Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 7.4e-200 700.3 343 100.0
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 9.8e-176 620.2 341 88.6
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 1.2e-170 603.2 341 87.4
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 1.8e-169 599.4 342 86.5
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 3.0e-169 598.6 343 85.1
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 3.0e-169 598.6 343 85.1
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 1.6e-162 576.2 345 82.0
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 8.0e-162 573.9 339 82.3
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 1.5e-155 553.1 344 80.5
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 5.6e-155 551.2 344 80.2
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 7.3e-155 550.8 344 80.2
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 3.6e-154 548.5 345 80.0
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 6.2e-154 547.7 328 79.0
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 1.4e-153 546.6 345 79.4
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 1.1e-145 520.4 340 73.2
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 2.0e-144 516.2 337 71.5
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 1.7e-143 513.1 337 71.2
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 3.3e-139 498.8 340 71.5
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 1.2e-138 496.9 337 69.1
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.1e-138 496.1 321 72.9
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 1.8e-137 493.0 324 70.7
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 2.4e-137 492.7 273 88.3
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 6.9e-137 491.1 321 73.8
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 1.5e-136 490.0 319 71.2
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 3.4e-136 488.8 312 73.1
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 3.4e-136 488.8 319 72.1
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 5.8e-136 488.0 343 68.8
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 7.6e-136 487.6 321 72.0
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 1.4e-134 483.4 321 70.4
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 1.2e-133 480.3 311 70.4
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.6e-133 478.4 327 68.2
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 6.0e-133 478.0 323 70.0
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 7.8e-133 477.6 326 68.4
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 7.8e-133 477.6 326 68.7
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 1.0e-132 477.2 344 68.0
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 1.7e-132 476.5 317 71.6
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 5.1e-132 474.9 341 67.7
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.3e-131 471.9 326 67.8
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 5.6e-131 471.5 340 66.2
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 1.6e-130 469.9 310 70.6
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 1.1e-129 467.2 377 62.6
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 1.1e-129 467.2 324 66.4
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 1.4e-129 466.8 357 65.8
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 1.4e-129 466.8 315 67.0
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.5e-128 463.4 329 67.8
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 2.0e-128 463.0 331 64.0
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 3.4e-128 462.2 336 65.2
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 5.8e-128 461.5 334 67.7
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 9.9e-128 460.7 332 65.7
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 9.9e-128 460.7 380 60.8
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 9.9e-128 460.7 326 65.6
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 1.3e-127 460.3 356 62.6
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 1.3e-127 460.3 307 68.7
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.3e-127 460.3 327 66.7
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 2.9e-127 459.1 353 64.6
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 6.4e-127 458.0 307 68.7
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 6.4e-127 458.0 324 67.6
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 8.4e-127 457.6 327 65.7
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 8.4e-127 457.6 325 68.6
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 3.2e-126 455.7 329 64.7
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 4.2e-126 455.3 293 72.0
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 5.4e-126 454.9 325 68.0
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 7.1e-126 454.5 333 68.2
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 2.1e-125 453.0 335 65.4
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 2.1e-125 453.0 332 65.4
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 3.0e-124 449.1 295 71.2
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 2.5e-123 446.0 332 63.6
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 1.6e-122 443.4 312 67.3
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.1e-122 443.0 342 63.2
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.1e-122 443.0 342 63.2
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 6.9e-121 438.0 307 69.4
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 9.0e-121 437.6 322 67.1
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 9.0e-121 437.6 334 66.2
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 4.5e-120 435.3 334 65.6
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 7.6e-120 434.5 322 64.6
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 2.2e-119 433.0 290 69.7
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 2.9e-119 432.6 343 62.7
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 2.9e-119 432.6 341 63.0
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 2.5e-118 429.5 322 64.6
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 4.2e-118 428.7 307 66.4
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 5.5e-118 428.3 309 64.1
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.6e-117 426.8 326 63.2
