Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1765 Capsella rubella HOM05D005158 ORTHO05D005510 2.5e-256 888.3 448 100.0
TAR374G1701 Trochodendron aralioides HOM05D005158 ORTHO05D005510 3.4e-152 542.3 367 72.8
Duzib251G0375 Durio zibethinus HOM05D005158 ORTHO05D005510 2.4e-145 519.6 438 61.9
Potri.010G111100 Populus trichocarpa HOM05D005158 ORTHO05D005510 2.6e-144 516.2 428 63.3
Sabra10G0081500 Salix brachista HOM05D005158 ORTHO05D005510 4.4e-144 515.4 388 68.0
Prupe.1G327200 Prunus persica HOM05D005158 ORTHO05D005510 6.4e-143 511.5 365 70.1
Nn4g24217 Nelumbo nucifera HOM05D005158 ORTHO05D005510 4.6e-141 505.4 367 66.2
Manes.17G078700 Manihot esculenta HOM05D005158 ORTHO05D005510 6.0e-141 505.0 371 69.3
CSS0029988 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 8.7e-140 501.1 377 67.1
QL03p033448 Quercus lobata HOM05D005158 ORTHO05D005510 8.7e-140 501.1 381 66.9
HanXRQChr08g0212241 Helianthus annuus HOM05D005158 ORTHO05D005510 1.1e-139 500.7 393 64.6
Ciclev10015117m.g Citrus clementina HOM05D005158 ORTHO05D005510 2.5e-139 499.6 363 70.5
GSVIVG01011734001 Vitis vinifera HOM05D005158 ORTHO05D005510 8.1e-138 494.6 362 68.8
FAN17G2123 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.1e-137 494.2 359 67.1
RcHm_v2.0_Chr4g0441611 Rosa chinensis HOM05D005158 ORTHO05D005510 1.8e-137 493.4 372 66.1
PGR119G0382 Punica granatum HOM05D005158 ORTHO05D005510 2.4e-137 493.0 375 65.6
Actinidia36249 Actinidia chinensis HOM05D005158 ORTHO05D005510 4.0e-137 492.3 366 67.5
COL.COLO4_13149 Corchorus olitorius HOM05D005158 ORTHO05D005510 4.0e-137 492.3 419 61.3
FvH4_4g32690 Fragaria vesca HOM05D005158 ORTHO05D005510 6.9e-137 491.5 372 65.6
MD16G1026300 Malus domestica HOM05D005158 ORTHO05D005510 1.5e-136 490.3 359 67.1
CANSAT64G2776 Cannabis sativa HOM05D005158 ORTHO05D005510 2.0e-136 490.0 387 64.3
Lsat_1_v5_gn_8_45001 Lactuca sativa HOM05D005158 ORTHO05D005510 4.4e-136 488.8 371 67.4
FAN12G3950 Fragaria x ananassa HOM05D005158 ORTHO05D005510 9.9e-136 487.6 359 66.6
Dinv28033 Davidia involucrata HOM05D005158 ORTHO05D005510 4.9e-135 485.3 306 76.5
QL10p028515 Quercus lobata HOM05D005158 ORTHO05D005510 8.4e-135 484.6 416 60.3
vmacro00408 Vaccinium macrocarpon HOM05D005158 ORTHO05D005510 4.6e-133 478.8 436 58.3
RcHm_v2.0_Chr7g0178481 Rosa chinensis HOM05D005158 ORTHO05D005510 1.5e-131 473.8 357 66.4
Eucgr.G02179 Eucalyptus grandis HOM05D005158 ORTHO05D005510 3.3e-131 472.6 356 65.2
Phvul.003G032200 Phaseolus vulgaris HOM05D005158 ORTHO05D005510 3.3e-131 472.6 369 64.8
CAN.G236.18 Capsicum annuum HOM05D005158 ORTHO05D005510 4.8e-130 468.8 431 57.3
Ciclev10008271m.g Citrus clementina HOM05D005158 ORTHO05D005510 6.2e-130 468.4 399 60.4
MD06G1226600 Malus domestica HOM05D005158 ORTHO05D005510 1.8e-129 466.8 355 64.5
PSO017G1154 Papaver somniferum HOM05D005158 ORTHO05D005510 4.0e-129 465.7 384 62.2
Sc14g0006290 Simmondsia chinensis HOM05D005158 ORTHO05D005510 6.9e-129 464.9 357 64.1
GSVIVG01008427001 Vitis vinifera HOM05D005158 ORTHO05D005510 6.9e-129 464.9 358 65.6
COL.COLO4_37683 Corchorus olitorius HOM05D000282 ORTHO05D005510 1.2e-128 464.2 353 65.2
