Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 1.4e-282 975.7 520 100.0
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 1.1e-268 929.5 520 91.5
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 6.9e-266 920.2 520 90.4
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 9.4e-263 909.8 520 89.4
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 4.8e-259 897.5 520 88.1
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 1.4e-250 869.4 520 87.1
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 4.0e-237 824.7 520 81.7
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 1.1e-234 816.6 521 82.0
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 1.4e-234 816.2 521 81.6
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 1.6e-233 812.8 521 81.0
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 2.7e-233 812.0 520 80.8
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 6.6e-232 807.4 520 80.4
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 4.0e-229 798.1 520 81.5
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 1.7e-216 756.1 521 76.2
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 2.0e-151 540.0 521 55.5
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 1.3e-150 537.3 538 55.4
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 2.9e-147 526.2 537 54.2
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 1.4e-146 523.9 534 52.2
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 9.4e-146 521.2 550 52.5
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 2.1e-145 520.0 532 53.6
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 7.9e-145 518.1 544 52.8
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 1.8e-144 516.9 530 53.6
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 2.3e-144 516.5 545 52.3
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 3.0e-144 516.2 530 53.8
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 1.1e-143 514.2 533 53.7
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 1.3e-142 510.8 550 51.5
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 5.3e-141 505.4 549 51.9
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 4.5e-140 502.3 540 51.9
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 1.1e-138 497.7 552 50.7
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 3.2e-138 496.1 546 49.8
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 5.5e-138 495.4 532 51.9
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 8.0e-137 491.5 524 52.7
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 2.3e-136 490.0 548 52.0
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 8.8e-136 488.0 528 51.5
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 3.3e-135 486.1 546 49.5
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 4.4e-135 485.7 529 50.1
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 2.2e-134 483.4 535 49.7
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 3.7e-134 482.6 681 43.6
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 6.3e-134 481.9 531 49.9
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 8.2e-134 481.5 512 52.7
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 1.1e-133 481.1 535 50.3
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 4.1e-133 479.2 527 50.9
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 4.1e-133 479.2 531 49.9
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 4.1e-133 479.2 538 48.9
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 5.3e-133 478.8 537 49.2
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 1.6e-132 477.2 519 51.6
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 1.0e-131 474.6 540 50.0
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 1.7e-131 473.8 543 48.6
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 1.5e-130 470.7 538 50.9
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 2.5e-130 469.9 538 50.7
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 9.4e-130 468.0 571 48.5
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 2.1e-129 466.8 538 50.4
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 6.1e-129 465.3 544 48.5
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 3.0e-128 463.0 539 49.5
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 5.2e-128 462.2 536 48.5
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 8.8e-128 461.5 540 50.0
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 1.2e-127 461.1 513 50.9
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 1.5e-127 460.7 544 48.9
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 1.5e-127 460.7 514 51.2
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 4.4e-127 459.1 514 51.0
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.7e-126 457.2 506 51.0
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 2.8e-126 456.4 549 48.6
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 4.8e-126 455.7 514 51.6
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 1.7e-123 447.2 514 50.8
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 6.5e-123 445.3 533 48.6
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 1.1e-122 444.5 523 48.2
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 2.5e-122 443.4 535 49.2
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 4.2e-122 442.6 522 50.2
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 7.2e-122 441.8 514 49.2
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 9.4e-122 441.4 538 48.3
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 3.6e-121 439.5 458 52.0
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 6.1e-121 438.7 534 48.5
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 6.1e-121 438.7 534 48.7
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 8.8e-120 434.9 537 46.7
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 2.0e-119 433.7 539 47.3
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 2.6e-119 433.3 451 53.7
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 4.4e-119 432.6 575 46.1
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 4.4e-119 432.6 539 46.9
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 7.5e-119 431.8 475 51.4
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 1.7e-118 430.6 533 47.3
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 2.4e-117 426.8 502 50.2
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 2.4e-117 426.8 529 47.4
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 5.4e-117 425.6 539 46.6
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 1.3e-115 421.0 438 50.5
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 2.5e-114 416.8 531 47.6
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 3.3e-114 416.4 388 57.7
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 4.0e-112 409.5 497 50.3
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 7.3e-106 388.7 537 45.6
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 1.4e-104 384.4 524 46.6
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 6.4e-102 375.6 539 42.9
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 9.2e-101 371.7 431 46.6
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 7.3e-98 362.1 474 46.6
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 3.6e-97 359.8 525 45.0
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 9.8e-95 351.7 349 54.2
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 8.3e-94 348.6 543 40.7
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 2.4e-85 320.5 378 49.5
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 1.5e-82 311.2 313 55.0
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 3.4e-79 300.1 326 51.2
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 5.1e-75 286.2 468 41.7
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 6.6e-75 285.8 365 45.5
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 8.7e-75 285.4 495 37.2
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 1.1e-72 278.5 545 35.6
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 1.2e-71 275.0 509 39.1
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 7.6e-71 272.3 283 54.4
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 2.4e-69 267.3 321 49.8
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 2.7e-68 263.8 536 34.5
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 9.6e-66 255.4 448 37.9
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 1.8e-56 224.6 436 35.1
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 1.5e-55 221.5 217 53.9
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 8.4e-54 215.7 277 46.2
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.2e-52 211.8 379 36.1
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 3.5e-52 210.3 260 47.7
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.8e-51 208.0 165 63.6
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 1.8e-51 208.0 276 45.7
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 3.4e-47 193.7 409 34.0
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 2.1e-44 184.5 336 38.1
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 8.7e-43 179.1 260 41.9
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 3.7e-41 173.7 262 43.9
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 8.2e-41 172.6 158 57.6
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 4.2e-37 160.2 196 44.9
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 2.2e-33 147.9 158 50.6
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 2.2e-30 137.9 152 48.7
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 8.5e-30 136.0 190 44.2
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 2.5e-29 134.4 123 58.5
BcaC01g04920 Brassica carinata HOM05D005606 ORTHO05D006446 4.2e-29 133.7 123 65.0
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 1.8e-27 128.3 117 57.3
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 1.1e-26 125.6 143 50.3
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 3.1e-24 117.5 263 36.1
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 9.7e-18 95.9 113 51.3
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 6.3e-17 93.2 191 35.6
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 3.1e-16 90.9 234 34.2
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 1.2e-15 89.0 164 38.4
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 5.0e-14 83.6 109 49.5
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 1.2e-07 62.4 91 40.7
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 1.2e-07 62.4 91 40.7


User provided reference genes

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