Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 4.0e-231 804.3 379 100.0
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 2.2e-205 718.8 379 88.4
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 4.7e-203 711.1 378 87.8
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 7.0e-199 697.2 379 85.5
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 1.2e-198 696.4 379 86.3
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 2.3e-194 682.2 379 83.9
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 4.1e-191 671.4 381 82.2
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 1.6e-190 669.5 381 81.9
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 4.2e-188 661.4 381 81.4
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 4.2e-188 661.4 381 81.4
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 1.0e-186 656.8 399 76.7
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 9.5e-180 633.6 384 78.9
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 1.4e-159 566.6 379 69.7
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 6.0e-150 534.6 379 64.1
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 2.3e-149 532.7 379 64.6
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 3.3e-148 528.9 379 63.1
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 1.6e-147 526.6 379 62.5
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 1.7e-144 516.5 381 63.5
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 4.9e-144 515.0 379 62.0
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 8.4e-144 514.2 379 64.6
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 1.9e-143 513.1 379 63.6
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 2.4e-143 512.7 380 62.9
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 5.4e-143 511.5 379 62.5
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 9.2e-143 510.8 381 62.5
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 3.5e-142 508.8 379 63.3
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 7.8e-142 507.7 379 62.5
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 6.6e-141 504.6 383 62.9
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 1.5e-140 503.4 379 60.9
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 5.6e-140 501.5 378 60.8
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 6.2e-139 498.0 380 63.2
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 1.4e-138 496.9 379 60.4
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 3.1e-138 495.7 407 58.7
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 2.0e-137 493.0 362 62.4
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 3.4e-137 492.3 379 60.4
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 7.6e-137 491.1 387 59.9
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 1.3e-136 490.3 380 62.6
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 2.9e-136 489.2 380 61.3
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 3.8e-136 488.8 379 58.6
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 4.9e-136 488.4 395 60.3
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 8.4e-136 487.6 378 59.3
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 5.4e-135 485.0 383 59.3
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 5.4e-135 485.0 381 59.8
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 4.6e-134 481.9 387 58.1
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 7.8e-134 481.1 379 58.3
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 1.3e-133 480.3 378 60.1
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 3.0e-133 479.2 386 58.5
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 5.6e-132 474.9 380 59.2
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 7.3e-132 474.6 348 62.6
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 9.6e-132 474.2 387 57.9
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 9.6e-132 474.2 406 54.9
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 9.6e-132 474.2 402 57.7
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 1.6e-131 473.4 379 60.4
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 1.6e-131 473.4 379 58.8
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 2.1e-131 473.0 380 58.9
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 3.6e-131 472.2 380 58.9
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 1.4e-130 470.3 379 58.0
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 1.3e-128 463.8 365 58.6
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 2.9e-128 462.6 379 57.3
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 5.4e-127 458.4 470 51.5
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 7.1e-127 458.0 380 57.4
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 2.1e-126 456.4 381 56.2
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 1.8e-125 453.4 379 57.8
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 3.0e-125 452.6 379 57.0
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 5.1e-125 451.8 380 56.6
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 8.7e-125 451.1 378 56.1
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 1.9e-124 449.9 379 56.2
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 7.4e-124 448.0 379 57.3
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 2.1e-123 446.4 384 56.2
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 6.9e-122 441.4 379 56.5
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 1.2e-121 440.7 379 55.7
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 7.6e-121 438.0 422 51.2
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.1e-119 434.1 378 54.5
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 4.2e-119 432.2 379 52.5
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 9.3e-119 431.0 351 57.8
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 2.7e-118 429.5 350 58.9
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 2.7e-118 429.5 390 54.6
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 5.1e-117 425.2 379 54.4
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 1.5e-116 423.7 345 58.6
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 9.0e-114 414.5 309 60.8
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 7.1e-111 404.8 355 56.3
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 1.3e-109 400.6 385 52.7
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 1.2e-105 387.5 336 56.0
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 1.7e-104 383.6 322 56.2
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 5.0e-104 382.1 310 57.7
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 9.7e-100 367.9 381 48.0
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.5e-97 360.5 393 45.8
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 1.7e-96 357.1 275 61.5
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 2.7e-94 349.7 286 60.5
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 1.1e-92 344.4 391 46.8
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 1.7e-91 340.5 369 43.4
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 2.2e-88 330.1 264 60.6
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.9e-88 329.7 249 60.2
