Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s2133 Capsella rubella HOM05D005938 ORTHO05D007654 2.6e-175 618.6 314 100.0
AL2G34410 Arabidopsis lyrata HOM05D005938 ORTHO05D007654 2.4e-160 568.9 315 90.8
Sp5g29710 Schrenkiella parvula HOM05D005938 ORTHO05D007654 2.5e-154 548.9 318 88.1
CARHR067810 Cardamine hirsuta HOM05D005938 ORTHO05D007654 1.1e-152 543.5 320 87.5
Thhalv10018904m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 1.2e-151 540.0 311 85.5
A07p40340 Brassica napus HOM05D005938 ORTHO05D007654 1.1e-146 523.5 317 85.2
BcaC08g46988 Brassica carinata HOM05D005938 ORTHO05D007654 2.5e-146 522.3 310 85.5
BcaC08g46886 Brassica carinata HOM05D005938 ORTHO05D007654 3.3e-146 521.9 314 84.4
BraA07t31575Z Brassica rapa HOM05D005938 ORTHO05D007654 5.0e-142 508.1 340 78.8
THA.LOC104812546 Tarenaya hassleriana HOM05D005938 ORTHO05D007654 1.5e-127 459.9 306 74.8
C06p48680 Brassica napus HOM05D005938 ORTHO05D007654 4.8e-121 438.3 262 85.5
Aa31LG7G3570 Aethionema arabicum HOM05D005938 ORTHO05D007654 3.5e-119 432.2 301 73.4
BcaC08g46884 Brassica carinata HOM05D005938 ORTHO05D007654 4.5e-119 431.8 330 73.0
AT1G74530 Arabidopsis thaliana HOM05D005938 ORTHO05D007654 2.9e-118 429.1 259 86.5
BolC6t39901H Brassica oleracea HOM05D005938 ORTHO05D007654 5.7e-114 414.8 269 81.8
Aa31LG4G4790 Aethionema arabicum HOM05D005938 ORTHO05D007654 1.1e-112 410.6 258 80.2
QL10p016543 Quercus lobata HOM05D005938 ORTHO05D007654 1.9e-109 399.8 301 66.1
CsaV3_1G002270 Cucumis sativus L. HOM05D005938 ORTHO05D007654 2.5e-109 399.4 297 66.7
Sed0010411 Sechium edule HOM05D005938 ORTHO05D007654 5.5e-109 398.3 309 64.7
Lj1g0012745 Lotus japonicus HOM05D005938 ORTHO05D007654 1.4e-107 393.7 302 63.9
Sc10g0009920 Simmondsia chinensis HOM05D005938 ORTHO05D007654 1.8e-107 393.3 307 64.8
CiPaw.11G042800 Carya illinoinensis HOM05D005938 ORTHO05D007654 2.3e-107 392.9 313 63.6
Atru.chr9.2268 Acer truncatum HOM05D005938 ORTHO05D007654 4.0e-107 392.1 304 66.1
CSS0017360 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 8.8e-107 391.0 310 65.5
CSS0040883 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 8.8e-107 391.0 310 65.5
MELO3C017167.2 Cucumis melo HOM05D005938 ORTHO05D007654 8.8e-107 391.0 297 65.7
Actinidia34992 Actinidia chinensis HOM05D005938 ORTHO05D007654 1.2e-106 390.6 303 64.4
Prupe.5G190900 Prunus persica HOM05D005938 ORTHO05D007654 2.0e-106 389.8 304 63.8
GSVIVG01008024001 Vitis vinifera HOM05D005938 ORTHO05D007654 2.0e-106 389.8 310 65.2
Lalb_Chr08g0235801 Lupinus albus HOM05D005938 ORTHO05D007654 4.4e-106 388.7 305 63.9
CANSAT80G1410 Cannabis sativa HOM05D005938 ORTHO05D007654 7.5e-106 387.9 301 63.5
Glyma.06G192800 Glycine max HOM05D005938 ORTHO05D007654 7.5e-106 387.9 315 62.5
Hund09357 Selenicereus undatus HOM05D005938 ORTHO05D007654 2.8e-105 386.0 312 62.5
