Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1909 Capsella rubella HOM05D007344 ORTHO05D009010 3.6e-126 454.9 228 100.0
Sp5g27360 Schrenkiella parvula HOM05D007344 ORTHO05D009010 5.7e-71 271.6 232 65.5
Carub.0002s1914 Capsella rubella HOM05D007344 ORTHO05D009010 9.1e-69 264.2 228 63.2
Carub.0002s1910 Capsella rubella HOM05D007344 ORTHO05D009010 2.7e-65 252.7 233 61.8
AT1G72290 Arabidopsis thaliana HOM05D007344 ORTHO05D009010 5.7e-63 245.0 213 61.0
Thhalv10019095m.g Eutrema salsugineum HOM05D007344 ORTHO05D009010 1.7e-62 243.4 232 60.3
AL2G31960 Arabidopsis lyrata HOM05D007344 ORTHO05D009010 1.4e-61 240.4 229 58.1
A07p38410 Brassica napus HOM05D007344 ORTHO05D009010 7.0e-61 238.0 232 57.3
BraA07t31402Z Brassica rapa HOM05D007344 ORTHO05D009010 7.0e-61 238.0 232 57.3
Carub.0002s1912 Capsella rubella HOM05D007344 ORTHO05D009010 1.2e-60 237.3 232 58.6
BolC6t39697H Brassica oleracea HOM05D007344 ORTHO05D009010 1.0e-59 234.2 231 58.9
CARHR065170 Cardamine hirsuta HOM05D007344 ORTHO05D009010 1.3e-59 233.8 224 60.3
BcaC08g46676 Brassica carinata HOM05D007344 ORTHO05D009010 2.9e-59 232.6 231 58.4
C06p46520 Brassica napus HOM05D007344 ORTHO05D009010 2.9e-59 232.6 231 58.4
C06p46460 Brassica napus HOM05D007344 ORTHO05D009010 5.5e-58 228.4 223 58.3
BolC6t39693H Brassica oleracea HOM05D007344 ORTHO05D009010 1.6e-57 226.9 223 58.3
BcaB02g07012 Brassica carinata HOM05D007344 ORTHO05D009010 2.3e-56 223.0 224 58.0
BcaB03g14972 Brassica carinata HOM05D007344 ORTHO05D009010 3.0e-56 222.6 225 56.9
BcaB03g14974 Brassica carinata HOM05D007344 ORTHO05D009010 3.0e-56 222.6 225 56.9
BcaB03g14973 Brassica carinata HOM05D007344 ORTHO05D009010 2.0e-55 219.9 224 57.6
A02p17920 Brassica napus HOM05D007344 ORTHO05D009010 3.1e-53 212.6 224 58.0
BolC6t39698H Brassica oleracea HOM05D007344 ORTHO05D009010 3.1e-53 212.6 226 57.5
BraA02t06839Z Brassica rapa HOM05D007344 ORTHO05D009010 3.1e-53 212.6 224 58.0
CARHR065180 Cardamine hirsuta HOM05D007344 ORTHO05D009010 7.7e-52 208.0 231 57.1
C02p29770 Brassica napus HOM05D007344 ORTHO05D009010 1.0e-51 207.6 224 56.7
BolC2t09025H Brassica oleracea HOM05D007344 ORTHO05D009010 2.2e-51 206.5 224 56.7
BcaC08g46673 Brassica carinata HOM05D007344 ORTHO05D009010 3.8e-51 205.7 229 52.8
C06p46430 Brassica napus HOM05D007344 ORTHO05D009010 3.8e-51 205.7 229 52.8
BraA07t31400Z Brassica rapa HOM05D007344 ORTHO05D009010 1.1e-50 204.1 231 52.4
A02p17860 Brassica napus HOM05D007344 ORTHO05D009010 2.5e-50 203.0 226 51.8
BraA02t06836Z Brassica rapa HOM05D007344 ORTHO05D009010 2.5e-50 203.0 226 51.8
BcaB03g14970 Brassica carinata HOM05D007344 ORTHO05D009010 3.2e-50 202.6 215 51.6
BcaB05g24743 Brassica carinata HOM05D007344 ORTHO05D009010 3.6e-49 199.1 225 54.7
BcaB05g24739 Brassica carinata HOM05D007344 ORTHO05D009010 6.1e-49 198.4 228 50.4
BcaB05g24740 Brassica carinata HOM05D007344 ORTHO05D009010 4.0e-48 195.7 225 53.8
BcaC03g15361 Brassica carinata HOM05D007344 ORTHO05D009010 5.2e-48 195.3 224 50.4
BolC6t39696H Brassica oleracea HOM05D007344 ORTHO05D009010 2.8e-46 189.5 202 53.5
BcaC03g15366 Brassica carinata HOM05D007344 ORTHO05D009010 1.4e-45 187.2 226 50.0
