HOM05D002915 ORTHO05D003004 1.4e-07 60.8 169 26.0
FAN28G2017 Fragaria x ananassa HOM05D002915 ORTHO05D003004 1.4e-07 60.8 169 26.0
Lj6g0013707 Lotus japonicus HOM05D002915 ORTHO05D003004 1.4e-07 60.8 218 22.9
CARHR154160 Cardamine hirsuta HOM05D002915 ORTHO05D003004 2.3e-07 60.1 161 25.5
Migut.C00066 Erythranthe guttata HOM05D002915 ORTHO05D003004 2.3e-07 60.1 151 28.5
Migut.H01084 Erythranthe guttata HOM05D002915 ORTHO05D003004 2.3e-07 60.1 151 30.5
PGR142G3351 Punica granatum HOM05D002915 ORTHO05D003004 2.3e-07 60.1 236 23.3
Atru.chr11.2288 Acer truncatum HOM05D002915 ORTHO05D003004 3.0e-07 59.7 220 21.8
DCAR_016182 Daucus carota HOM05D002915 ORTHO05D003004 3.0e-07 59.7 179 27.4
Lj3g0023229 Lotus japonicus HOM05D002915 ORTHO05D003004 3.0e-07 59.7 233 24.0
Lalb_Chr10g0105601 Lupinus albus HOM05D002915 ORTHO05D003004 3.0e-07 59.7 214 24.8
TPR.G19429 Trifolium pratense HOM05D002915 ORTHO05D003004 5.2e-07 58.9 248 23.0
Lj6A821T72 Lonicera japonica HOM05D002915 ORTHO05D003004 6.8e-07 58.5 223 23.8
Psat0s3757g0040 Pisum sativum HOM05D002915 ORTHO05D003004 6.8e-07 58.5 157 28.0
BcaC04g20434 Brassica carinata HOM05D008883 ORTHO05D011075 8.8e-07 58.2 166 28.3
Lj4g0014849 Lotus japonicus HOM05D002915 ORTHO05D003004 8.8e-07 58.2 239 21.8
Medtr3g075360 Medicago truncatula HOM05D002915 ORTHO05D003004 1.2e-06 57.8 242 24.8
Psat0s6185g0040 Pisum sativum HOM05D002915 ORTHO05D003004 1.2e-06 57.8 157 28.7
Gorai.007G046700 Gossypium raimondii HOM05D002915 ORTHO05D003004 2.0e-06 57.0 223 26.0
Lalb_Chr13g0303601 Lupinus albus HOM05D002915 ORTHO05D003004 2.0e-06 57.0 235 24.7
Thhalv10002269m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 2.6e-06 56.6 138 27.5
Gohir.D11G043350 Gossypium hirsutum HOM05D002915 ORTHO05D003004 2.6e-06 56.6 214 24.8
Medtr5g033770 Medicago truncatula HOM05D002915 ORTHO05D003004 2.6e-06 56.6 234 23.5
A09p69320 Brassica napus HOM05D008883 ORTHO05D011075 3.4e-06 56.2 166 27.7
BolC8t52922H Brassica oleracea HOM05D008883 ORTHO05D011075 3.4e-06 56.2 166 27.7
CAN.G1143.27 Capsicum annuum HOM05D002915 ORTHO05D003004 4.4e-06 55.8 156 25.6
Lj6g0019512 Lotus japonicus HOM05D002915 ORTHO05D003004 4.4e-06 55.8 219 21.0
ClCG11G013100 Citrullus lanatus HOM05D002915 ORTHO05D003004 5.7e-06 55.5 218 26.1
Atru.chr11.2244 Acer truncatum HOM05D002915 ORTHO05D003004 7.5e-06 55.1 218 24.3
Atru.chr11.2259 Acer truncatum HOM05D002915 ORTHO05D003004 7.5e-06 55.1 218 24.3
Ca_21504_v3 Cicer arietinum L. HOM05D002915 ORTHO05D003004 7.5e-06 55.1 244 24.2
Lj2g0026934 Lotus japonicus HOM05D002915 ORTHO05D003004 7.5e-06 55.1 216 23.1
PGSC0003DMG400043877 Solanum tuberosum HOM05D002915 ORTHO05D003004 7.5e-06 55.1 138 24.6
SGA_v2.0_scaffold51G18778 Striga asiatica HOM05D002915 ORTHO05D003004 7.5e-06 55.1 171 28.1
TPR.G3196 Trifolium pratense HOM05D002915 ORTHO05D003004 7.5e-06 55.1 156 26.3
TWI09G0909 Tripterygium wilfordii HOM05D002915 ORTHO05D003004 7.5e-06 55.1 42 52.4
TWI09G1379 Tripterygium wilfordii HOM05D002915 ORTHO05D003004 7.5e-06 55.1 42 52.4
PGSC0003DMG400021580 Solanum tuberosum HOM05D002915 ORTHO05D003004 9.8e-06 54.7 147 23.1
PGSC0003DMG400040843 Solanum tuberosum HOM05D002915 ORTHO05D003004 9.8e-06 54.7 90 33.3


User provided reference genes

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