Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 2.0e-195 685.6 356 100.0
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 7.2e-190 667.2 356 95.2
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 1.3e-178 629.8 356 91.3
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 3.5e-176 621.7 356 90.4
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 7.8e-176 620.5 357 88.5
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 2.6e-171 605.5 356 84.8
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 2.6e-171 605.5 356 84.8
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 7.5e-171 604.0 357 86.8
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 2.2e-170 602.4 357 85.7
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 4.6e-168 594.7 357 84.3
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 4.6e-168 594.7 357 84.3
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 6.6e-167 590.9 357 83.8
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 1.1e-164 583.6 361 85.0
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 5.4e-161 571.2 357 82.6
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 7.6e-155 550.8 356 79.8
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 1.7e-138 496.5 356 72.8
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 2.7e-128 462.6 362 64.4
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 3.9e-127 458.8 357 65.5
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 1.1e-126 457.2 361 63.4
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.9e-126 456.4 358 63.4
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 6.2e-125 451.4 360 64.2
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 6.2e-125 451.4 360 64.2
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 1.1e-124 450.7 355 64.2
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 6.9e-124 448.0 357 65.8
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 1.5e-123 446.8 356 62.6
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 3.4e-123 445.7 357 63.6
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 7.6e-123 444.5 356 63.2
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 1.3e-122 443.7 357 62.7
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 1.7e-122 443.4 358 61.7
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 2.2e-122 443.0 357 65.3
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.9e-121 439.9 357 63.3
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 9.3e-121 437.6 357 62.7
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.2e-120 437.2 357 61.9
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.2e-120 437.2 362 59.9
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 1.6e-120 436.8 356 62.1
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 3.5e-120 435.6 357 62.7
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 6.1e-120 434.9 360 61.9
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 1.0e-119 434.1 358 62.0
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 1.0e-119 434.1 358 61.2
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 2.3e-119 433.0 356 61.2
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 5.1e-119 431.8 364 61.3
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 1.5e-118 430.3 357 62.2
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 1.5e-118 430.3 356 60.1
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 1.5e-118 430.3 360 62.5
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 2.5e-118 429.5 356 61.2
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 3.3e-118 429.1 364 61.3
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 4.3e-118 428.7 361 60.7
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 7.4e-118 427.9 357 60.5
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 1.3e-117 427.2 358 59.8
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 1.6e-117 426.8 357 60.5
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 2.2e-117 426.4 357 60.8
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 3.7e-117 425.6 353 60.1
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 8.2e-117 424.5 353 59.8
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 8.2e-117 424.5 356 60.4
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.4e-116 423.7 355 61.7
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 5.3e-116 421.8 359 60.2
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 6.9e-116 421.4 356 60.4
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 2.0e-115 419.9 356 60.7
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.0e-114 417.5 357 59.1
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 2.2e-114 416.4 357 60.2
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 2.9e-114 416.0 358 59.2
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 2.9e-114 416.0 358 58.9
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 6.5e-114 414.8 356 59.3
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 6.5e-114 414.8 357 60.8
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 8.5e-114 414.5 364 59.6
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 7.2e-113 411.4 356 58.4
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 2.1e-112 409.8 362 59.7
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 7.9e-112 407.9 362 58.6
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 2.3e-111 406.4 358 58.7
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 3.0e-111 406.0 347 59.4
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 3.0e-111 406.0 361 57.6
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 5.1e-111 405.2 358 58.4
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 1.5e-110 403.7 353 57.8
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 2.2e-109 399.8 351 58.7
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 3.7e-109 399.1 357 57.1
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 6.3e-109 398.3 359 57.7
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 4.1e-108 395.6 341 60.4
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.3e-108 395.2 356 58.4
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 6.9e-108 394.8 356 58.4
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.2e-107 394.0 356 58.4
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.2e-107 394.0 356 58.4
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.2e-107 394.0 356 57.6
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.4e-107 392.5 356 58.4
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 1.7e-106 390.2 341 58.1
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 5.0e-106 388.7 357 56.3
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 6.5e-106 388.3 356 57.3
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 1.4e-105 387.1 356 57.3
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 2.5e-105 386.3 356 57.0
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 4.2e-105 385.6 363 56.2
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 7.2e-105 384.8 349 57.9
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 4.7e-104 382.1 345 56.8
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.4e-103 380.6 357 57.1
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 1.5e-102 377.1 356 55.6
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 2.6e-102 376.3 341 58.1
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 1.3e-101 374.0 361 53.5
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 6.3e-101 371.7 279 71.3
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 1.1e-100 370.9 321 61.1
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 7.0e-100 368.2 356 53.4
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 3.5e-99 365.9 352 55.1
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 1.3e-98 364.0 339 57.5
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 1.1e-97 360.9 361 52.1
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 5.5e-97 358.6 360 51.7
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 3.6e-96 355.9 334 55.4
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 8.2e-93 344.7 358 52.2
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 1.7e-90 337.0 302 57.6
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 4.2e-89 332.4 363 50.7
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 3.4e-86 322.8 363 50.4
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 8.3e-85 318.2 309 56.0
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 3.2e-81 306.2 310 57.4
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 1.2e-80 304.3 353 45.6
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 1.6e-80 303.9 310 57.1
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 7.5e-78 295.0 234 60.7
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 8.6e-74 281.6 346 46.0
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 5.7e-70 268.9 239 57.7
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 4.9e-69 265.8 358 43.0
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 8.3e-69 265.0 233 56.7
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 1.2e-62 244.6 360 40.3
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 2.2e-61 240.4 372 39.8
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 1.9e-60 237.3 352 38.4
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 3.9e-58 229.6 260 48.5
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 1.2e-56 224.6 353 38.2
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.9e-52 210.7 210 53.8
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 1.9e-52 210.7 203 55.7
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 1.0e-50 204.9 353 41.4
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 8.1e-48 195.3 176 59.7
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 2.7e-43 180.3 113 80.5
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 4.3e-41 172.9 115 77.4
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 1.2e-35 154.8 145 58.6
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 1.0e-34 151.8 88 89.8
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 1.3e-32 144.8 125 59.2
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 1.4e-31 141.4 115 64.3
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 2.0e-30 137.5 205 43.9
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.9e-26 123.2 107 58.9
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.2e-22 111.7 107 56.1
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 2.6e-22 110.5 90 64.4
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 9.9e-22 108.6 124 55.6
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 2.2e-21 107.5 99 56.6
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 2.2e-21 107.5 216 32.9
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 7.1e-20 102.4 79 58.2
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 7.1e-20 102.4 377 26.5
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 6.0e-19 99.4 356 24.4
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 1.9e-17 94.4 85 68.2
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 6.2e-16 89.4 52 82.7
BcaC07g40045 Brassica carinata HOM05D001925 ORTHO05D005701 7.9e-11 72.4 57 68.4
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 2.5e-09 67.4 176 30.7


User provided reference genes

Program Settings