PGR083G1660 Punica granatum HOM05D005938 ORTHO05D007654 6.3e-105 384.8 298 64.4
TAR374G0085 Trochodendron aralioides HOM05D005938 ORTHO05D007654 1.4e-104 383.6 302 63.6
FvH4_5g15170 Fragaria vesca HOM05D005938 ORTHO05D007654 3.1e-104 382.5 303 62.4
Phvul.009G188150 Phaseolus vulgaris HOM05D005938 ORTHO05D007654 3.1e-104 382.5 301 63.5
FAN08G1160 Fragaria x ananassa HOM05D005938 ORTHO05D007654 7.0e-104 381.3 304 61.8
MD14G1198100 Malus domestica HOM05D005938 ORTHO05D007654 1.2e-103 380.6 305 61.6
Ca_13688_v3 Cicer arietinum L. HOM05D005938 ORTHO05D007654 3.5e-103 379.0 298 62.1
Gohir.D12G179280 Gossypium hirsutum HOM05D005938 ORTHO05D007654 3.5e-103 379.0 313 62.3
CAN.G407.117 Capsicum annuum HOM05D005938 ORTHO05D007654 5.9e-103 378.3 300 63.3
Cpa.g.c30141.1 Carica papaya HOM05D005938 ORTHO05D007654 5.9e-103 378.3 265 70.2
Nitab4.5_0004103g0010 Nicotiana tabacum HOM05D005938 ORTHO05D007654 5.9e-103 378.3 309 63.4
Cfa018959 Carpinus fangiana HOM05D005938 ORTHO05D007654 7.7e-103 377.9 268 69.0
COL.COLO4_24542 Corchorus olitorius HOM05D005938 ORTHO05D007654 2.9e-102 375.9 287 66.6
Eucgr.A02632 Eucalyptus grandis HOM05D005938 ORTHO05D007654 2.9e-102 375.9 301 62.5
Solyc03g116330.3 Solanum lycopersicum HOM05D005938 ORTHO05D007654 2.9e-102 375.9 296 64.2
PGSC0003DMG400000598 Solanum tuberosum HOM05D005938 ORTHO05D007654 2.9e-102 375.9 296 63.9
TAR622G1433 Trochodendron aralioides HOM05D005938 ORTHO05D007654 3.8e-102 375.6 282 66.3
FAN13G2109 Fragaria x ananassa HOM05D005938 ORTHO05D007654 8.6e-102 374.4 296 62.5
MD06G1191700 Malus domestica HOM05D005938 ORTHO05D007654 1.1e-101 374.0 306 61.1
Ciclev10021191m.g Citrus clementina HOM05D005938 ORTHO05D007654 1.5e-101 373.6 322 61.8
FAN18G0122 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.5e-101 373.6 296 62.5
TPR.G11812 Trifolium pratense HOM05D005938 ORTHO05D007654 4.3e-101 372.1 302 60.9
MSTRG.9633 Avicennia marina HOM05D005938 ORTHO05D007654 7.2e-101 371.3 313 59.1
ECA246G4427 Erigeron canadensis HOM05D005938 ORTHO05D007654 7.2e-101 371.3 310 61.0
Gohir.A12G176500 Gossypium hirsutum HOM05D005938 ORTHO05D007654 7.2e-101 371.3 314 61.1
RcHm_v2.0_Chr7g0181011 Rosa chinensis HOM05D005938 ORTHO05D007654 9.5e-101 370.9 301 59.8
Potri.018G047400 Populus trichocarpa HOM05D005938 ORTHO05D007654 1.2e-100 370.5 281 68.3
Cc04_g16920 Coffea canephora HOM05D005938 ORTHO05D007654 1.6e-100 370.2 297 62.0
TWI15G1099 Tripterygium wilfordii HOM05D005938 ORTHO05D007654 1.6e-100 370.2 263 68.8
Rhsim12G0157100 Rhododendron simsii HOM05D005938 ORTHO05D007654 2.8e-100 369.4 302 62.6
EL10Ac5g10981 Beta vulgaris HOM05D005938 ORTHO05D007654 8.0e-100 367.9 260 68.5
Nn3g17204 Nelumbo nucifera HOM05D005938 ORTHO05D007654 1.0e-99 367.5 310 61.0
Peaxi162Scf00274g00846 Petunia axillaris HOM05D005938 ORTHO05D007654 1.0e-99 367.5 302 63.6
