Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 0.0e+00 1310.4 665 100.0
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 0.0e+00 1250.3 659 96.1
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 0.0e+00 1239.2 666 94.7
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 0.0e+00 1238.0 659 94.1
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 0.0e+00 1221.5 657 93.0
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 0.0e+00 1213.7 662 92.3
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 0.0e+00 1198.7 660 91.7
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 0.0e+00 1198.7 660 91.7
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 0.0e+00 1197.6 658 91.9
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 0.0e+00 1190.3 671 90.2
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 0.0e+00 1143.3 658 87.5
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 0.0e+00 1133.6 649 88.1
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 0.0e+00 1132.1 664 86.6
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 0.0e+00 1130.9 659 86.6
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 0.0e+00 1129.8 658 86.8
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 0.0e+00 1125.2 658 86.3
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 3.5e-310 1067.8 662 81.6
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 7.0e-263 910.6 649 71.0
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 2.3e-261 905.6 648 69.6
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 6.6e-261 904.0 648 69.0
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 1.5e-260 902.9 649 68.9
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 2.5e-260 902.1 649 68.9
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 3.3e-260 901.7 648 69.4
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 2.1e-259 899.0 661 68.7
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 8.0e-259 897.1 649 68.7
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 3.4e-257 891.7 643 70.3
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 9.8e-257 890.2 660 67.4
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 4.1e-255 884.8 647 68.3
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 7.8e-254 880.6 658 66.7
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 1.3e-253 879.8 648 67.7
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 1.3e-253 879.8 658 66.7
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 1.1e-252 876.7 650 67.4
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 1.9e-252 875.9 660 65.6
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 3.3e-252 875.2 663 66.1
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 3.3e-252 875.2 650 66.0
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 3.4e-249 865.1 658 67.2
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 3.4e-249 865.1 655 67.0
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 3.4e-249 865.1 661 65.8
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 9.9e-249 863.6 643 67.8
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 8.3e-248 860.5 658 65.5
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 8.3e-248 860.5 655 65.5
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 1.4e-247 859.8 648 66.0
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 2.4e-247 859.0 660 65.9
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 4.1e-247 858.2 644 67.2
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 4.6e-246 854.7 648 65.6
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 7.8e-246 854.0 643 66.9
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 3.9e-245 851.7 642 67.4
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 6.6e-245 850.9 647 66.6
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 8.6e-245 850.5 647 66.5
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 3.3e-244 848.6 641 66.3
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 7.3e-244 847.4 641 66.3
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 7.3e-244 847.4 643 65.2
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 1.6e-243 846.3 648 66.2
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 2.1e-243 845.9 651 66.7
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 2.8e-243 845.5 662 66.0
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 8.9e-242 840.5 642 65.4
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 2.6e-241 839.0 642 65.3
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 5.8e-241 837.8 642 65.4
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 4.9e-240 834.7 619 67.0
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 8.4e-240 833.9 576 70.5
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 1.9e-239 832.8 642 65.4
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 1.2e-238 830.1 654 64.1
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 3.5e-238 828.6 651 64.5
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 3.9e-237 825.1 648 65.4
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 8.7e-237 823.9 645 65.1
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 2.5e-236 822.4 644 63.2
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 5.6e-236 821.2 649 64.3
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 1.7e-232 809.7 648 63.9
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 2.9e-232 808.9 646 63.5
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 3.2e-231 805.4 654 63.3
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 5.4e-231 804.7 653 62.5
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 7.1e-231 804.3 657 62.1
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 1.6e-230 803.1 653 62.5
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 1.0e-229 800.4 645 64.5
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 3.0e-229 798.9 642 64.3
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 5.1e-229 798.1 642 62.6
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 6.6e-229 797.7 642 62.9
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 8.7e-229 797.3 655 61.7
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 1.4e-223 780.0 613 64.3
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 5.6e-220 768.1 651 61.1
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 2.8e-219 765.8 657 60.9
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 3.5e-214 748.8 649 59.5
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 6.0e-214 748.0 654 61.0
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 1.3e-211 740.3 652 59.0
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 6.2e-211 738.0 651 58.8
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 1.8e-210 736.5 679 58.9
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 1.4e-207 726.9 651 59.0
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 2.0e-201 706.4 643 59.1
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 3.6e-198 695.7 556 63.3
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 1.1e-194 684.1 525 65.3
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 1.6e-190 670.2 644 56.1
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 6.5e-184 648.3 555 59.5
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 8.5e-184 647.9 617 56.7
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 3.6e-182 642.5 673 53.3
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 1.1e-178 630.9 630 53.5
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 2.2e-176 623.2 649 55.6
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 6.6e-160 568.5 445 62.5
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 3.5e-153 546.2 664 46.4
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 4.7e-150 535.8 497 55.3
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 6.1e-150 535.4 627 46.1
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 1.0e-149 534.6 575 52.7
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 1.4e-146 524.2 676 43.9
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 3.0e-144 516.5 649 47.1
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 2.3e-141 506.9 645 43.6
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 4.6e-113 412.9 628 39.0
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 4.2e-82 310.1 336 52.4
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 5.1e-72 276.6 222 59.0
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 5.5e-50 203.4 280 46.1
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 2.8e-46 191.0 157 58.0
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 5.9e-44 183.3 122 73.8
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 1.5e-42 178.7 278 39.9
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 1.2e-39 169.1 107 78.5
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 2.6e-39 167.9 141 63.1
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 9.8e-39 166.0 107 77.6
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.7e-38 165.2 156 51.9
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 3.5e-36 157.5 110 74.5
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 5.9e-36 156.8 142 55.6
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 7.8e-36 156.4 156 52.6
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 8.6e-35 152.9 229 38.4
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 1.2e-33 149.1 131 56.5
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 8.9e-32 142.9 160 48.1
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 1.2e-31 142.5 97 73.2
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 3.7e-30 137.5 86 77.9
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 4.6e-28 130.6 87 70.1
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 2.5e-26 124.8 81 80.2
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 1.4e-24 119.0 80 77.5
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 8.9e-24 116.3 79 70.9
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 3.2e-21 107.8 101 51.5
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 3.6e-17 94.4 88 58.0
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 1.3e-14 85.9 56 69.6
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 3.2e-13 81.3 54 75.9
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 7.1e-13 80.1 89 48.3
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 2.7e-12 78.2 518 22.2
HanXRQChr09g0276291 Helianthus annuus HOM05D005721 ORTHO05D006758 3.0e-11 74.7 48 70.8
MCO06G118 Micromonas commoda HOM05D005721 ORTHO05D006758 1.5e-07 62.4 244 25.0


User provided reference genes

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