Haze_10977 Corylus avellana HOM05D005158 ORTHO05D005510 1.2e-128 464.2 424 59.2
Aqoxy3G00071 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 1.5e-128 463.8 381 61.4
Sc14g0007050 Simmondsia chinensis HOM05D005158 ORTHO05D005510 2.0e-128 463.4 357 63.9
Dinv27619 Davidia involucrata HOM05D005158 ORTHO05D005510 4.5e-128 462.2 364 64.0
Sopen05g014580 Solanum pennellii HOM05D005158 ORTHO05D005510 4.5e-128 462.2 366 65.0
FAN04G1228 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.3e-127 460.7 358 64.5
SalBow8G1650 Salvia bowleyana HOM05D005158 ORTHO05D005510 1.3e-127 460.7 416 58.7
PSO478G5200 Papaver somniferum HOM05D005158 ORTHO05D005510 1.7e-127 460.3 374 62.6
Cc11_g08400 Coffea canephora HOM05D005158 ORTHO05D005510 6.4e-127 458.4 359 64.6
SalBow8G5629 Salvia bowleyana HOM05D005158 ORTHO05D005510 6.4e-127 458.4 416 58.2
Thecc.03G054800 Theobroma cacao HOM05D005158 ORTHO05D005510 6.4e-127 458.4 352 65.3
Cfa008628 Carpinus fangiana HOM05D005158 ORTHO05D005510 1.1e-126 457.6 374 64.4
CiPaw.05G195800 Carya illinoinensis HOM05D005158 ORTHO05D005510 4.2e-126 455.7 319 69.9
MELO3C014995.2 Cucumis melo HOM05D005158 ORTHO05D005510 4.2e-126 455.7 377 61.0
Cc11_g08410 Coffea canephora HOM05D005158 ORTHO05D005510 9.3e-126 454.5 359 63.2
CSS0001942 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.6e-125 453.8 326 67.8
HanXRQChr08g0212251 Helianthus annuus HOM05D005158 ORTHO05D005510 2.7e-125 453.0 397 58.4
Migut.L00352 Erythranthe guttata HOM05D005158 ORTHO05D005510 3.5e-125 452.6 377 62.1
FvH4_5g17290 Fragaria vesca HOM05D005158 ORTHO05D005510 3.5e-125 452.6 358 64.2
Sed0000270 Sechium edule HOM05D005158 ORTHO05D005510 3.5e-125 452.6 364 62.4
FAN22G1395 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.0e-124 451.1 359 63.5
MSTRG.13599 Avicennia marina HOM05D005158 ORTHO05D005510 2.3e-124 449.9 318 68.2
Haze_18844 Corylus avellana HOM05D005158 ORTHO05D005510 2.3e-124 449.9 419 56.3
ClCG07G007220 Citrullus lanatus HOM05D005158 ORTHO05D005510 5.1e-124 448.7 365 62.2
CiPaw.15G143000 Carya illinoinensis HOM05D005158 ORTHO05D005510 1.9e-123 446.8 358 62.8
CsaV3_5G015040 Cucumis sativus L. HOM05D005158 ORTHO05D005510 2.5e-123 446.4 377 60.2
Lalb_Chr17g0338591 Lupinus albus HOM05D005158 ORTHO05D005510 3.3e-123 446.0 356 63.5
Sabra15G0037900 Salix brachista HOM05D005158 ORTHO05D005510 4.3e-123 445.7 345 64.1
MSTRG.4576 Avicennia marina HOM05D005158 ORTHO05D005510 4.8e-122 442.2 420 55.2
FvH4_5g11940 Fragaria vesca HOM05D005158 ORTHO05D005510 8.1e-122 441.4 343 64.4
Lj2g0016958 Lotus japonicus HOM05D005158 ORTHO05D005510 1.1e-121 441.0 356 64.0
Duzib205G1388 Durio zibethinus HOM05D005158 ORTHO05D005510 1.4e-121 440.7 415 55.2
Lj6A744G51 Lonicera japonica HOM05D005158 ORTHO05D005510 3.1e-121 439.5 325 68.6
TWI75G0580 Tripterygium wilfordii HOM05D005158 ORTHO05D005510 5.3e-121 438.7 285 74.0
Ah.02g127790 Amaranthus hybridus HOM05D005158 ORTHO05D005510 9.0e-121 438.0 314 68.2
FAN18G4517 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.2e-120 437.6 351 63.2
SGA_v2.0_scaffold234G43623 Striga asiatica HOM05D005158 ORTHO05D005510 2.0e-120 436.8 401 58.4