HanXRQChr05g0158101 Helianthus annuus HOM05D005938 ORTHO05D007654 1.4e-99 367.1 311 61.4
AUR62021711 Chenopodium quinoa HOM05D005938 ORTHO05D007654 1.8e-99 366.7 263 69.2
SalBow7G2600 Salvia bowleyana HOM05D005938 ORTHO05D007654 3.0e-99 365.9 305 61.0
PSO063G3647 Papaver somniferum HOM05D005938 ORTHO05D007654 5.2e-99 365.2 304 61.5
arahy.Tifrunner.gnm1.ann1.KGI6NM Arachis hypogaea HOM05D005938 ORTHO05D007654 1.5e-98 363.6 302 60.9
FAN04G0099 Fragaria x ananassa HOM05D005938 ORTHO05D007654 4.4e-98 362.1 294 61.6
Nitab4.5_0002257g0140 Nicotiana tabacum HOM05D005938 ORTHO05D007654 4.4e-98 362.1 337 57.6
AUR62008387 Chenopodium quinoa HOM05D005938 ORTHO05D007654 7.5e-98 361.3 263 68.1
Ah.02g113360 Amaranthus hybridus HOM05D005938 ORTHO05D007654 1.3e-97 360.5 279 65.2
ClCG06G016260 Citrullus lanatus HOM05D005938 ORTHO05D007654 2.2e-97 359.8 297 61.6
Migut.D01830 Erythranthe guttata HOM05D005938 ORTHO05D007654 2.2e-97 359.8 300 61.7
arahy.Tifrunner.gnm1.ann1.VVHC1U Arachis hypogaea HOM05D005938 ORTHO05D007654 6.4e-97 358.2 301 60.8
Sabra18G0045600 Salix brachista HOM05D005938 ORTHO05D007654 4.1e-96 355.5 261 68.6
Lj9A462G75 Lonicera japonica HOM05D005938 ORTHO05D007654 5.4e-96 355.1 283 61.1
vmacro16554 Vaccinium macrocarpon HOM05D005938 ORTHO05D007654 5.4e-96 355.1 334 57.8
Sopen03g035260 Solanum pennellii HOM05D005938 ORTHO05D007654 2.0e-95 353.2 251 67.3
Atru.BG.195.p Acer truncatum HOM05D005938 ORTHO05D007654 7.8e-95 351.3 253 69.2
Lsat_1_v5_gn_5_19401 Lactuca sativa HOM05D005938 ORTHO05D007654 1.0e-94 350.9 310 59.0
Duzib205G1012 Durio zibethinus HOM05D005938 ORTHO05D007654 1.7e-94 350.1 311 61.1
Oeu016169.1 Olea europaea HOM05D005938 ORTHO05D007654 5.0e-94 348.6 264 66.7
CDE02G0021 Ceratophyllum demersum HOM05D005938 ORTHO05D007654 5.2e-91 338.6 271 60.5
DCAR_021525 Daucus carota HOM05D005938 ORTHO05D007654 6.8e-91 338.2 300 57.7
Thecc.03G084300 Theobroma cacao HOM05D005938 ORTHO05D007654 1.2e-90 337.4 308 58.8
SGA_v2.0_scaffold114G31898 Striga asiatica HOM05D005938 ORTHO05D007654 3.4e-90 335.9 309 57.9
Gorai.008G192300 Gossypium raimondii HOM05D005938 ORTHO05D007654 5.8e-90 335.1 301 59.1
unitig_744.g24387 Utricularia gibba HOM05D005938 ORTHO05D007654 9.8e-90 334.3 297 58.2
Manes.06G094000 Manihot esculenta HOM05D005938 ORTHO05D007654 6.4e-89 331.6 309 57.9
Psat5g187160 Pisum sativum HOM05D005938 ORTHO05D007654 1.2e-87 327.4 274 61.7
Dinv38693 Davidia involucrata HOM05D005938 ORTHO05D007654 3.9e-86 322.4 249 65.9
ATR0564G381 Amborella trichopoda HOM05D005938 ORTHO05D007654 1.2e-84 317.4 288 56.9
Os08g0171000 Oryza sativa ssp. japonica HOM05D005938 ORTHO05D007654 3.6e-84 315.8 260 58.1
Aqoxy3G03351 Aquilegia oxysepala HOM05D005938 ORTHO05D007654 8.9e-83 311.2 263 61.6
