Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 9.8e-203 709.9 359 100.0
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 5.4e-193 677.6 359 95.3
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 1.6e-192 676.0 359 95.5
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 7.8e-184 647.1 359 90.8
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 1.0e-183 646.7 359 90.8
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 1.3e-183 646.4 359 89.7
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 1.1e-182 643.3 356 89.9
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 4.3e-182 641.3 356 89.6
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 5.6e-182 641.0 356 89.6
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 1.9e-177 625.9 359 86.9
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 3.9e-167 591.7 358 82.1
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 1.3e-157 560.1 356 79.5
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 1.0e-154 550.4 318 83.3
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 1.7e-154 549.7 343 79.9
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 4.9e-154 548.1 349 77.7
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 4.9e-154 548.1 341 78.3
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 6.5e-154 547.7 318 83.0
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 8.4e-154 547.4 318 83.6
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 1.1e-153 547.0 349 77.4
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 2.5e-153 545.8 351 76.9
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 2.5e-153 545.8 328 79.0
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 4.2e-153 545.0 322 82.3
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 5.5e-153 544.7 327 80.7
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 1.2e-152 543.5 357 76.2
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 1.2e-152 543.5 352 76.4
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 1.6e-152 543.1 361 76.7
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 1.6e-152 543.1 354 77.1
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 2.1e-152 542.7 318 81.8
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 6.0e-152 541.2 344 76.5
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 6.0e-152 541.2 322 81.4
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 6.0e-152 541.2 328 78.0
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 6.0e-152 541.2 352 76.1
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 6.0e-152 541.2 322 81.4
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 7.9e-152 540.8 319 80.3
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 7.9e-152 540.8 319 80.3
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 1.8e-151 539.7 322 81.4
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 2.3e-151 539.3 322 80.1
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 3.0e-151 538.9 319 81.2
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 3.9e-151 538.5 322 81.1
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 5.1e-151 538.1 353 75.9
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 8.7e-151 537.3 323 79.9
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 1.9e-150 536.2 339 77.6
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 1.9e-150 536.2 320 80.0
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 3.3e-150 535.4 321 79.4
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 4.3e-150 535.0 341 78.9
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 4.3e-150 535.0 319 80.6
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 4.3e-150 535.0 322 81.4
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 1.6e-149 533.1 322 80.1
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 1.6e-149 533.1 319 79.9
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 1.6e-149 533.1 357 75.1
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 6.3e-149 531.2 348 74.4
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 1.1e-148 530.4 322 79.5
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 3.1e-148 528.9 338 76.0
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 5.3e-148 528.1 320 80.0
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 6.9e-148 527.7 369 71.3
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 6.9e-148 527.7 318 80.8
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 1.5e-147 526.6 352 74.1
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 1.5e-147 526.6 342 78.4
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 1.5e-147 526.6 317 80.8
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 1.5e-147 526.6 318 79.2
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 2.6e-147 525.8 319 81.2
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 2.6e-147 525.8 350 72.9
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 3.4e-147 525.4 327 77.1
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 3.4e-147 525.4 319 78.1
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 7.7e-147 524.2 356 72.8
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 6.5e-146 521.2 323 77.4
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 4.2e-145 518.5 315 79.0
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.6e-144 516.5 347 73.8
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 2.7e-144 515.8 328 76.2
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 1.4e-143 513.5 316 78.2
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 3.9e-143 511.9 349 73.6
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 2.5e-142 509.2 334 75.7
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 3.3e-142 508.8 359 69.4
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 1.3e-141 506.9 359 68.8
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 1.4e-140 503.4 379 68.3
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 1.2e-139 500.4 351 69.5
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 1.2e-139 500.4 382 66.2
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 3.4e-139 498.8 351 70.4
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 2.2e-138 496.1 353 70.8
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 3.6e-136 488.8 322 74.5
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 1.4e-135 486.9 342 69.3
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 1.3e-133 480.3 337 70.0