AUR62014187 Chenopodium quinoa HOM05D005158 ORTHO05D005510 2.6e-120 436.4 359 60.7
CSS0029687 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.7e-119 433.7 346 65.0
FAN18G3280 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.7e-119 433.7 360 61.7
Atru.chr9.1740 Acer truncatum HOM05D005158 ORTHO05D005510 3.8e-119 432.6 321 67.6
FAN18G0401 Fragaria x ananassa HOM05D005158 ORTHO05D005510 8.4e-119 431.4 300 69.3
Oeu046166.1 Olea europaea HOM05D005158 ORTHO05D005510 1.9e-118 430.3 352 61.1
CDE05G1850 Ceratophyllum demersum HOM05D005158 ORTHO05D005510 7.9e-117 424.9 351 60.1
ATR0665G468 Amborella trichopoda HOM05D005158 ORTHO05D005510 3.9e-116 422.5 358 59.2
ECA233G1067 Erigeron canadensis HOM05D005158 ORTHO05D005510 1.3e-114 417.5 315 65.1
Migut.D01553 Erythranthe guttata HOM05D005158 ORTHO05D005510 1.6e-114 417.2 348 60.6
FAN13G1699 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.7e-114 416.0 373 59.0
Cc04_g06310 Coffea canephora HOM05D005158 ORTHO05D005510 4.8e-114 415.6 375 58.9
FAN08G3331 Fragaria x ananassa HOM05D005158 ORTHO05D005510 4.0e-113 412.5 328 64.0
SalBow1G1317 Salvia bowleyana HOM05D005158 ORTHO05D005510 4.8e-106 389.0 298 66.1
Rhsim09G0065900 Rhododendron simsii HOM05D005158 ORTHO05D005510 1.1e-105 387.9 329 62.3
AUR62039517 Chenopodium quinoa HOM05D005158 ORTHO05D005510 4.1e-105 386.0 382 53.4
Rhsim09G0065800 Rhododendron simsii HOM05D005158 ORTHO05D005510 6.9e-105 385.2 330 62.1
Os03g0707200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 5.9e-104 382.1 294 62.2
VMungo1215G0718 Vigna mungo HOM05D005158 ORTHO05D005510 1.7e-103 380.6 516 45.2
Hund20682 Selenicereus undatus HOM05D005158 ORTHO05D005510 1.4e-102 377.5 272 65.4
CSS0046275 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 6.7e-100 368.6 331 58.6
Peaxi162Scf00159g01112 Petunia axillaris HOM05D005158 ORTHO05D005510 2.2e-98 363.6 272 65.8
FAN13G2578 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.1e-91 341.3 373 52.0
Dinv14415 Davidia involucrata HOM05D005158 ORTHO05D005510 2.2e-87 327.0 379 52.0
Prupe.5G232900 Prunus persica HOM05D005158 ORTHO05D005510 7.0e-81 305.4 239 64.4
HPP92_016306 Vanilla planifolia HOM05D005158 ORTHO05D005510 2.6e-80 303.5 332 51.2
Solyc05g017900.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 3.5e-80 303.1 240 66.7
AUR62014186 Chenopodium quinoa HOM05D005158 ORTHO05D005510 1.2e-69 268.1 267 52.8
Pp3c5_19920 Physcomitrium patens HOM05D005158 ORTHO05D005510 8.0e-69 265.4 293 44.7
Potri.008G130950 Populus trichocarpa HOM05D005158 ORTHO05D005510 1.5e-67 261.2 280 52.1
Thecc.02G284700 Theobroma cacao HOM05D005158 ORTHO05D005510 4.4e-67 259.6 210 61.4
HPP92_016287 Vanilla planifolia HOM05D005158 ORTHO05D005510 1.4e-65 254.6 252 54.0
Zm00001eb054470 Zea mays HOM05D005158 ORTHO05D005510 3.6e-61 240.0 235 53.6
Oeu003374.1 Olea europaea HOM05D005158 ORTHO05D005510 2.0e-59 234.2 173 65.9
FAN07G0555 Fragaria x ananassa HOM05D005158 ORTHO05D005510 4.9e-58 229.6 155 70.3
Oeu014055.2 Olea europaea HOM05D005158 ORTHO05D005510 1.1e-54 218.4 192 56.2
AagrBONN_evm.TU.Sc2ySwM_344.3657 Anthoceros agrestis HOM05D005158 ORTHO05D005510 2.8e-53 213.8 260 46.5