C02p29750 Brassica napus HOM05D007344 ORTHO05D009010 1.4e-45 187.2 226 50.0
BcaB03g14976 Brassica carinata HOM05D007344 ORTHO05D009010 3.1e-45 186.0 231 49.8
BcaB05g24737 Brassica carinata HOM05D007344 ORTHO05D009010 6.5e-43 178.3 226 47.8
BolC2t09022H Brassica oleracea HOM05D007344 ORTHO05D009010 3.2e-42 176.0 218 48.6
BcaB05g24736 Brassica carinata HOM05D007344 ORTHO05D009010 9.4e-42 174.5 226 47.8
BcaC03g15365 Brassica carinata HOM05D007344 ORTHO05D009010 2.1e-41 173.3 218 48.2
C02p29730 Brassica napus HOM05D007344 ORTHO05D009010 2.1e-41 173.3 218 48.2
A02p17890 Brassica napus HOM05D007344 ORTHO05D009010 2.7e-41 172.9 218 47.2
BraA02t06838Z Brassica rapa HOM05D007344 ORTHO05D009010 2.7e-41 172.9 218 47.2
BcaB03g14975 Brassica carinata HOM05D007344 ORTHO05D009010 8.0e-41 171.4 223 49.8
A07p38440 Brassica napus HOM05D007344 ORTHO05D009010 1.0e-40 171.0 224 48.7
BolC6t39700H Brassica oleracea HOM05D007344 ORTHO05D009010 5.2e-40 168.7 224 48.2
BraA07t31405Z Brassica rapa HOM05D007344 ORTHO05D009010 5.2e-40 168.7 224 48.2
BcaC08g46679 Brassica carinata HOM05D007344 ORTHO05D009010 6.8e-40 168.3 223 49.3
C06p46550 Brassica napus HOM05D007344 ORTHO05D009010 6.8e-40 168.3 223 49.3
BcaC08g46677 Brassica carinata HOM05D007344 ORTHO05D009010 3.4e-39 166.0 216 49.5
BcaC08g46678 Brassica carinata HOM05D007344 ORTHO05D009010 2.8e-38 162.9 220 48.2
C06p46540 Brassica napus HOM05D007344 ORTHO05D009010 2.8e-38 162.9 220 48.2
BolC6t39699H Brassica oleracea HOM05D007344 ORTHO05D009010 2.8e-38 162.9 220 48.2
AL2G31970 Arabidopsis lyrata HOM05D007344 ORTHO05D009010 1.1e-37 161.0 168 54.8
CARHR065160 Cardamine hirsuta HOM05D007344 ORTHO05D009010 1.8e-37 160.2 220 47.3
A07p38420 Brassica napus HOM05D007344 ORTHO05D009010 5.4e-37 158.7 220 47.7
BraA07t31403Z Brassica rapa HOM05D007344 ORTHO05D009010 5.4e-37 158.7 220 47.7
C06p46590 Brassica napus HOM05D007344 ORTHO05D009010 4.5e-36 155.6 229 47.2
BolC6t39705H Brassica oleracea HOM05D007344 ORTHO05D009010 4.5e-36 155.6 229 47.2
BolC2t09020H Brassica oleracea HOM05D007344 ORTHO05D009010 8.6e-35 151.4 192 47.4
BolC6t39707H Brassica oleracea HOM05D007344 ORTHO05D009010 1.5e-31 140.6 220 43.2
BcaC08g46682 Brassica carinata HOM05D007344 ORTHO05D009010 4.1e-29 132.5 179 46.4
BolC6t39694H Brassica oleracea HOM05D007344 ORTHO05D009010 2.7e-28 129.8 237 38.4
BraA09t39269Z Brassica rapa HOM05D007344 ORTHO05D009010 7.8e-28 128.3 236 41.1
A09p37590 Brassica napus HOM05D007344 ORTHO05D009010 1.0e-27 127.9 231 41.1
BolC6t39691H Brassica oleracea HOM05D007344 ORTHO05D009010 1.3e-27 127.5 229 38.9
BcaC05g26866 Brassica carinata HOM05D007344 ORTHO05D009010 2.9e-27 126.3 231 41.6
BcaB07g32467 Brassica carinata HOM05D007344 ORTHO05D009010 6.6e-27 125.2 240 40.8
Aa31LG6G10960 Aethionema arabicum HOM05D007344 ORTHO05D009010 8.6e-27 124.8 226 38.5
BolC5t31464H Brassica oleracea HOM05D007344 ORTHO05D009010 8.6e-27 124.8 231 41.1
C05p27460 Brassica napus HOM05D007344 ORTHO05D009010 9.5e-26 121.3 241 39.4
A07p11180 Brassica napus HOM05D007344 ORTHO05D009010 1.8e-24 117.1 224 39.3
BraA07t28908Z Brassica rapa HOM05D007344 ORTHO05D009010 1.8e-24 117.1 224 39.3
