Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s2143 Capsella rubella HOM05D006971 ORTHO05D009076 5.0e-210 734.2 371 100.0
AL2G34520 Arabidopsis lyrata HOM05D006971 ORTHO05D009076 6.2e-200 700.7 371 94.9
AT1G74640 Arabidopsis thaliana HOM05D006971 ORTHO05D009076 1.2e-198 696.4 371 94.9
BraA02t06985Z Brassica rapa HOM05D006971 ORTHO05D009076 3.5e-187 658.3 369 90.5
C02p31990 Brassica napus HOM05D006971 ORTHO05D009076 3.9e-186 654.8 368 90.8
Sp5g29760 Schrenkiella parvula HOM05D006971 ORTHO05D009076 5.1e-186 654.4 372 89.5
BcaC03g15516 Brassica carinata HOM05D006971 ORTHO05D009076 1.1e-185 653.3 368 90.5
A02p19460 Brassica napus HOM05D006971 ORTHO05D009076 1.5e-185 652.9 368 90.5
Aa31LG4G4870 Aethionema arabicum HOM05D006971 ORTHO05D009076 3.1e-183 645.2 367 86.9
BcaB05g24862 Brassica carinata HOM05D006971 ORTHO05D009076 1.2e-182 643.3 366 90.2
CARHR067910 Cardamine hirsuta HOM05D006971 ORTHO05D009076 7.3e-169 597.4 311 95.5
THA.LOC104808268 Tarenaya hassleriana HOM05D006971 ORTHO05D009076 1.1e-167 593.6 371 80.9
Ciclev10020174m.g Citrus clementina HOM05D006971 ORTHO05D009076 1.1e-148 530.4 373 72.1
CiPaw.11G044200 Carya illinoinensis HOM05D006971 ORTHO05D009076 2.7e-147 525.8 371 70.4
Manes.06G092900 Manihot esculenta HOM05D006971 ORTHO05D009076 2.3e-146 522.7 372 68.0
Cpa.g.sc111.5 Carica papaya HOM05D006971 ORTHO05D009076 3.9e-146 521.9 369 71.8
CANSAT80G1552 Cannabis sativa HOM05D006971 ORTHO05D009076 1.5e-145 520.0 369 69.4
QL10p016808 Quercus lobata HOM05D006971 ORTHO05D009076 9.7e-145 517.3 372 69.6
TWI15G1038 Tripterygium wilfordii HOM05D006971 ORTHO05D009076 4.8e-144 515.0 367 68.9
Dinv38707 Davidia involucrata HOM05D006971 ORTHO05D009076 1.1e-143 513.8 372 69.4
Prupe.5G193100 Prunus persica HOM05D006971 ORTHO05D009076 1.2e-142 510.4 369 69.1
Ca_21824_v3 Cicer arietinum L. HOM05D006971 ORTHO05D009076 1.5e-142 510.0 369 69.9
Lj4g0026607 Lotus japonicus HOM05D006971 ORTHO05D009076 4.5e-142 508.4 371 68.5
Psat4g051280 Pisum sativum HOM05D006971 ORTHO05D009076 5.9e-142 508.1 369 69.1
RcHm_v2.0_Chr7g0181351 Rosa chinensis HOM05D006971 ORTHO05D009076 1.0e-141 507.3 372 68.8
Phvul.003G190500 Phaseolus vulgaris HOM05D006971 ORTHO05D009076 1.3e-141 506.9 371 69.0
Glyma.17G099600 Glycine max HOM05D006971 ORTHO05D009076 2.9e-141 505.8 371 68.5
Nn4g23158 Nelumbo nucifera HOM05D006971 ORTHO05D009076 3.8e-141 505.4 369 69.1
MD14G1199800 Malus domestica HOM05D006971 ORTHO05D009076 6.5e-141 504.6 373 67.8
Glyma.05G027100 Glycine max HOM05D006971 ORTHO05D009076 8.5e-141 504.2 371 69.3
Lalb_Chr07g0178011 Lupinus albus HOM05D006971 ORTHO05D009076 8.5e-141 504.2 371 68.7
TPR.G9261 Trifolium pratense HOM05D006971 ORTHO05D009076 1.1e-140 503.8 371 68.5
Medtr0493s0030 Medicago truncatula HOM05D006971 ORTHO05D009076 1.4e-140 503.4 373 68.6
Thecc.03G086400 Theobroma cacao HOM05D006971 ORTHO05D009076 1.4e-140 503.4 372 68.8
PGR083G0834 Punica granatum HOM05D006971 ORTHO05D009076 1.9e-140 503.1 370 67.3
VMungo1215G2247 Vigna mungo HOM05D006971 ORTHO05D009076 3.2e-140 502.3 371 68.5
Nitab4.5_0004704g0010 Nicotiana tabacum HOM05D006971 ORTHO05D009076 7.2e-140 501.1 371 66.8
MELO3C001980.2 Cucumis melo HOM05D006971 ORTHO05D009076 1.6e-139 500.0 372 68.0
CsaV3_1G005470 Cucumis sativus L. HOM05D006971 ORTHO05D009076 4.6e-139 498.4 371 67.4
