Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 4.7e-29 130.6 68 100.0
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 1.4e-25 119.0 68 91.2
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 3.5e-24 114.4 69 89.9
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 7.7e-24 113.2 68 88.2
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 2.7e-21 104.8 66 78.8
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 6.1e-21 103.6 59 88.1
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 8.0e-21 103.2 59 88.1
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 8.0e-21 103.2 61 85.2
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 1.0e-20 102.8 59 86.4
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 1.0e-20 102.8 59 86.4
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 1.0e-20 102.8 66 78.8
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 1.4e-20 102.4 59 86.4
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 1.4e-20 102.4 59 86.4
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 1.8e-20 102.1 59 86.4
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 4.0e-20 100.9 59 84.7
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 4.0e-20 100.9 66 75.8
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 5.2e-20 100.5 59 84.7
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 5.2e-20 100.5 59 84.7
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 5.2e-20 100.5 59 84.7
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 5.2e-20 100.5 59 84.7
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 6.8e-20 100.1 59 84.7
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 6.8e-20 100.1 65 78.5
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 8.8e-20 99.8 65 80.0
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 8.8e-20 99.8 66 74.2
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 2.6e-19 98.2 65 76.9
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 3.4e-19 97.8 66 75.8
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 4.4e-19 97.4 65 76.9
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 5.7e-19 97.1 61 77.0
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 5.7e-19 97.1 63 77.8
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 5.7e-19 97.1 61 80.3
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 7.5e-19 96.7 66 75.8
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 7.5e-19 96.7 62 79.0
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 9.7e-19 96.3 65 72.3
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 9.7e-19 96.3 66 72.7
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 1.3e-18 95.9 68 73.5
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 1.3e-18 95.9 66 72.7
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 1.3e-18 95.9 66 72.7
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 1.7e-18 95.5 64 71.9
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 1.7e-18 95.5 66 74.2
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 1.7e-18 95.5 66 72.7
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.7e-18 95.5 68 70.6
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 2.2e-18 95.1 63 76.2
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 2.2e-18 95.1 63 76.2
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 2.2e-18 95.1 65 73.8
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 2.2e-18 95.1 61 78.7
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 2.2e-18 95.1 64 75.0
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 2.8e-18 94.7 58 79.3
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.8e-18 94.7 58 79.3
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.8e-18 94.7 58 79.3
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 2.8e-18 94.7 64 75.0
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 2.8e-18 94.7 58 81.0
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 3.7e-18 94.4 65 72.3
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 3.7e-18 94.4 64 71.9
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 3.7e-18 94.4 63 76.2
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 3.7e-18 94.4 66 69.7
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 4.8e-18 94.0 67 74.6
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 4.8e-18 94.0 64 73.4
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 4.8e-18 94.0 64 73.4
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 4.8e-18 94.0 69 71.0
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 4.8e-18 94.0 65 75.4
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 4.8e-18 94.0 58 77.6
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 4.8e-18 94.0 65 70.8
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 4.8e-18 94.0 64 71.9
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 6.3e-18 93.6 64 73.4
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 6.3e-18 93.6 63 77.8
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 6.3e-18 93.6 65 73.8
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 6.3e-18 93.6 64 73.4
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 6.3e-18 93.6 58 77.6
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 6.3e-18 93.6 61 73.8
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 8.3e-18 93.2 65 75.4
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 8.3e-18 93.2 66 69.7
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 8.3e-18 93.2 68 72.1
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 8.3e-18 93.2 68 72.1
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.1e-17 92.8 65 73.8
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 1.1e-17 92.8 65 70.8
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 1.1e-17 92.8 64 73.4
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 1.4e-17 92.4 64 71.9
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 1.4e-17 92.4 65 70.8
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 1.4e-17 92.4 71 69.0
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 1.4e-17 92.4 61 75.4
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 1.4e-17 92.4 61 75.4
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 1.4e-17 92.4 58 77.6
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 1.8e-17 92.0 63 77.8
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 1.8e-17 92.0 56 82.1
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 1.8e-17 92.0 56 80.4
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 1.8e-17 92.0 61 72.1
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 1.8e-17 92.0 61 73.8
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 2.4e-17 91.7 65 72.3
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 2.4e-17 91.7 61 72.1
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 2.4e-17 91.7 65 70.8
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 2.4e-17 91.7 58 75.9
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 2.4e-17 91.7 58 75.9
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.4e-17 91.7 58 77.6
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 2.4e-17 91.7 65 73.8
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 2.4e-17 91.7 64 68.8
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 2.4e-17 91.7 64 71.9
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 2.4e-17 91.7 66 72.7
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 3.1e-17 91.3 64 73.4
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 3.1e-17 91.3 58 77.6
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 4.1e-17 90.9 58 77.6
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 4.1e-17 90.9 61 73.8
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 5.3e-17 90.5 63 73.0
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 5.3e-17 90.5 61 75.4
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 7.0e-17 90.1 58 75.9
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 7.0e-17 90.1 58 77.6
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 9.1e-17 89.7 61 73.8
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 9.1e-17 89.7 59 72.9
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 9.1e-17 89.7 56 78.6
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 1.2e-16 89.4 64 68.8
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 1.2e-16 89.4 66 68.2
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 1.2e-16 89.4 66 68.2
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 1.2e-16 89.4 58 74.1
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 1.2e-16 89.4 66 66.7
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 1.6e-16 89.0 59 74.6
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 1.6e-16 89.0 59 74.6
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 1.6e-16 89.0 61 72.1
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 1.6e-16 89.0 66 66.7
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 2.0e-16 88.6 55 80.0
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 2.7e-16 88.2 58 72.4
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 3.5e-16 87.8 58 69.0
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 3.5e-16 87.8 64 68.8
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 4.5e-16 87.4 64 67.2
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 5.9e-16 87.0 56 75.0
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 5.9e-16 87.0 61 68.9
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 7.7e-16 86.7 54 81.5
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 7.7e-16 86.7 64 64.1
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.0e-15 86.3 65 69.2
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 1.3e-15 85.9 64 68.8
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.9e-15 84.7 64 67.2
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 3.8e-15 84.3 59 69.5
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 5.0e-15 84.0 53 77.4
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 6.5e-15 83.6 58 69.0
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 5.5e-14 80.5 55 72.7
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 4.7e-13 77.4 65 60.0
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 6.1e-13 77.0 51 76.5
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 8.0e-13 76.6 61 67.2
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.4e-12 75.9 51 74.5
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.4e-12 75.9 51 74.5
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 4.0e-12 74.3 59 64.4
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 5.2e-12 73.9 48 75.0
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 6.8e-12 73.6 40 85.0
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 1.2e-11 72.8 59 55.9
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 1.5e-11 72.4 59 61.0
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 2.0e-11 72.0 58 62.1
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.0e-11 72.0 58 62.1
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 2.6e-11 71.6 65 55.4
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 2.6e-11 71.6 46 71.7
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 4.4e-11 70.9 46 71.7
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 9.8e-11 69.7 58 56.9
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 9.8e-11 69.7 53 62.3
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 1.3e-10 69.3 61 57.4
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 2.8e-10 68.2 59 52.5
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 7.0e-09 63.5 59 49.2
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 9.1e-09 63.2 41 70.7
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 7.7e-08 60.1 32 87.5
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 2.3e-07 58.5 48 52.1


User provided reference genes

Program Settings