SEGI_17459 Sequoiadendron giganteum HOM05D005158 ORTHO05D005510 1.8e-52 211.1 182 57.7
PRCOL_00003969 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 2.6e-51 207.2 296 41.9
Cpa.g.sc570.2 Carica papaya HOM05D005158 ORTHO05D005510 4.9e-50 203.0 203 53.7
Manes.06G007150 Manihot esculenta HOM05D005158 ORTHO05D005510 1.6e-40 171.4 199 50.8
HPP92_027195 Vanilla planifolia HOM05D005158 ORTHO05D005510 1.9e-33 147.9 189 46.0
HanXRQChr08g0212291 Helianthus annuus HOM05D005158 ORTHO05D005510 4.1e-33 146.7 111 63.1
Zm00001eb280420 Zea mays HOM05D005158 ORTHO05D005510 7.8e-32 142.5 155 47.7
Duzib068G0898 Durio zibethinus HOM05D005158 ORTHO05D005510 1.3e-31 141.7 168 47.6
Gohir.D02G122150 Gossypium hirsutum HOM05D005158 ORTHO05D005510 7.3e-30 136.0 193 44.0
TAR622G0559 Trochodendron aralioides HOM05D005158 ORTHO05D005510 1.1e-28 132.1 231 39.0
C06p44960 Brassica napus HOM05D005158 ORTHO05D005510 1.7e-26 124.8 107 62.6
DCAR_007307 Daucus carota HOM05D005158 ORTHO05D005510 8.4e-26 122.5 103 61.2
PGR044G0956 Punica granatum HOM05D005158 ORTHO05D005510 1.1e-25 122.1 200 39.0
Gorai.005G131900 Gossypium raimondii HOM05D005158 ORTHO05D005510 1.4e-25 121.7 146 45.9
Prupe.5G232800 Prunus persica HOM05D005158 ORTHO05D005510 1.9e-25 121.3 86 68.6
Os06g0269200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 9.3e-25 119.0 84 60.7
Thecc.02G284900 Theobroma cacao HOM05D005158 ORTHO05D005510 3.5e-24 117.1 77 74.0
MD16G1025900 Malus domestica HOM05D005158 ORTHO05D005510 4.6e-24 116.7 78 73.1
Solyc05g017940.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 3.9e-23 113.6 116 51.7
Peaxi162Scf00159g01110 Petunia axillaris HOM05D005158 ORTHO05D005510 2.1e-21 107.8 108 51.9
HanXRQChr08g0212271 Helianthus annuus HOM05D005158 ORTHO05D005510 1.4e-20 105.1 67 71.6
PRCOL_00000423 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 3.1e-20 104.0 206 34.5
AagrBONN_evm.TU.Sc2ySwM_368.719 Anthoceros agrestis HOM05D005158 ORTHO05D005510 4.9e-18 96.7 313 27.5
MCO07G148 Micromonas commoda HOM05D005158 ORTHO05D005510 4.2e-17 93.6 170 34.7
Pp3c9_21990 Physcomitrium patens HOM05D005158 ORTHO05D005510 6.0e-16 89.7 307 26.4
Manes.09G075257 Manihot esculenta HOM05D005158 ORTHO05D005510 2.8e-13 80.9 58 69.0
Cpa.g.sc130.33 Carica papaya HOM05D005158 ORTHO05D005510 6.2e-13 79.7 64 54.7
RcHm_v2.0_Chr7g0199801 Rosa chinensis HOM05D005158 ORTHO05D005510 4.0e-12 77.0 58 58.6
AagrBONN_evm.TU.Sc2ySwM_117.460 Anthoceros agrestis HOM05D005158 ORTHO05D005510 1.2e-11 75.5 244 28.3
SMO118G0092 Selaginella moellendorffii HOM05D032652 ORTHO05D005510 4.5e-11 73.6 273 23.4
SMO263G0001 Selaginella moellendorffii HOM05D032652 ORTHO05D005510 7.6e-11 72.8 273 23.4
MCO07G404 Micromonas commoda HOM05D005158 ORTHO05D005510 6.4e-10 69.7 246 26.4
MCO04G437 Micromonas commoda HOM05D005158 ORTHO05D005510 1.1e-09 68.9 318 24.5
Aqoxy2G01678 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 4.2e-09 67.0 62 45.2
Pp3c15_24210 Physcomitrium patens HOM05D005158 ORTHO05D005510 9.3e-09 65.9 255 27.1
BcaC08g46535 Brassica carinata HOM05D005158 ORTHO05D005510 3.3e-06 57.4 66 50.0


User provided reference genes

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