Nitab4.5_0000842g0110 Nicotiana tabacum HOM05D006971 ORTHO05D009076 4.6e-139 498.4 371 66.6
Actinidia04895 Actinidia chinensis HOM05D006971 ORTHO05D009076 5.1e-138 495.0 369 67.8
CSS0007636 Camellia sinensis var. sinensis HOM05D006971 ORTHO05D009076 8.8e-138 494.2 367 67.0
CSS0034788 Camellia sinensis var. sinensis HOM05D006971 ORTHO05D009076 8.8e-138 494.2 367 67.0
Rhsim08G0155400 Rhododendron simsii HOM05D006971 ORTHO05D009076 1.1e-137 493.8 369 68.3
arahy.Tifrunner.gnm1.ann1.QE88UD Arachis hypogaea HOM05D006971 ORTHO05D009076 2.0e-137 493.0 378 66.7
arahy.Tifrunner.gnm1.ann1.NVD91E Arachis hypogaea HOM05D006971 ORTHO05D009076 3.3e-137 492.3 378 66.4
DCAR_016549 Daucus carota HOM05D006971 ORTHO05D009076 5.7e-137 491.5 363 69.1
Lj9A463T31 Lonicera japonica HOM05D006971 ORTHO05D009076 5.7e-137 491.5 312 76.0
Aqoxy3G04167 Aquilegia oxysepala HOM05D006971 ORTHO05D009076 7.4e-137 491.1 339 70.2
Eucgr.B00501 Eucalyptus grandis HOM05D006971 ORTHO05D009076 9.7e-137 490.7 349 68.2
FAN18G2929 Fragaria x ananassa HOM05D006971 ORTHO05D009076 2.2e-136 489.6 313 76.4
COL.COLO4_28316 Corchorus olitorius HOM05D006971 ORTHO05D009076 2.8e-136 489.2 372 66.9
FAN04G0596 Fragaria x ananassa HOM05D006971 ORTHO05D009076 3.7e-136 488.8 417 61.6
HanXRQChr05g0158151 Helianthus annuus HOM05D006971 ORTHO05D009076 3.7e-136 488.8 374 67.9
FvH4_5g14981 Fragaria vesca HOM05D006971 ORTHO05D009076 8.2e-136 487.6 313 76.0
Gohir.A08G094100 Gossypium hirsutum HOM05D006971 ORTHO05D009076 6.9e-135 484.6 383 65.5
CAN.G837.13 Capsicum annuum HOM05D006971 ORTHO05D009076 2.0e-134 483.0 371 65.8
Sopen03g035080 Solanum pennellii HOM05D006971 ORTHO05D009076 2.0e-134 483.0 368 66.0
GSVIVG01008006001 Vitis vinifera HOM05D006971 ORTHO05D009076 2.6e-134 482.6 371 65.2
Duzib205G0087 Durio zibethinus HOM05D006971 ORTHO05D009076 4.5e-134 481.9 374 66.6
Gorai.004G112200 Gossypium raimondii HOM05D006971 ORTHO05D009076 4.5e-134 481.9 400 63.2
Solyc03g116110.3 Solanum lycopersicum HOM05D006971 ORTHO05D009076 4.5e-134 481.9 368 65.8
PGSC0003DMG400019536 Solanum tuberosum HOM05D006971 ORTHO05D009076 7.7e-134 481.1 368 66.0
ECA246G1831 Erigeron canadensis HOM05D006971 ORTHO05D009076 1.3e-133 480.3 364 66.2
Sed0024719 Sechium edule HOM05D006971 ORTHO05D009076 5.0e-133 478.4 371 65.8
PSO017G5818 Papaver somniferum HOM05D006971 ORTHO05D009076 8.5e-133 477.6 378 66.1
Zm00001eb099580 Zea mays HOM05D006971 ORTHO05D009076 1.1e-132 477.2 368 65.5
Oeu006511.1 Olea europaea HOM05D006971 ORTHO05D009076 1.9e-132 476.5 372 64.8
MBI02_g41659_MAGBIO Magnolia biondii HOM05D006971 ORTHO05D009076 4.7e-131 471.9 332 68.4
MSTRG.4425 Avicennia marina HOM05D006971 ORTHO05D009076 1.1e-129 467.2 371 63.9
Cc04_g16660 Coffea canephora HOM05D006971 ORTHO05D009076 2.0e-129 466.5 376 64.4
Potri.017G115100 Populus trichocarpa HOM05D006971 ORTHO05D009076 4.4e-129 465.3 370 63.2
Ah.02g113480 Amaranthus hybridus HOM05D006971 ORTHO05D009076 9.7e-129 464.2 373 65.1
SalBow7G4263 Salvia bowleyana HOM05D006971 ORTHO05D009076 1.3e-128 463.8 375 63.2
SGA_v2.0_scaffold114G31906 Striga asiatica HOM05D006971 ORTHO05D009076 3.7e-128 462.2 376 63.6
Migut.D01821 Erythranthe guttata HOM05D006971 ORTHO05D009076 6.3e-128 461.5 372 65.1
Sabra17G0095300 Salix brachista HOM05D006971 ORTHO05D009076 1.4e-127 460.3 376 61.7