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 3.2e-87 326.2 306 52.3
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 8.2e-83 311.6 385 40.8
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 7.7e-81 305.1 380 43.7
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 4.2e-79 299.3 355 44.8
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 7.2e-79 298.5 399 41.6
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 6.3e-75 285.4 380 41.3
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 1.5e-68 264.2 218 58.7
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 4.8e-67 259.2 310 47.1
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 4.4e-52 209.5 299 38.5
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 2.3e-40 170.6 372 29.3
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 1.1e-39 168.3 379 30.1
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 3.3e-39 166.8 375 28.8
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 5.6e-39 166.0 378 30.7
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 2.8e-38 163.7 370 31.1
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 3.6e-38 163.3 372 29.0
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 4.7e-38 162.9 372 29.3
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 4.7e-38 162.9 370 30.8
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 4.7e-38 162.9 372 29.3
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 4.7e-38 162.9 372 29.3
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 8.1e-38 162.2 370 30.8
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 8.1e-38 162.2 369 30.1
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 8.1e-38 162.2 370 30.5
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 1.8e-37 161.0 371 28.8
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 2.3e-37 160.6 371 30.7
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 3.1e-37 160.2 372 30.4
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 4.0e-37 159.8 369 30.1
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 5.2e-37 159.5 371 30.2
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 6.8e-37 159.1 374 29.1
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 6.8e-37 159.1 372 29.3
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 1.5e-36 157.9 368 29.1
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 2.0e-36 157.5 372 28.8
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 2.0e-36 157.5 372 28.8
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 3.4e-36 156.8 372 27.4
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 3.4e-36 156.8 378 29.6
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 4.4e-36 156.4 376 27.4
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 4.4e-36 156.4 374 27.0
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 4.4e-36 156.4 372 29.3
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 9.9e-36 155.2 149 46.3
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 9.9e-36 155.2 369 29.8
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 9.9e-36 155.2 368 28.5
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 1.3e-35 154.8 374 27.5
AUR62026503 Chenopodium quinoa HOM05D001404 ORTHO05D009009 1.7e-35 154.5 181 47.0
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 1.7e-35 154.5 372 28.5
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 1.7e-35 154.5 372 28.0
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 3.7e-35 153.3 376 27.7
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 4.9e-35 152.9 377 28.9
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 4.9e-35 152.9 374 27.0
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 4.9e-35 152.9 374 27.0
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 4.9e-35 152.9 356 28.7
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 8.3e-35 152.1 352 29.3
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 8.3e-35 152.1 372 29.3
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 8.3e-35 152.1 372 29.0
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 1.1e-34 151.8 372 27.7
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 1.4e-34 151.4 370 28.4
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 1.4e-34 151.4 373 28.2
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 1.4e-34 151.4 372 28.8
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 2.4e-34 150.6 372 29.0
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 2.4e-34 150.6 378 28.6
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 2.4e-34 150.6 372 28.8
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 3.2e-34 150.2 372 28.5
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 3.2e-34 150.2 372 28.2
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 4.1e-34 149.8 370 29.5
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 7.1e-34 149.1 114 60.5
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 7.1e-34 149.1 368 28.3
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 3.0e-32 143.7 378 28.0
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 3.0e-32 143.7 373 26.5
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 8.6e-32 142.1 372 27.4
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 3.3e-31 140.2 372 26.9
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 1.8e-29 134.4 374 25.1
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 1.7e-27 127.9 375 25.6
SEGI_39493 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 1.7e-27 127.9 130 46.9
SalBow7G1134 Salvia bowleyana HOM05D001404 ORTHO05D009009 3.2e-26 123.6 125 48.0
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 1.7e-24 117.9 372 25.5
ATR0712G115 Amborella trichopoda HOM05D001404 ORTHO05D009009 1.5e-23 114.8 72 70.8
MD13G1085400 Malus domestica HOM05D001404 ORTHO05D009009 4.3e-23 113.2 86 61.6
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 9.6e-23 112.1 296 28.4
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 2.8e-22 110.5 291 28.2
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 3.6e-22 110.2 440 23.9
SEGI_25303 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 1.8e-21 107.8 132 39.4
SEGI_33690 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 3.1e-21 107.1 137 40.1
TPR.G17205 Trifolium pratense HOM05D001404 ORTHO05D009009 2.6e-20 104.0 73 61.6
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 1.3e-16 91.7 197 30.5
Duzib251G0488 Durio zibethinus HOM05D001404 ORTHO05D009009 1.7e-16 91.3 64 59.4
Lsat_1_v5_gn_1_78741 Lactuca sativa HOM05D000538 ORTHO05D009009 1.2e-12 78.6 75 46.7
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 4.5e-12 76.6 128 38.3
HanXRQChr17g0570121 Helianthus annuus HOM05D001404 ORTHO05D009009 7.6e-12 75.9 82 43.9
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 2.2e-11 74.3 191 26.2
C06p36300 Brassica napus HOM05D001404 ORTHO05D009009 2.4e-10 70.9 51 66.7
Medtr5g036455 Medicago truncatula HOM05D001404 ORTHO05D009009 4.2e-10 70.1 71 50.7
Lsat_1_v5_gn_1_40080 Lactuca sativa HOM05D000207 ORTHO05D000191 3.9e-08 63.5 59 49.2
MELO3C012030.2 Cucumis melo HOM05D001404 ORTHO05D009009 3.7e-06 57.0 34 70.6


User provided reference genes

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