Mapoly0002s0073 Marchantia polymorpha HOM05D005938 ORTHO05D007654 1.0e-78 297.7 259 56.4
SEGI_36934 Sequoiadendron giganteum HOM05D005938 ORTHO05D007654 6.6e-78 295.0 316 49.1
SHI04241 Sapria himalayana HOM05D005938 ORTHO05D007654 6.2e-76 288.5 351 47.3
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 8.9e-75 284.6 391 46.5
CSS0050188 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 4.7e-68 262.3 208 64.9
Medtr0036s0320 Medicago truncatula HOM05D005938 ORTHO05D007654 2.0e-66 256.9 192 64.1
Pp3c17_15280 Physcomitrium patens HOM05D005938 ORTHO05D007654 4.2e-64 249.2 275 49.5
AagrBONN_evm.TU.Sc2ySwM_117.1670 Anthoceros agrestis HOM05D005938 ORTHO05D007654 6.0e-63 245.4 297 45.5
Hma1.2p1_0735F.1_g210490 Hydrangea macrophylla HOM05D005938 ORTHO05D007654 8.7e-62 241.5 165 72.1
SMO270G0117 Selaginella moellendorffii HOM05D005938 ORTHO05D007654 7.3e-61 238.4 264 47.0
VMungo1309G2195 Vigna mungo HOM05D005938 ORTHO05D007654 6.2e-60 235.3 176 64.2
CBR_g66809 Chara braunii HOM05D005938 ORTHO05D007654 3.4e-58 229.6 286 41.3
MBI02_g23681_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 6.0e-55 218.8 167 66.5
FAN10G3346 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.8e-51 207.2 146 67.1
Glyma.04G170700 Glycine max HOM05D005938 ORTHO05D007654 7.4e-45 185.3 165 58.2
Zm00001eb415000 Zea mays HOM05D005938 ORTHO05D007654 3.1e-43 179.9 225 46.7
MCO16G029 Micromonas commoda HOM05D005938 ORTHO05D007654 1.1e-35 154.8 280 32.5
arahy.Tifrunner.gnm1.ann1.518D86 Arachis hypogaea HOM05D005938 ORTHO05D007654 4.2e-32 142.9 144 50.0
FAN18G0131 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.8e-30 137.5 155 49.7
MBI15_g27838_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 9.7e-29 131.7 166 48.8
VMungo0019G0001 Vigna mungo HOM05D005938 ORTHO05D007654 2.4e-27 127.1 195 43.6
QL07p001114 Quercus lobata HOM05D005938 ORTHO05D007654 1.5e-26 124.4 168 44.6
Medtr3g040450 Medicago truncatula HOM05D005938 ORTHO05D007654 2.0e-26 124.0 129 52.7
Cre12.g513300 Chlamydomonas reinhardtii HOM05D005938 ORTHO05D007654 2.2e-25 120.6 216 33.3
FAN01G1759 Fragaria x ananassa HOM05D005938 ORTHO05D007654 2.2e-25 120.6 107 56.1
PRCOL_00003564 Prasinoderma coloniale HOM05D005938 ORTHO05D007654 8.5e-25 118.6 254 34.3
CSS0038577 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 2.1e-23 114.0 84 65.5
Prupe.5G190800 Prunus persica HOM05D005938 ORTHO05D007654 8.8e-22 108.6 85 62.4
MD17G1094500 Malus domestica HOM05D005938 ORTHO05D007654 7.4e-21 105.5 79 60.8
QL02p071402 Quercus lobata HOM05D005938 ORTHO05D028155 5.3e-19 99.4 69 65.2
QL12p034017 Quercus lobata HOM05D000176 ORTHO05D000106 9.1e-19 98.6 68 66.2
Thhalv10000377m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 1.6e-10 71.2 92 47.8


User provided reference genes

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