Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1863 Capsella rubella HOM05D007473 ORTHO05D009459 3.0e-48 194.9 100 100.0
AT1G71865 Arabidopsis thaliana HOM05D007473 ORTHO05D009459 2.8e-46 188.3 100 96.0
AL2G31450 Arabidopsis lyrata HOM05D007473 ORTHO05D009459 6.2e-46 187.2 100 95.0
Sp5g26890 Schrenkiella parvula HOM05D007473 ORTHO05D009459 4.0e-45 184.5 105 92.4
SpUn0020_0080 Schrenkiella parvula HOM05D007473 ORTHO05D009459 4.0e-45 184.5 105 92.4
Thhalv10019351m.g Eutrema salsugineum HOM05D007473 ORTHO05D009459 1.5e-44 182.6 105 90.5
CARHR290890 Cardamine hirsuta HOM05D007473 ORTHO05D009459 1.3e-43 179.5 100 91.0
A07p38010 Brassica napus HOM05D007473 ORTHO05D009459 1.6e-41 172.6 106 87.7
BcaC08g46619 Brassica carinata HOM05D007473 ORTHO05D009459 4.6e-41 171.0 106 86.8
BraA07t31366Z Brassica rapa HOM05D007473 ORTHO05D009459 7.8e-41 170.2 106 86.8
BolC6t39645H Brassica oleracea HOM05D007473 ORTHO05D009459 3.0e-40 168.3 106 85.8
A07p30540 Brassica napus HOM05D007473 ORTHO05D009459 1.1e-39 166.4 105 86.7
BcaC08g45751 Brassica carinata HOM05D007473 ORTHO05D009459 9.5e-39 163.3 105 84.8
BolC6t38636H Brassica oleracea HOM05D007473 ORTHO05D009459 9.5e-39 163.3 105 84.8
BraA07t30689Z Brassica rapa HOM05D007473 ORTHO05D009459 2.1e-38 162.2 105 84.8
C06p35300 Brassica napus HOM05D007473 ORTHO05D009459 4.0e-37 157.9 101 85.1
Aa31LG4G8770 Aethionema arabicum HOM05D007473 ORTHO05D009459 4.9e-35 151.0 94 81.9
Atru.chr13.1869 Acer truncatum HOM05D007473 ORTHO05D009459 1.6e-30 136.0 101 70.3
Thecc.08G199100 Theobroma cacao HOM05D007473 ORTHO05D009459 1.6e-30 136.0 100 74.0
Duzib116G0725 Durio zibethinus HOM05D007473 ORTHO05D009459 2.8e-30 135.2 100 72.0
Cpa.g.sc66.113 Carica papaya HOM05D007473 ORTHO05D009459 1.8e-29 132.5 96 74.0
Gohir.A09G117600 Gossypium hirsutum HOM05D007473 ORTHO05D009459 6.9e-29 130.6 100 68.0
Gohir.D09G114400 Gossypium hirsutum HOM05D007473 ORTHO05D009459 6.9e-29 130.6 100 68.0
Gorai.006G132300 Gossypium raimondii HOM05D007473 ORTHO05D009459 6.9e-29 130.6 100 68.0
Duzib211G0408 Durio zibethinus HOM05D007473 ORTHO05D009459 1.2e-28 129.8 100 69.0
QL09p016421 Quercus lobata HOM05D007473 ORTHO05D009459 1.2e-28 129.8 97 68.0
QL02p034734 Quercus lobata HOM05D007473 ORTHO05D009459 3.4e-28 128.3 97 67.0
TWI59G1410 Tripterygium wilfordii HOM05D007473 ORTHO05D009459 3.4e-28 128.3 97 67.0
Hma1.2p1_0510F.1_g168850 Hydrangea macrophylla HOM05D007473 ORTHO05D009459 7.6e-28 127.1 99 66.7
Potri.013G116100 Populus trichocarpa HOM05D007473 ORTHO05D009459 9.9e-28 126.7 95 69.5
COL.COLO4_36790 Corchorus olitorius HOM05D007473 ORTHO05D009459 2.2e-27 125.6 100 67.0
Aqoxy5G02488 Aquilegia oxysepala HOM05D007473 ORTHO05D009459 4.9e-27 124.4 100 67.0
Ciclev10003143m.g Citrus clementina HOM05D007473 ORTHO05D009459 4.9e-27 124.4 101 69.3
