Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 3.4e-299 1030.8 492 100.0
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 2.9e-274 948.0 492 90.9
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 2.6e-270 934.9 492 89.4
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 1.7e-266 922.2 492 88.2
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 8.3e-261 903.3 493 88.0
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 2.4e-260 901.7 493 87.6
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 5.4e-260 900.6 490 84.7
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 2.7e-259 898.3 493 87.0
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 6.6e-258 893.6 509 85.1
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 1.4e-236 822.8 427 90.6
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 2.5e-217 758.8 401 87.8
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 2.9e-197 692.2 490 65.9
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 4.8e-192 674.9 485 65.2
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 1.9e-188 662.9 483 64.4
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 3.2e-188 662.1 492 63.4
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 3.9e-186 655.2 545 57.8
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 3.3e-185 652.1 493 63.9
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 4.4e-185 651.7 453 67.3
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 4.4e-185 651.7 461 65.9
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 2.2e-184 649.4 485 64.7
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 2.8e-184 649.0 450 68.4
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 1.4e-183 646.7 427 68.6
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 2.6e-182 642.5 470 64.3
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 2.6e-182 642.5 493 61.7
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 5.9e-182 641.3 496 63.3
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 1.0e-181 640.6 488 61.7
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 8.5e-181 637.5 430 67.9
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 1.4e-180 636.7 448 65.0
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 1.4e-180 636.7 477 63.9
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 1.4e-180 636.7 464 64.2
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 1.9e-180 636.3 513 60.4
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 7.2e-180 634.4 487 61.8
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 2.1e-179 632.9 542 57.7
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 4.7e-179 631.7 481 63.4
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 6.1e-179 631.3 489 61.1
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 1.4e-178 630.2 466 63.1
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 1.8e-178 629.8 477 63.3
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 1.8e-178 629.8 461 64.4
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 3.0e-178 629.0 419 70.6
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 3.9e-178 628.6 497 60.4
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 5.2e-178 628.2 459 65.1
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 6.7e-178 627.9 438 66.7
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 4.4e-177 625.2 485 61.4
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 4.4e-177 625.2 477 63.7
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 5.7e-177 624.8 472 62.3
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 7.4e-177 624.4 466 63.1
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 1.7e-176 623.2 455 64.2
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 2.2e-176 622.9 490 61.0
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 6.3e-176 621.3 441 65.3
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 1.1e-175 620.5 501 60.9
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 1.1e-175 620.5 470 61.9
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 1.4e-175 620.2 483 62.9
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 4.1e-175 618.6 447 65.5
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 9.1e-175 617.5 491 59.9
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 2.6e-174 615.9 491 60.3
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 1.7e-173 613.2 483 60.0
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 2.2e-173 612.8 452 64.2
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 2.2e-173 612.8 476 60.9
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 2.2e-173 612.8 486 61.1
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 5.0e-173 611.7 485 59.6
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.7e-171 605.9 476 62.2
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 1.0e-170 604.0 470 59.1
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 3.0e-170 602.4 476 62.0
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 5.2e-170 601.7 476 61.8
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 2.0e-169 599.7 496 59.1
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 7.5e-169 597.8 480 59.8
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 6.3e-168 594.7 461 61.2
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 2.7e-166 589.3 493 59.2
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 2.2e-165 586.3 487 59.1
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 1.9e-164 583.2 376 70.2
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 7.2e-164 581.3 506 57.3
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 6.8e-162 574.7 487 56.5
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 6.8e-162 574.7 419 63.5
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 1.5e-161 573.5 405 65.2
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 1.5e-161 573.5 480 56.9
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 3.4e-161 572.4 396 66.7
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 1.3e-160 570.5 405 64.9
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 3.5e-158 562.4 381 68.8
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 3.6e-155 552.4 469 57.1
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.2e-153 547.4 500 56.2
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 1.5e-153 547.0 439 60.4
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 7.5e-153 544.7 400 63.5
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 1.8e-151 540.0 459 56.6
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 4.1e-151 538.9 392 63.3
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 5.4e-151 538.5 401 62.3
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 1.8e-146 523.5 491 54.4
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 4.3e-140 502.3 505 51.5
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 5.6e-140 501.9 336 69.0
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.6e-139 500.4 500 53.4
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 1.4e-135 487.3 394 59.1
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 7.8e-134 481.5 542 49.6
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 1.0e-133 481.1 425 54.4
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 1.7e-133 480.3 309 68.3
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 2.3e-133 479.9 360 63.3
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 7.3e-132 474.9 370 57.8
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 5.2e-130 468.8 327 66.7
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 6.4e-128 461.8 243 89.7
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 7.1e-127 458.4 243 88.9
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 6.6e-125 451.8 357 56.6
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 4.7e-123 445.7 334 59.6
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 1.4e-122 444.1 394 56.1
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 1.6e-118 430.6 382 57.3
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 7.3e-108 395.2 268 70.5
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 3.8e-104 382.9 241 79.7
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 4.2e-103 379.4 234 80.3
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 1.3e-93 347.8 246 68.7
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 5.1e-93 345.9 371 47.7
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 6.7e-93 345.5 246 68.3
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 3.1e-90 336.7 336 47.0
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 2.0e-89 334.0 329 50.2
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 7.9e-86 322.0 238 62.6
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 7.9e-86 322.0 238 62.6
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 2.2e-83 313.9 299 50.2
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 4.1e-82 309.7 173 78.6
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 4.2e-71 273.1 385 37.9
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 6.5e-64 249.2 328 41.2
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 9.1e-58 228.8 188 59.6
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 2.5e-55 220.7 191 57.1
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 7.2e-55 219.2 226 50.0
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 9.1e-42 175.6 108 70.4
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 8.6e-40 169.1 382 31.7
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 2.3e-37 161.0 104 66.3
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 1.9e-31 141.4 342 31.6
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 1.6e-30 138.3 74 78.4
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 7.5e-28 129.4 73 75.3
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 3.0e-24 117.5 367 27.5
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 1.4e-21 108.6 55 81.8
MD10G1034600 Malus domestica HOM05D005921 ORTHO05D007374 5.2e-21 106.7 95 52.6
Sabra02G0051300 Salix brachista HOM05D005921 ORTHO05D007374 9.5e-15 85.9 112 42.0
CBR_g24397 Chara braunii HOM05D005921 ORTHO05D132278 1.6e-06 58.5 84 31.0


User provided reference genes

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