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 3.1e-132 475.7 276 82.6
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 4.5e-131 471.9 319 72.7
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.5e-126 456.8 275 80.0
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 6.3e-125 451.4 268 81.7
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 9.1e-124 447.6 274 77.7
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 3.5e-123 445.7 355 66.2
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 6.5e-122 441.4 266 85.3
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 8.0e-120 434.5 267 78.3
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 3.7e-117 425.6 265 78.1
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 4.8e-117 425.2 318 63.8
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 4.8e-117 425.2 259 80.3
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 4.1e-116 422.2 314 62.7
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 5.0e-114 415.2 268 71.6
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 8.5e-114 414.5 319 62.4
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 1.3e-106 390.6 322 57.1
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 1.7e-101 373.6 267 69.3
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 2.2e-101 373.2 249 74.3
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 1.1e-100 370.9 272 68.4
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 8.6e-98 361.3 290 65.5
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 8.0e-96 354.8 227 77.5
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 2.6e-78 296.6 269 62.1
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 3.6e-72 276.2 328 42.4
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 3.6e-72 276.2 328 42.4
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 6.8e-71 271.9 334 44.3
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 5.8e-70 268.9 273 54.6
Sc12g0008350 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.7e-69 267.3 154 83.8
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 3.8e-69 266.2 170 76.5
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 2.4e-68 263.5 311 44.7
Hma1.2p1_0109F.1_g052630 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 1.1e-60 238.0 165 73.3
Ca_20538_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 5.4e-60 235.7 130 85.4
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 3.5e-59 233.0 204 59.3
MCO09G747 Micromonas commoda HOM05D005969 ORTHO05D007407 1.2e-35 154.8 388 32.5
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-35 152.9 94 74.5
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 1.3e-34 151.4 91 78.0
SEGI_39006 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 2.8e-32 143.7 85 77.6
HanXRQChr04g0099751 Helianthus annuus HOM05D005969 ORTHO05D007407 5.9e-30 136.0 79 81.0
Sc12g0008300 Simmondsia chinensis HOM05D005969 ORTHO05D007407 3.6e-27 126.7 90 67.8
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 3.8e-21 106.7 125 44.8
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 3.2e-20 103.6 58 87.9
arahy.Tifrunner.gnm1.ann1.4WI1XR Arachis hypogaea HOM05D005969 ORTHO05D007407 3.9e-18 96.7 105 49.5
QL04p063552 Quercus lobata HOM05D005969 ORTHO05D007407 1.3e-16 91.7 74 63.5
Hma1.2p1_0109F.1_g052620 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 5.3e-15 86.3 54 77.8
Glyma.07G022602 Glycine max HOM05D005969 ORTHO05D007407 1.2e-14 85.1 59 72.9
SEGI_03763 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 3.5e-14 83.6 55 70.9
SEGI_15560 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 3.5e-14 83.6 55 70.9
HanXRQChr14g0426781 Helianthus annuus HOM05D005969 ORTHO05D007407 2.9e-13 80.5 47 80.9
PGSC0003DMG400019818 Solanum tuberosum HOM05D005969 ORTHO05D007407 1.5e-12 78.2 95 48.4
Potri.003G182801 Populus trichocarpa HOM05D005969 ORTHO05D007407 9.4e-12 75.5 75 54.7
TPR.G26782 Trifolium pratense HOM05D009488 ORTHO05D011222 2.3e-10 70.9 87 47.1
Lj9C492T13 Lonicera japonica HOM05D005969 ORTHO05D007407 6.7e-10 69.3 75 54.7
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 6.7e-10 69.3 324 27.2
QL05p035860 Quercus lobata HOM05D005969 ORTHO05D007407 6.7e-10 69.3 70 54.3
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 8.8e-10 68.9 290 23.8
TPR.G23080 Trifolium pratense HOM05D005969 ORTHO05D007407 1.1e-09 68.6 40 80.0
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 1.5e-09 68.2 297 25.3
Actinidia18147 Actinidia chinensis HOM05D001237 ORTHO05D009110 2.0e-09 67.8 297 26.9
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 4.4e-09 66.6 324 27.2
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 7.4e-09 65.9 308 27.9
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 9.7e-09 65.5 312 25.0
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 1.3e-08 65.1 312 26.0
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 3.7e-08 63.5 278 28.1
Cc00_g24190 Coffea canephora HOM05D001237 ORTHO05D009110 4.8e-08 63.2 301 24.6
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 6.3e-08 62.8 281 23.8
HanXRQChr04g0099771 Helianthus annuus HOM05D005969 ORTHO05D007407 6.3e-08 62.8 42 73.8
Medtr5g027220 Medicago truncatula HOM05D001237 ORTHO05D009110 6.3e-08 62.8 322 25.5
arahy.Tifrunner.gnm1.ann1.GZLR9S Arachis hypogaea HOM05D005969 ORTHO05D007407 8.2e-08 62.4 33 81.8
Psat6g223920 Pisum sativum HOM05D002710 ORTHO05D002905 1.4e-07 61.6 41 70.7
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 1.4e-07 61.6 312 26.3
Nitab4.5_0001033g0010 Nicotiana tabacum HOM05D001237 ORTHO05D009110 4.1e-07 60.1 294 25.2
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 4.1e-07 60.1 353 24.9
Nitab4.5_0002735g0030 Nicotiana tabacum HOM05D001237 ORTHO05D009110 7.0e-07 59.3 308 25.3
FAN18G3541 Fragaria x ananassa HOM05D001237 ORTHO05D009110 1.2e-06 58.5 295 24.4
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 1.2e-06 58.5 295 24.4
AagrBONN_evm.TU.Sc2ySwM_344.3693 Anthoceros agrestis HOM05D001237 ORTHO05D009110 1.6e-06 58.2 258 26.4
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 1.6e-06 58.2 294 23.8
ECA233G0844 Erigeron canadensis HOM05D001237 ORTHO05D009110 2.6e-06 57.4 323 25.4
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 7.7e-06 55.8 274 25.5
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 7.7e-06 55.8 287 25.1
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 7.7e-06 55.8 291 26.1


User provided reference genes

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