SalBow7G0569 Salvia bowleyana HOM05D007473 ORTHO05D009459 8.4e-27 123.6 95 68.4
GSVIVG01036821001 Vitis vinifera HOM05D007473 ORTHO05D009459 8.4e-27 123.6 100 65.0
Manes.18G098100 Manihot esculenta HOM05D007473 ORTHO05D009459 1.4e-26 122.9 99 68.7
BcaB03g15623 Brassica carinata HOM05D007473 ORTHO05D009459 1.9e-26 122.5 107 72.0
Cfa018218 Carpinus fangiana HOM05D007473 ORTHO05D009459 2.4e-26 122.1 100 64.0
THA.LOC104800103 Tarenaya hassleriana HOM05D007473 ORTHO05D009459 3.2e-26 121.7 97 69.1
Ah.05g172820 Amaranthus hybridus HOM05D007473 ORTHO05D009459 4.2e-26 121.3 102 63.7
BcaC08g46617 Brassica carinata HOM05D007473 ORTHO05D009459 7.1e-26 120.6 107 67.3
Nitab4.5_0004159g0050 Nicotiana tabacum HOM05D007473 ORTHO05D009459 9.3e-26 120.2 99 65.7
Sabra19G0097100 Salix brachista HOM05D007473 ORTHO05D009459 9.3e-26 120.2 101 65.3
Nitab4.5_0000051g0010 Nicotiana tabacum HOM05D007473 ORTHO05D009459 1.2e-25 119.8 99 65.7
Sc23g0001050 Simmondsia chinensis HOM05D007473 ORTHO05D009459 1.2e-25 119.8 100 66.0
Manes.02G188900 Manihot esculenta HOM05D007473 ORTHO05D009459 1.6e-25 119.4 99 66.7
Haze_17885 Corylus avellana HOM05D007473 ORTHO05D009459 2.1e-25 119.0 97 62.9
Oeu054499.1 Olea europaea HOM05D007473 ORTHO05D009459 2.1e-25 119.0 99 63.6
AUR62004677 Chenopodium quinoa HOM05D000623 ORTHO05D007511 4.6e-25 117.9 100 65.0
MSTRG.25424 Avicennia marina HOM05D007473 ORTHO05D009459 6.0e-25 117.5 99 65.7
CiPaw.15G006600 Carya illinoinensis HOM05D007473 ORTHO05D009459 7.8e-25 117.1 98 61.2
Potri.019G086700 Populus trichocarpa HOM05D007473 ORTHO05D009459 7.8e-25 117.1 101 63.4
AUR62023594 Chenopodium quinoa HOM05D007473 ORTHO05D009459 1.0e-24 116.7 100 64.0
Prupe.8G051200 Prunus persica HOM05D007473 ORTHO05D009459 1.0e-24 116.7 97 63.9
Migut.C01206 Erythranthe guttata HOM05D007473 ORTHO05D009459 1.7e-24 115.9 95 66.3
SGA_v2.0_scaffold25G11079 Striga asiatica HOM05D007473 ORTHO05D009459 1.7e-24 115.9 94 67.0
Eucgr.F04148 Eucalyptus grandis HOM05D007473 ORTHO05D009459 3.9e-24 114.8 99 62.6
PGSC0003DMG400030214 Solanum tuberosum HOM05D007473 ORTHO05D009459 3.9e-24 114.8 100 66.0
Sed0021533 Sechium edule HOM05D007473 ORTHO05D009459 5.1e-24 114.4 98 61.2
Cc00_g18070 Coffea canephora HOM05D007473 ORTHO05D009459 6.6e-24 114.0 99 61.6
CsaV3_7G024330 Cucumis sativus L. HOM05D007473 ORTHO05D009459 6.6e-24 114.0 97 61.9
Solyc11g013850.2 Solanum lycopersicum HOM05D007473 ORTHO05D009459 6.6e-24 114.0 100 66.0
Sopen11g008770 Solanum pennellii HOM05D007473 ORTHO05D009459 6.6e-24 114.0 100 66.0
MD05G1038600 Malus domestica HOM05D007473 ORTHO05D009459 8.7e-24 113.6 97 64.9
TAR628G1168 Trochodendron aralioides HOM05D007473 ORTHO05D009459 8.7e-24 113.6 101 62.4
ClCG09G010330 Citrullus lanatus HOM05D007473 ORTHO05D009459 1.1e-23 113.2 97 61.9
VMungo0464G1647 Vigna mungo HOM05D007473 ORTHO05D009459 1.5e-23 112.8 102 62.7