BcaC06g35373 Brassica carinata HOM05D007344 ORTHO05D009010 3.1e-24 116.3 222 37.8
C07p16850 Brassica napus HOM05D007344 ORTHO05D009010 3.1e-24 116.3 222 37.8
BolC7t42191H Brassica oleracea HOM05D007344 ORTHO05D009010 6.8e-24 115.2 222 37.8
C06p46470 Brassica napus HOM05D007344 ORTHO05D009010 2.0e-23 113.6 229 38.4
CARHR027960 Cardamine hirsuta HOM05D007344 ORTHO05D009010 5.8e-23 112.1 237 36.3
BcaC08g46684 Brassica carinata HOM05D007344 ORTHO05D032659 1.7e-22 110.5 211 37.9
C06p46640 Brassica napus HOM05D007344 ORTHO05D032659 1.7e-22 110.5 211 37.9
BolC6t39709H Brassica oleracea HOM05D007344 ORTHO05D032659 1.7e-22 110.5 211 37.9
BcaC03g15367 Brassica carinata HOM05D007344 ORTHO05D009010 2.2e-22 110.2 131 56.5
C02p29790 Brassica napus HOM05D007344 ORTHO05D009010 1.4e-21 107.5 131 55.7
BolC6t39703H Brassica oleracea HOM05D007344 ORTHO05D032082 1.2e-20 104.4 156 44.2
THA.LOC104813298 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 6.0e-20 102.1 232 37.9
A07p38390 Brassica napus HOM05D007344 ORTHO05D009010 7.8e-20 101.7 229 34.9
BcaC08g46681 Brassica carinata HOM05D007344 ORTHO05D032082 1.0e-19 101.3 126 50.0
C06p46580 Brassica napus HOM05D007344 ORTHO05D032082 1.0e-19 101.3 126 50.0
Thhalv10009709m.g Eutrema salsugineum HOM05D007344 ORTHO05D009010 3.0e-19 99.8 166 41.0
Aa31LG4G3590 Aethionema arabicum HOM05D000535 ORTHO05D009010 1.1e-18 97.8 234 35.0
C06p46530 Brassica napus HOM05D007344 ORTHO05D009010 3.3e-18 96.3 97 53.6
BcaC08g46675 Brassica carinata HOM05D007344 ORTHO05D009010 1.2e-15 87.8 92 57.6
C06p46510 Brassica napus HOM05D007344 ORTHO05D009010 1.2e-15 87.8 92 57.6
THA.LOC104814041 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 1.5e-15 87.4 219 32.9
THA.LOC104813935 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 4.4e-15 85.9 235 31.9
THA.LOC104812189 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 9.8e-15 84.7 209 30.6
THA.LOC104814040 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 9.8e-15 84.7 232 32.3
THA.LOC104812190 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 1.9e-13 80.5 211 31.3
Aa31sc276G90 Aethionema arabicum HOM05D007344 ORTHO05D009010 3.2e-13 79.7 165 36.4
Aa31LG6G10970 Aethionema arabicum HOM05D007344 ORTHO05D009010 4.1e-13 79.3 199 34.2
Sp1g24730 Schrenkiella parvula HOM05D007344 ORTHO05D009010 2.3e-11 73.6 220 30.9
FAN13G1742 Fragaria x ananassa HOM05D000535 ORTHO05D000427 8.6e-11 71.6 165 31.5
Lj5P167T32 Lonicera japonica HOM05D000535 ORTHO05D000427 8.6e-11 71.6 149 35.6
FvH4_5g18510 Fragaria vesca HOM05D000535 ORTHO05D000427 1.1e-10 71.2 146 32.9
FAN08G0118 Fragaria x ananassa HOM05D000535 ORTHO05D000427 2.5e-10 70.1 144 31.9
Cc04_g08350 Coffea canephora HOM05D000535 ORTHO05D000427 4.3e-10 69.3 162 32.1
FAN13G2343 Fragaria x ananassa HOM05D000535 ORTHO05D000427 5.6e-10 68.9 157 32.5
THA.LOC104812195 Tarenaya hassleriana HOM05D000535 ORTHO05D000427 5.6e-10 68.9 170 30.0
BcaC08g46680 Brassica carinata HOM05D007344 ORTHO05D009010 7.3e-10 68.6 79 54.4
PGSC0003DMG400027053 Solanum tuberosum HOM05D000535 ORTHO05D000427 9.5e-10 68.2 148 31.8
C06p46560 Brassica napus HOM05D007344 ORTHO05D041415 1.2e-09 67.8 65 60.0
BolC6t39701H Brassica oleracea HOM05D007344 ORTHO05D041415 1.2e-09 67.8 65 60.0
