Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1729 Capsella rubella HOM05D005895 ORTHO05D007916 0.0e+00 1160.6 596 100.0
AT1G70570 Arabidopsis thaliana HOM05D005895 ORTHO05D007916 0.0e+00 1107.4 596 95.1
AL2G29960 Arabidopsis lyrata HOM05D005895 ORTHO05D007916 0.0e+00 1088.9 597 93.8
CARHR063780 Cardamine hirsuta HOM05D005895 ORTHO05D007916 0.0e+00 1077.4 596 93.0
Sp5g25720 Schrenkiella parvula HOM05D005895 ORTHO05D007916 9.9e-309 1062.8 597 91.5
Thhalv10018314m.g Eutrema salsugineum HOM05D005895 ORTHO05D007916 8.4e-308 1059.7 597 91.3
A02p16660 Brassica napus HOM05D005895 ORTHO05D007916 9.6e-304 1046.2 601 90.8
BcaB05g24593 Brassica carinata HOM05D005895 ORTHO05D007916 6.2e-303 1043.5 598 90.8
BraA02t06722Z Brassica rapa HOM05D005895 ORTHO05D007916 3.1e-302 1041.2 601 90.3
C02p27920 Brassica napus HOM05D005895 ORTHO05D007916 4.2e-299 1030.8 600 89.5
BolC2t08837H Brassica oleracea HOM05D005895 ORTHO05D007916 4.2e-299 1030.8 600 89.5
BcaC03g15207 Brassica carinata HOM05D005895 ORTHO05D007916 2.9e-292 1008.1 587 89.3
Aa31LG4G10380 Aethionema arabicum HOM05D005895 ORTHO05D007916 6.9e-286 986.9 600 85.8
THA.LOC104822982 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 1.5e-285 985.7 596 84.9
Gohir.A04G136400 Gossypium hirsutum HOM05D005895 ORTHO05D007916 3.3e-264 914.8 596 78.2
Gorai.012G172600 Gossypium raimondii HOM05D005895 ORTHO05D007916 8.2e-263 910.2 596 77.9
COL.COLO4_24246 Corchorus olitorius HOM05D005895 ORTHO05D007916 8.5e-260 900.2 597 77.9
Haze_12237 Corylus avellana HOM05D005895 ORTHO05D007916 1.1e-259 899.8 597 76.5
QL03p058522 Quercus lobata HOM05D005895 ORTHO05D007916 1.5e-259 899.4 597 76.7
Thecc.02G257400 Theobroma cacao HOM05D005895 ORTHO05D007916 5.5e-259 897.5 598 76.6
Cfa009199 Carpinus fangiana HOM05D005895 ORTHO05D007916 1.6e-258 896.0 597 76.4
Ciclev10030909m.g Citrus clementina HOM05D005895 ORTHO05D007916 1.4e-257 892.9 596 76.3
Cpa.g.sc33.4 Carica papaya HOM05D005895 ORTHO05D007916 5.2e-257 891.0 584 77.6
Atru.chr11.2133 Acer truncatum HOM05D005895 ORTHO05D007916 9.7e-256 886.7 601 75.5
MELO3C011963.2 Cucumis melo HOM05D005895 ORTHO05D007916 4.8e-255 884.4 596 75.5
PGR119G2505 Punica granatum HOM05D005895 ORTHO05D007916 4.8e-255 884.4 597 75.4
Atru.chr11.2117 Acer truncatum HOM05D005895 ORTHO05D007916 8.2e-255 883.6 601 75.0
CiPaw.05G183400 Carya illinoinensis HOM05D005895 ORTHO05D007916 1.8e-254 882.5 597 75.4
Gohir.D04G179500 Gossypium hirsutum HOM05D005895 ORTHO05D007916 2.4e-254 882.1 577 78.2
CANSAT01G2589 Cannabis sativa HOM05D005895 ORTHO05D007916 2.0e-253 879.0 597 75.4
Potri.010G044900 Populus trichocarpa HOM05D005895 ORTHO05D007916 2.2e-252 875.5 597 74.7
CsaV3_5G031240 Cucumis sativus L. HOM05D005895 ORTHO05D007916 1.1e-251 873.2 596 74.7
GSVIVG01004086001 Vitis vinifera HOM05D005895 ORTHO05D007916 4.2e-251 871.3 596 73.8
Prupe.1G247400 Prunus persica HOM05D005895 ORTHO05D007916 1.2e-250 869.8 596 74.5