Glyma.02G075700 Glycine max HOM05D007473 ORTHO05D009459 1.9e-23 112.5 104 60.6
MELO3C023649.2 Cucumis melo HOM05D007473 ORTHO05D009459 2.5e-23 112.1 97 60.8
Nn1g08531 Nelumbo nucifera HOM05D007473 ORTHO05D009459 2.5e-23 112.1 100 62.0
Glyma.16G157600 Glycine max HOM05D007473 ORTHO05D009459 3.3e-23 111.7 104 60.6
MD10G1044400 Malus domestica HOM05D007473 ORTHO05D009459 5.6e-23 110.9 96 64.6
Phvul.004G085900 Phaseolus vulgaris HOM05D007473 ORTHO05D009459 5.6e-23 110.9 101 62.4
CANSAT25G2275 Cannabis sativa HOM05D007473 ORTHO05D009459 9.6e-23 110.2 97 66.0
Lalb_Chr19g0129841 Lupinus albus HOM05D007473 ORTHO05D009459 1.3e-22 109.8 103 59.2
CSS0009978 Camellia sinensis var. sinensis HOM05D007473 ORTHO05D009459 2.8e-22 108.6 87 64.4
Lalb_Chr01g0009921 Lupinus albus HOM05D007473 ORTHO05D009459 2.8e-22 108.6 103 59.2
Medtr1g097080 Medicago truncatula HOM05D007473 ORTHO05D009459 3.6e-22 108.2 98 66.3
TPR.G30581 Trifolium pratense HOM05D007473 ORTHO05D009459 6.2e-22 107.5 100 64.0
Aa31LG7G6620 Aethionema arabicum HOM05D007473 ORTHO05D009459 1.1e-21 106.7 78 76.9
EL10Ac3g06462 Beta vulgaris HOM05D007473 ORTHO05D009459 1.1e-21 106.7 94 62.8
Lj5g0014701 Lotus japonicus HOM05D007473 ORTHO05D009459 1.4e-21 106.3 101 61.4
Oeu017869.1 Olea europaea HOM05D007473 ORTHO05D009459 1.8e-21 105.9 99 62.6
Os01g0871350 Oryza sativa ssp. japonica HOM05D007473 ORTHO05D009459 1.8e-21 105.9 97 58.8
Sabra13G0098400 Salix brachista HOM05D007473 ORTHO05D009459 2.4e-21 105.5 90 63.3
ATR0584G170 Amborella trichopoda HOM05D007473 ORTHO05D009459 1.5e-20 102.8 97 56.7
Zm00001eb289250 Zea mays HOM05D007473 ORTHO05D009459 2.6e-20 102.1 98 57.1
Psat6g188360 Pisum sativum HOM05D007473 ORTHO05D009459 3.4e-20 101.7 100 63.0
EL10Ac8g20095 Beta vulgaris HOM05D007473 ORTHO05D009459 1.3e-19 99.8 94 59.6
Peaxi162Scf00476g00621 Petunia axillaris HOM05D007473 ORTHO05D009459 1.3e-19 99.8 90 62.2
PSO017G2761 Papaver somniferum HOM05D007473 ORTHO05D009459 1.7e-19 99.4 99 56.6
EL10Ac1g01496 Beta vulgaris HOM05D007473 ORTHO05D009459 6.4e-19 97.4 94 58.5
SEGI_38346 Sequoiadendron giganteum HOM05D007473 ORTHO05D009459 4.3e-15 84.7 100 51.0
EL10Ac8g20080 Beta vulgaris HOM05D007473 ORTHO05D009459 5.6e-15 84.3 89 57.3
Hund27069 Selenicereus undatus HOM05D007473 ORTHO05D009459 1.6e-14 82.8 82 56.1
Zm00001eb348670 Zea mays HOM05D007473 ORTHO05D009459 4.8e-14 81.3 86 55.8
EL10Ac7g17167 Beta vulgaris HOM05D007473 ORTHO05D009459 4.9e-11 71.2 65 61.5
EL10Ac4g08661 Beta vulgaris HOM05D007473 ORTHO05D009459 2.5e-10 68.9 92 46.7
EL10Ac8g20008 Beta vulgaris HOM05D007473 ORTHO05D009459 7.1e-10 67.4 65 60.0
Mapoly0047s0010 Marchantia polymorpha HOM05D026638 ORTHO05D030127 6.2e-06 54.3 116 35.3


User provided reference genes

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