FvH4_5g18500 Fragaria vesca HOM05D000535 ORTHO05D000427 2.1e-09 67.0 156 30.8
TWI12G0051 Tripterygium wilfordii HOM05D000535 ORTHO05D000427 2.8e-09 66.6 169 33.1
FAN18G1447 Fragaria x ananassa HOM05D002264 ORTHO05D000427 3.6e-09 66.2 156 30.8
Oeu018758.1 Olea europaea HOM05D000535 ORTHO05D000427 3.6e-09 66.2 158 30.4
SalBow5G3210 Salvia bowleyana HOM05D000535 ORTHO05D000427 3.6e-09 66.2 154 33.8
CAN.G65.71 Capsicum annuum HOM05D000535 ORTHO05D000427 4.7e-09 65.9 143 32.9
Prupe.5G074500 Prunus persica HOM05D000535 ORTHO05D000427 8.1e-09 65.1 155 31.6
FAN04G0905 Fragaria x ananassa HOM05D002264 ORTHO05D002413 1.4e-08 64.3 157 31.8
PSO170G2432 Papaver somniferum HOM05D000535 ORTHO05D000427 1.4e-08 64.3 177 29.4
Lj2P607T10 Lonicera japonica HOM05D000535 ORTHO05D000427 2.3e-08 63.5 121 35.5
EL10Ac3g06699 Beta vulgaris HOM05D009425 ORTHO05D000427 3.1e-08 63.2 195 30.3
Peaxi162Scf00643g00055 Petunia axillaris HOM05D000535 ORTHO05D000427 4.0e-08 62.8 149 31.5
ClCG01G014760 Citrullus lanatus HOM05D000535 ORTHO05D000427 5.2e-08 62.4 161 29.8
Hma1.2p1_0816F.1_g222920 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 1.2e-07 61.2 138 34.8
TWI15G0556 Tripterygium wilfordii HOM05D000535 ORTHO05D000427 1.5e-07 60.8 146 32.9
Nitab4.5_0000339g0140 Nicotiana tabacum HOM05D000535 ORTHO05D000427 2.0e-07 60.5 143 32.9
PSO017G0167 Papaver somniferum HOM05D000535 ORTHO05D000427 2.0e-07 60.5 221 27.6
Oeu032705.1 Olea europaea HOM05D000535 ORTHO05D000427 2.6e-07 60.1 142 28.2
Sopen06g028550 Solanum pennellii HOM05D000535 ORTHO05D000427 2.6e-07 60.1 163 29.4
Dinv04609 Davidia involucrata HOM05D000535 ORTHO05D000427 3.4e-07 59.7 118 31.4
COL.COLO4_08723 Corchorus olitorius HOM05D000535 ORTHO05D000427 4.4e-07 59.3 133 30.8
MBI06_g27485_MAGBIO Magnolia biondii HOM05D000535 ORTHO05D000427 4.4e-07 59.3 132 33.3
AT1G17860 Arabidopsis thaliana HOM05D000535 ORTHO05D000427 7.6e-07 58.5 152 33.6
Medtr6g065460 Medicago truncatula HOM05D000535 ORTHO05D000427 7.6e-07 58.5 156 32.7
Hma1.2p1_0060F.1_g032810 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 9.9e-07 58.2 152 31.6
Solyc06g072230.1 Solanum lycopersicum HOM05D000535 ORTHO05D000427 9.9e-07 58.2 155 28.4
COL.COLO4_17376 Corchorus olitorius HOM05D000535 ORTHO05D000427 1.7e-06 57.4 167 29.9
Dinv10714 Davidia involucrata HOM05D000535 ORTHO05D000427 1.7e-06 57.4 136 28.7
PGSC0003DMG400027052 Solanum tuberosum HOM05D000535 ORTHO05D000427 1.7e-06 57.4 133 31.6
THA.LOC104811423 Tarenaya hassleriana HOM05D000535 ORTHO05D000427 1.7e-06 57.4 160 29.4
CSS0015346 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 2.2e-06 57.0 152 27.6
TAR374G0418 Trochodendron aralioides HOM05D000535 ORTHO05D000427 2.2e-06 57.0 135 31.1
TAR374G0927 Trochodendron aralioides HOM05D000535 ORTHO05D000427 2.2e-06 57.0 134 30.6
CSS0047130 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 3.7e-06 56.2 153 26.8
CAN.G65.72 Capsicum annuum HOM05D000535 ORTHO05D000427 4.9e-06 55.8 133 30.8
TPR.G5828 Trifolium pratense HOM05D000535 ORTHO05D000427 6.4e-06 55.5 139 33.1


User provided reference genes

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