Eucgr.H02516 Eucalyptus grandis HOM05D005895 ORTHO05D007916 4.7e-250 867.8 597 73.9
TWI36G0590 Tripterygium wilfordii HOM05D005895 ORTHO05D007916 6.1e-250 867.5 603 73.3
Sabra10G0023200 Salix brachista HOM05D005895 ORTHO05D007916 4.0e-249 864.8 580 75.0
CSS0018548 Camellia sinensis var. sinensis HOM05D005895 ORTHO05D007916 3.4e-248 861.7 596 73.8
arahy.Tifrunner.gnm1.ann1.LQ91H7 Arachis hypogaea HOM05D005895 ORTHO05D007916 1.7e-247 859.4 597 72.5
TPR.G34672 Trifolium pratense HOM05D005895 ORTHO05D007916 3.7e-247 858.2 599 72.5
Gorai.005G179700 Gossypium raimondii HOM05D005895 ORTHO05D007916 6.3e-247 857.4 598 74.9
MD13G1098000 Malus domestica HOM05D005895 ORTHO05D007916 1.1e-246 856.7 599 73.0
TAR371G0306 Trochodendron aralioides HOM05D005895 ORTHO05D007916 1.1e-246 856.7 599 73.1
Hund06020 Selenicereus undatus HOM05D005895 ORTHO05D007916 1.8e-246 855.9 607 70.7
Actinidia27801 Actinidia chinensis HOM05D005895 ORTHO05D007916 3.1e-246 855.1 597 72.5
AUR62024296 Chenopodium quinoa HOM05D005895 ORTHO05D007916 3.1e-246 855.1 600 73.0
Sed0023548 Sechium edule HOM05D005895 ORTHO05D007916 5.4e-246 854.4 602 73.3
RcHm_v2.0_Chr4g0433361 Rosa chinensis HOM05D005895 ORTHO05D007916 7.0e-246 854.0 597 72.2
AUR62005446 Chenopodium quinoa HOM05D005895 ORTHO05D007916 4.5e-245 851.3 600 72.2
MBI10_g00734_MAGBIO Magnolia biondii HOM05D005895 ORTHO05D007916 2.3e-244 849.0 594 72.1
Medtr8g069525 Medicago truncatula HOM05D005895 ORTHO05D007916 1.9e-243 845.9 596 72.0
MD16G1098900 Malus domestica HOM05D005895 ORTHO05D007916 3.3e-243 845.1 599 71.8
CAN.G7.20 Capsicum annuum HOM05D005895 ORTHO05D007916 1.2e-242 843.2 594 72.1
Solyc04g025540.3 Solanum lycopersicum HOM05D005895 ORTHO05D007916 1.2e-242 843.2 594 71.9
Glyma.08G283100 Glycine max HOM05D005895 ORTHO05D007916 2.1e-242 842.4 537 76.2
Ah.03g133150 Amaranthus hybridus HOM05D005895 ORTHO05D007916 1.0e-241 840.1 599 73.0
FvH4_4g25910 Fragaria vesca HOM05D005895 ORTHO05D007916 1.0e-241 840.1 546 76.0
Sopen04g012770 Solanum pennellii HOM05D005895 ORTHO05D007916 1.4e-241 839.7 539 76.6
Lj6A811T72 Lonicera japonica HOM05D005895 ORTHO05D007916 3.0e-241 838.6 597 70.9
Sc04g0009430 Simmondsia chinensis HOM05D005895 ORTHO05D007916 2.6e-240 835.5 578 72.5
DCAR_007061 Daucus carota HOM05D005895 ORTHO05D007916 5.7e-240 834.3 596 71.0
VMungo0251G0514 Vigna mungo HOM05D005895 ORTHO05D007916 7.5e-240 833.9 598 70.6
ECA233G5390 Erigeron canadensis HOM05D005895 ORTHO05D007916 6.3e-239 830.9 540 75.7
FAN07G1086 Fragaria x ananassa HOM05D005895 ORTHO05D007916 6.3e-239 830.9 601 70.5
FAN12G1268 Fragaria x ananassa HOM05D005895 ORTHO05D007916 3.1e-238 828.6 546 75.5
EL10Ac6g13787 Beta vulgaris HOM05D005895 ORTHO05D007916 4.1e-238 828.2 618 69.7
Lj4g0008127 Lotus japonicus HOM05D005895 ORTHO05D007916 5.4e-238 827.8 594 70.0
FAN12G2739 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.2e-237 826.6 542 75.8
