Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 0.0e+00 1726.8 1050 100.0
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 0.0e+00 1473.0 1025 86.0
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 0.0e+00 1449.5 1028 83.0
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 0.0e+00 1375.9 1045 80.5
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 0.0e+00 1362.1 1029 80.3
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 0.0e+00 1359.7 916 81.6
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 0.0e+00 1280.0 911 79.3
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 0.0e+00 1249.6 915 77.4
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 0.0e+00 1248.8 903 77.9
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 0.0e+00 1241.5 925 76.5
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 0.0e+00 1213.0 919 76.2
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 0.0e+00 1204.1 906 75.6
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 0.0e+00 1196.8 908 73.3
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 2.9e-295 1018.8 919 64.7
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 2.3e-292 1009.2 875 64.7
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 6.2e-290 1001.1 946 61.5
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 1.8e-289 999.6 918 63.3
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 3.1e-289 998.8 918 63.3
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 2.9e-287 992.3 877 62.8
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 1.9e-286 989.6 864 63.2
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 4.2e-286 988.4 916 62.1
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 7.9e-285 984.2 916 62.8
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 5.1e-284 981.5 916 63.6
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 5.1e-284 981.5 908 61.3
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 6.7e-284 981.1 885 62.3
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 8.7e-284 980.7 887 62.1
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 3.3e-283 978.8 864 62.7
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 4.8e-282 974.9 939 61.2
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 3.4e-280 968.8 910 62.6
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 3.4e-280 968.8 874 62.6
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 4.5e-280 968.4 914 62.4
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 1.0e-279 967.2 907 61.6
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 1.0e-279 967.2 910 64.0
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 2.2e-279 966.1 951 60.9
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 2.9e-279 965.7 910 61.3
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 1.1e-278 963.8 908 62.4
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 5.5e-278 961.4 909 62.4
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 1.6e-277 959.9 907 62.4
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 2.1e-277 959.5 916 62.3
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 2.7e-277 959.1 872 63.1
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 1.1e-275 953.7 906 61.3
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 1.5e-275 953.4 911 61.4
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 1.5e-275 953.4 915 61.6
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 2.5e-275 952.6 909 61.6
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 4.8e-274 948.3 934 61.2
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 4.2e-270 935.3 947 58.3
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 9.4e-270 934.1 880 60.1
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 7.9e-269 931.0 878 60.3
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 2.3e-268 929.5 948 58.4
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 5.1e-268 928.3 855 63.0
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 5.1e-268 928.3 872 60.3
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 5.1e-268 928.3 970 57.4
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 6.7e-268 927.9 911 58.5
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 1.5e-267 926.8 910 60.2
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 4.4e-267 925.2 916 59.8
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 4.1e-265 918.7 864 59.3
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 1.5e-264 916.8 918 60.0
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.0e-264 916.4 913 59.5
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 2.0e-264 916.4 940 59.5
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 2.6e-264 916.0 909 58.3
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 7.7e-264 914.4 907 60.1
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 7.7e-264 914.4 911 60.3
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.1e-262 910.6 875 59.2
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 3.2e-262 909.1 864 60.2
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 5.5e-262 908.3 869 60.6
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 2.7e-261 906.0 873 59.3
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 3.6e-261 905.6 878 58.4
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 8.0e-261 904.4 918 60.2
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.0e-260 904.0 916 59.3
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.3e-260 902.9 918 60.6
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 3.0e-260 902.5 925 58.8
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 4.4e-259 898.7 905 59.3
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 2.2e-258 896.3 911 58.1
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 3.1e-257 892.5 883 57.5
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 4.5e-256 888.6 912 58.3
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 5.9e-256 888.3 878 58.2
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 4.7e-253 878.6 927 57.8
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 6.1e-253 878.2 874 57.2
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 3.1e-249 865.9 878 58.0
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 4.1e-249 865.5 881 56.4
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 5.3e-249 865.1 918 58.5
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 6.5e-247 858.2 861 57.3
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 5.5e-246 855.1 1067 52.4
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 8.0e-245 851.3 879 56.0
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 6.8e-244 848.2 915 58.7
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 5.7e-243 845.1 873 55.2
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 4.8e-242 842.0 888 53.6
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 2.7e-240 836.3 910 57.8
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 1.3e-239 833.9 935 56.1
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 1.0e-236 824.3 868 55.5
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 6.8e-236 821.6 573 80.3
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.6e-235 819.7 883 55.5
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 1.2e-227 794.3 881 52.6
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 1.2e-224 784.3 930 50.9
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 4.6e-224 782.3 922 50.4
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 1.0e-223 781.2 921 53.9
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 3.1e-220 769.6 904 53.1
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.6e-216 757.3 652 63.7
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 5.6e-214 748.8 894 50.9
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 8.3e-210 734.9 724 58.1
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 3.2e-201 706.4 598 65.6
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 6.6e-199 698.7 625 61.6
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.1e-190 671.4 577 66.6
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 4.5e-187 659.4 626 60.7
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 3.0e-183 646.7 919 44.2
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 3.9e-183 646.4 856 46.8
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 1.1e-180 638.3 861 46.1
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 1.3e-175 621.3 970 42.0
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 6.5e-170 602.4 921 43.0
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 6.7e-151 539.3 831 40.9
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 2.6e-150 537.3 755 49.0
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 1.7e-146 524.6 518 60.6
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 1.2e-136 491.9 857 38.4
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.6e-136 491.5 725 43.0
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 6.8e-135 486.1 459 63.2
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 7.5e-134 482.6 514 54.7
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 3.9e-114 417.2 367 63.2
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 1.1e-103 382.5 990 34.1
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.2e-91 342.4 376 53.2
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 6.9e-71 273.5 623 35.3
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 1.2e-70 272.7 627 35.1
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 2.9e-69 268.1 704 31.2
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 1.2e-67 262.7 424 40.8
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 3.5e-67 261.2 318 52.8
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 4.2e-60 237.7 203 65.0
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 5.9e-54 217.2 243 54.7
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.3e-48 199.5 179 63.1
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.2e-43 183.0 245 48.6
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 7.7e-38 163.7 102 73.5
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 7.0e-31 140.6 161 49.7
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 1.6e-27 129.4 173 50.9
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 6.1e-27 127.5 124 61.3
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 6.7e-26 124.0 130 53.8
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 1.8e-18 99.4 84 56.0
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 8.8e-18 97.1 51 88.2
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 1.2e-17 96.7 64 73.4
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.1e-12 80.1 81 49.4
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 8.8e-10 70.5 45 73.3
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 8.8e-10 70.5 45 73.3
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 3.4e-09 68.6 45 71.1
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 3.4e-09 68.6 45 71.1
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 7.5e-09 67.4 45 68.9
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 2.4e-07 62.4 37 75.7
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 2.0e-06 59.3 38 71.1
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 3.5e-06 58.5 82 53.7


User provided reference genes

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