Lsat_1_v5_gn_5_20140 Lactuca sativa HOM05D006971 ORTHO05D009076 2.4e-127 459.5 350 66.9
FAN13G3185 Fragaria x ananassa HOM05D006971 ORTHO05D009076 3.1e-127 459.1 300 74.3
TAR629G1638 Trochodendron aralioides HOM05D006971 ORTHO05D009076 2.6e-126 456.1 305 73.8
AUR62008412 Chenopodium quinoa HOM05D006971 ORTHO05D009076 5.0e-125 451.8 325 66.2
ATR0564G273 Amborella trichopoda HOM05D006971 ORTHO05D009076 1.1e-124 450.7 374 60.7
Peaxi162Scf00274g00071 Petunia axillaris HOM05D006971 ORTHO05D009076 3.6e-123 445.7 299 72.2
CDE07G1445 Ceratophyllum demersum HOM05D006971 ORTHO05D009076 8.8e-122 441.0 342 62.9
FAN08G1158 Fragaria x ananassa HOM05D006971 ORTHO05D009076 2.6e-121 439.5 280 76.8
PSO478G0283 Papaver somniferum HOM05D006971 ORTHO05D009076 4.4e-121 438.7 280 77.1
unitig_60.g25418 Utricularia gibba HOM05D006971 ORTHO05D009076 2.2e-120 436.4 328 65.2
AUR62021684 Chenopodium quinoa HOM05D006971 ORTHO05D009076 3.0e-114 416.0 325 62.5
EL10Ac5g11009 Beta vulgaris HOM05D006971 ORTHO05D009076 3.2e-108 396.0 438 49.3
Cfa018946 Carpinus fangiana HOM05D006971 ORTHO05D009076 8.6e-101 371.3 250 71.6
HPP92_002355 Vanilla planifolia HOM05D006971 ORTHO05D009076 4.3e-100 369.0 272 66.9
Hund02652 Selenicereus undatus HOM05D006971 ORTHO05D009076 5.6e-100 368.6 369 53.4
Pp3c23_920 Physcomitrium patens HOM05D006971 ORTHO05D009076 7.5e-97 358.2 329 52.6
Mapoly0071s0120 Marchantia polymorpha HOM05D006971 ORTHO05D009076 1.0e-93 347.8 362 51.1
Mapoly0229s0006 Marchantia polymorpha HOM05D006971 ORTHO05D009076 1.0e-93 347.8 362 51.1
Gohir.D08G105301 Gossypium hirsutum HOM05D006971 ORTHO05D009076 5.0e-93 345.5 232 73.3
Os09g0413700 Oryza sativa ssp. japonica HOM05D006971 ORTHO05D009076 3.4e-89 332.8 248 64.5
SMO111G0229 Selaginella moellendorffii HOM05D006971 ORTHO05D009076 9.8e-89 331.3 275 57.1
HPP92_002356 Vanilla planifolia HOM05D006971 ORTHO05D009076 6.4e-88 328.6 287 59.2
vmacro17544 Vaccinium macrocarpon HOM05D006971 ORTHO05D009076 8.1e-83 311.6 205 73.2
HPP92_027581 Vanilla planifolia HOM05D006971 ORTHO05D009076 7.3e-60 235.3 222 55.9
BcaB03g13848 Brassica carinata HOM05D006971 ORTHO05D009076 1.1e-58 231.5 147 81.0
Thhalv10019619m.g Eutrema salsugineum HOM05D006971 ORTHO05D009076 8.1e-51 205.3 141 78.0
ClCG04G012280 Citrullus lanatus HOM05D006971 ORTHO05D009076 3.0e-45 186.8 165 57.0
vmacro17545 Vaccinium macrocarpon HOM05D006971 ORTHO05D009076 6.7e-45 185.7 167 59.9
AagrBONN_evm.TU.Sc2ySwM_368.527 Anthoceros agrestis HOM05D006971 ORTHO05D009076 1.1e-39 168.3 182 43.4
Dinv19957 Davidia involucrata HOM05D006971 ORTHO05D009076 4.2e-39 166.4 125 68.8
SEGI_28088 Sequoiadendron giganteum HOM05D006971 ORTHO05D009076 2.4e-26 124.0 112 49.1
Actinidia37630 Actinidia chinensis HOM05D000001 ORTHO05D008780 6.5e-24 115.9 85 68.2
MD06G1192800 Malus domestica HOM05D006971 ORTHO05D009076 1.1e-18 98.6 84 60.7
HPP92_027582 Vanilla planifolia HOM05D006971 ORTHO05D009076 2.4e-18 97.4 133 44.4
CARHR067920 Cardamine hirsuta HOM05D006971 ORTHO05D116248 2.6e-17 94.0 58 86.2
A07p29310 Brassica napus HOM05D006971 ORTHO05D041645 1.6e-09 68.2 55 70.9
BraA07t30570Z Brassica rapa HOM05D006971 ORTHO05D041645 1.6e-09 68.2 55 70.9
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.6e-06 58.2 47 59.6


User provided reference genes

Program Settings