Lalb_Chr05g0228401 Lupinus albus HOM05D005895 ORTHO05D007916 1.2e-237 826.6 532 75.9
PSO017G6602 Papaver somniferum HOM05D005895 ORTHO05D007916 1.0e-236 823.5 598 70.9
SalBow8G2958 Salvia bowleyana HOM05D005895 ORTHO05D007916 1.3e-236 823.2 594 70.9
vmacro01130 Vaccinium macrocarpon HOM05D005895 ORTHO05D007916 1.3e-236 823.2 640 67.7
PSO478G2260 Papaver somniferum HOM05D005895 ORTHO05D007916 2.9e-236 822.0 598 71.1
FAN17G0264 Fragaria x ananassa HOM05D005895 ORTHO05D007916 5.0e-236 821.2 630 67.9
THA.LOC104818151 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 8.6e-236 820.5 496 84.3
Cc04_g11160 Coffea canephora HOM05D005895 ORTHO05D007916 6.1e-234 814.3 562 71.9
Migut.E00194 Erythranthe guttata HOM05D005895 ORTHO05D007916 2.6e-232 808.9 594 69.5
Aqoxy5G03807 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 3.7e-231 805.1 597 69.5
Gohir.D02G159600 Gossypium hirsutum HOM05D005895 ORTHO05D007916 3.5e-229 798.5 596 71.1
HanXRQChr08g0208071 Helianthus annuus HOM05D005895 ORTHO05D007916 8.6e-228 793.9 543 72.9
ClCG05G025660 Citrullus lanatus HOM05D005895 ORTHO05D007916 1.1e-225 786.9 596 69.5
FAN22G0931 Fragaria x ananassa HOM05D005895 ORTHO05D007916 6.8e-225 784.3 634 65.8
Nitab4.5_0006332g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 1.5e-224 783.1 597 67.7
Aqoxy3G01161 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 2.2e-223 779.2 569 69.1
Os02g0131200 Oryza sativa ssp. japonica HOM05D005895 ORTHO05D007916 3.5e-221 771.9 560 70.0
Manes.12G024300 Manihot esculenta HOM05D005895 ORTHO05D007916 1.7e-220 769.6 522 75.9
Zm00001eb231230 Zea mays HOM05D005895 ORTHO05D007916 1.9e-219 766.1 557 69.5
Nn4g22655 Nelumbo nucifera HOM05D005895 ORTHO05D007916 1.2e-218 763.5 542 70.5
HPP92_003081 Vanilla planifolia HOM05D005895 ORTHO05D007916 1.2e-218 763.5 555 69.7
arahy.Tifrunner.gnm1.ann1.0I87EX Arachis hypogaea HOM05D005895 ORTHO05D007916 1.5e-216 756.5 526 72.2
ATR0585G083 Amborella trichopoda HOM05D005895 ORTHO05D007916 5.8e-216 754.6 557 69.1
Nitab4.5_0000370g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 4.9e-215 751.5 597 66.2
Psat0s3772g0040 Pisum sativum HOM05D005895 ORTHO05D007916 5.4e-214 748.0 524 71.9
Lsat_1_v5_gn_8_150700 Lactuca sativa HOM05D005895 ORTHO05D007916 2.1e-213 746.1 597 65.3
Manes.13G025800 Manihot esculenta HOM05D005895 ORTHO05D007916 7.8e-213 744.2 470 79.1
Ca_22578_v3 Cicer arietinum L. HOM05D005895 ORTHO05D007916 3.0e-212 742.3 526 71.3
Phvul.003G063900 Phaseolus vulgaris HOM05D005895 ORTHO05D007916 1.1e-209 733.8 461 76.4
Duzib251G0200 Durio zibethinus HOM05D005895 ORTHO05D007916 4.0e-201 705.3 596 64.9
MSTRG.2417 Avicennia marina HOM05D005895 ORTHO05D007916 1.2e-200 703.7 442 77.6
Gohir.A03G136300 Gossypium hirsutum HOM05D005895 ORTHO05D007916 2.9e-199 699.1 494 72.9
Sed0009772 Sechium edule HOM05D005895 ORTHO05D007916 1.9e-198 696.4 494 72.1