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 4.6e-117 425.2 313 65.8
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 3.9e-116 422.2 333 61.6
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 9.6e-115 417.5 306 64.4
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 6.2e-114 414.8 383 56.4
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.8e-113 413.3 277 71.8
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 8.4e-111 404.4 314 61.5
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 5.5e-110 401.7 269 72.1
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 1.6e-109 400.2 271 69.0
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 2.1e-109 399.8 263 70.3
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 3.5e-109 399.1 344 58.1
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 7.4e-107 391.3 300 61.7
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 2.0e-104 383.3 252 70.2
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 3.4e-104 382.5 347 55.0
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 2.9e-103 379.4 338 55.6
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 5.5e-102 375.2 252 71.8
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 2.7e-101 372.9 320 57.5
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 6.1e-101 371.7 341 57.2
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 7.9e-101 371.3 326 56.7
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 8.8e-100 367.9 211 80.1
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 3.1e-97 359.4 293 60.4
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 1.5e-96 357.1 321 55.8
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 4.5e-96 355.5 311 58.5
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 1.3e-95 354.0 327 54.7
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 1.3e-95 354.0 311 58.2
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 8.5e-95 351.3 397 49.1
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 1.9e-94 350.1 227 71.8
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.9e-94 350.1 322 58.7
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.5e-94 348.6 313 58.5
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 1.2e-93 347.4 346 56.1
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.6e-93 347.1 326 54.3
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 3.3e-91 339.3 313 53.7
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.4e-91 339.0 315 57.5
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.7e-90 337.0 245 63.3
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 2.8e-90 336.3 269 59.5
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 1.1e-89 334.3 354 54.0
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 2.9e-87 326.2 318 52.8
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 3.2e-86 322.8 343 52.5
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.6e-85 320.5 282 57.1
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 8.0e-85 318.2 386 46.6
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 4.4e-83 312.4 277 57.8
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.0e-79 301.2 250 58.0
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 3.6e-69 266.2 301 46.8
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 2.3e-68 263.5 303 43.9
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 6.3e-66 255.4 308 43.5
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 5.9e-64 248.8 346 41.6
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 5.2e-60 235.7 306 42.2
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.5e-59 234.2 242 52.5
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 7.5e-59 231.9 152 71.7
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 9.8e-59 231.5 139 75.5
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 8.0e-53 211.8 254 43.3
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 7.5e-51 205.3 113 82.3
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 9.8e-51 204.9 149 66.4
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 8.3e-50 201.8 253 39.9
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 2.7e-48 196.8 203 45.8
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 2.7e-48 196.8 319 38.6
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.0e-47 194.9 160 56.2
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.7e-47 194.1 277 39.4
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 5.8e-43 179.1 247 40.1
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 1.2e-37 161.4 227 40.1
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 3.6e-37 159.8 101 71.3
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 7.1e-33 145.6 96 77.1
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 9.2e-33 145.2 254 33.1
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 1.0e-31 141.7 245 33.1
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 2.5e-30 137.1 393 28.5
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.1e-28 130.2 229 33.2
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 6.8e-28 129.0 271 32.1
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 9.3e-25 118.6 305 31.8
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 4.6e-24 116.3 115 43.5
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 1.0e-23 115.2 113 42.5
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 1.3e-23 114.8 73 75.3
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 1.3e-23 114.8 73 75.3
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 3.0e-23 113.6 73 74.0
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 6.6e-23 112.5 153 41.2
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 3.3e-22 110.2 84 60.7
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 9.6e-22 108.6 153 37.3
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 6.2e-21 105.9 291 26.1
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 6.2e-21 105.9 212 33.0
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 9.3e-17 92.0 60 71.7
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.2e-16 91.7 251 29.9
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 1.4e-12 78.2 80 48.8
Glyma.20G173800 Glycine max HOM05D004272 ORTHO05D005020 4.5e-11 73.2 125 37.6


User provided reference genes

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