Oeu059911.1 Olea europaea HOM05D005895 ORTHO05D007916 1.5e-195 686.8 539 66.4
Mapoly0129s0050 Marchantia polymorpha HOM05D005895 ORTHO05D007916 2.0e-192 676.4 510 67.1
Zm00001eb209010 Zea mays HOM05D005895 ORTHO05D007916 1.8e-188 663.3 551 62.8
Pp3c12_14340 Physcomitrium patens HOM05D005895 ORTHO05D007916 2.5e-187 659.4 505 66.1
unitig_52.g17177 Utricularia gibba HOM05D005895 ORTHO05D007916 2.8e-186 656.0 539 63.1
Peaxi162Scf01242g00143 Petunia axillaris HOM05D005895 ORTHO05D007916 1.3e-178 630.6 384 78.6
SMO119G0060 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 1.7e-175 620.2 507 63.7
AagrBONN_evm.TU.Sc2ySwM_368.1304 Anthoceros agrestis HOM05D005895 ORTHO05D007916 1.7e-162 577.0 447 64.2
Dinv24803 Davidia involucrata HOM05D005895 ORTHO05D007916 1.4e-158 563.9 392 73.7
Pp3c10_19590 Physcomitrium patens HOM05D005895 ORTHO05D007916 1.7e-122 444.1 324 65.4
SHI17741 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-89 334.7 393 48.6
FAN18G3006 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.7e-87 327.8 200 79.0
CBR_g37586 Chara braunii HOM05D000019 ORTHO05D000048 5.8e-67 259.6 274 51.5
CBR_g37584 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-55 221.9 208 53.8
SEGI_05407 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 5.3e-52 209.9 154 68.8
Peaxi162Scf02256g00001 Petunia axillaris HOM05D005895 ORTHO05D007916 1.1e-46 192.2 143 67.8
BcaB08g34808 Brassica carinata HOM05D005895 ORTHO05D007916 1.2e-43 182.2 102 93.1
SEGI_24305 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 1.7e-37 161.8 100 75.0
SEGI_08481 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 4.0e-31 140.6 101 66.3
DCAR_028023 Daucus carota HOM05D005895 ORTHO05D007916 1.9e-25 121.7 106 61.3
BcaB05g24594 Brassica carinata HOM05D005895 ORTHO05D012801 9.4e-25 119.4 107 66.4
Ah.07g201790 Amaranthus hybridus HOM05D005895 ORTHO05D007916 6.8e-23 113.2 66 78.8
SMO163G0072 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 4.4e-22 110.5 174 41.4
CSS0038190 Camellia sinensis var. sinensis HOM05D033929 ORTHO05D026310 1.2e-19 102.4 123 52.0
A02p16670 Brassica napus HOM05D005895 ORTHO05D012801 2.0e-19 101.7 65 81.5
BraA02t06723Z Brassica rapa HOM05D005895 ORTHO05D012801 2.0e-19 101.7 65 81.5
Rhsim12G0041200 Rhododendron simsii HOM05D005895 ORTHO05D007916 3.5e-19 100.9 76 65.8
C02p27930 Brassica napus HOM05D005895 ORTHO05D012801 1.3e-18 99.0 68 77.9
BolC2t08838H Brassica oleracea HOM05D005895 ORTHO05D012801 1.3e-18 99.0 68 77.9
Gorai.012G172500 Gossypium raimondii HOM05D005895 ORTHO05D007916 4.7e-16 90.5 54 77.8
DCAR_029453 Daucus carota HOM05D005895 ORTHO05D007916 3.0e-15 87.8 68 64.7
Actinidia08142 Actinidia chinensis HOM05D005895 ORTHO05D026310 4.4e-06 57.4 123 39.0
SEGI_38231 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 4.4e-06 57.4 38 68.4


User provided reference genes

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