Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1666 Capsella rubella HOM05D007009 ORTHO05D008451 8.6e-117 423.7 219 100.0
AT1G69980 Arabidopsis thaliana HOM05D007009 ORTHO05D008451 9.0e-82 307.4 206 79.6
AL2G29220 Arabidopsis lyrata HOM05D007009 ORTHO05D008451 3.8e-80 302.0 204 77.9
Sp5g25090 Schrenkiella parvula HOM05D007009 ORTHO05D008451 1.7e-77 293.1 208 76.9
Thhalv10019139m.g Eutrema salsugineum HOM05D007009 ORTHO05D008451 1.5e-76 290.0 211 75.8
Aa31LG4G10880 Aethionema arabicum HOM05D007009 ORTHO05D008451 6.4e-72 274.6 208 71.2
CARHR063080 Cardamine hirsuta HOM05D007009 ORTHO05D008451 8.7e-69 264.2 205 72.2
BolC6t39457H Brassica oleracea HOM05D007009 ORTHO05D008451 9.0e-66 254.2 219 65.8
BcaC08g46448 Brassica carinata HOM05D007009 ORTHO05D008451 9.3e-63 244.2 219 63.0
C06p43850 Brassica napus HOM05D007009 ORTHO05D008451 6.3e-59 231.5 180 71.1
THA.LOC104808792 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 5.5e-55 218.4 202 60.9
BcaB03g14776 Brassica carinata HOM05D007009 ORTHO05D008451 1.6e-54 216.9 190 65.3
BcaB03g14779 Brassica carinata HOM05D007009 ORTHO05D008451 9.7e-44 181.0 201 56.7
Ciclev10032750m.g Citrus clementina HOM05D007009 ORTHO05D008451 1.7e-43 180.3 212 50.0
AUR62026539 Chenopodium quinoa HOM05D007009 ORTHO05D008451 3.7e-43 179.1 201 52.2
TWI18G0515 Tripterygium wilfordii HOM05D007009 ORTHO05D008451 6.3e-43 178.3 204 52.0
A07p36430 Brassica napus HOM05D007009 ORTHO05D008451 2.4e-42 176.4 215 52.1
CsaV3_5G032050 Cucumis sativus L. HOM05D007009 ORTHO05D008451 3.1e-42 176.0 215 50.7
COL.COLO4_36263 Corchorus olitorius HOM05D007009 ORTHO05D008451 2.0e-41 173.3 199 46.7
Prupe.1G262900 Prunus persica HOM05D007009 ORTHO05D008451 2.0e-41 173.3 210 47.1
Ah.03g132140 Amaranthus hybridus HOM05D007009 ORTHO05D008451 4.5e-41 172.2 211 49.3
ClCG05G024860 Citrullus lanatus HOM05D007009 ORTHO05D008451 4.5e-41 172.2 215 49.3
Nitab4.5_0008607g0010 Nicotiana tabacum HOM05D007009 ORTHO05D008451 1.0e-40 171.0 214 48.6
Aqoxy3G03177 Aquilegia oxysepala HOM05D007009 ORTHO05D008451 1.3e-40 170.6 186 51.6
Medtr5g037120 Medicago truncatula HOM05D007009 ORTHO05D008451 1.3e-40 170.6 220 46.4
Gohir.D05G322400 Gossypium hirsutum HOM05D007009 ORTHO05D008451 2.2e-40 169.9 218 45.4
Atru.chr11.1917 Acer truncatum HOM05D007009 ORTHO05D008451 2.9e-40 169.5 218 47.2
Nitab4.5_0001030g0090 Nicotiana tabacum HOM05D007009 ORTHO05D008451 3.8e-40 169.1 214 49.5
Gorai.009G346000 Gossypium raimondii HOM05D007009 ORTHO05D008451 1.4e-39 167.2 218 45.4
Manes.01G193800 Manihot esculenta HOM05D007009 ORTHO05D008451 1.9e-39 166.8 225 47.6
Nn4g22971 Nelumbo nucifera HOM05D007009 ORTHO05D008451 3.2e-39 166.0 217 47.5
arahy.Tifrunner.gnm1.ann1.8B6YVA Arachis hypogaea HOM05D007009 ORTHO05D008451 4.2e-39 165.6 227 45.8
CAN.G27.64 Capsicum annuum HOM05D007009 ORTHO05D008451 4.2e-39 165.6 217 47.0
Gohir.A05G320100 Gossypium hirsutum HOM05D007009 ORTHO05D008451 5.5e-39 165.2 210 45.7
CANSAT01G1662 Cannabis sativa HOM05D007009 ORTHO05D008451 7.2e-39 164.9 217 45.6
Thecc.02G237500 Theobroma cacao HOM05D007009 ORTHO05D008451 7.2e-39 164.9 209 45.5
Dinv31143 Davidia involucrata HOM05D007009 ORTHO05D008451 1.6e-38 163.7 228 46.5
Actinidia08196 Actinidia chinensis HOM05D007009 ORTHO05D008451 2.1e-38 163.3 219 46.1
arahy.Tifrunner.gnm1.ann1.IMS4B0 Arachis hypogaea HOM05D007009 ORTHO05D008451 2.7e-38 162.9 219 46.1
CSS0013437 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 2.7e-38 162.9 223 44.4
Glyma.01G038700 Glycine max HOM05D007009 ORTHO05D008451 3.6e-38 162.5 225 44.4
PGR102G0074 Punica granatum HOM05D007009 ORTHO05D008451 4.7e-38 162.2 212 49.1
FvH4_4g35380 Fragaria vesca HOM05D007009 ORTHO05D008451 1.0e-37 161.0 210 46.2
FAN12G0678 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.0e-37 161.0 210 46.2
Peaxi162Scf00828g00312 Petunia axillaris HOM05D007009 ORTHO05D008451 2.3e-37 159.8 215 45.6
Sed0027578 Sechium edule HOM05D007009 ORTHO05D008451 2.3e-37 159.8 210 46.2
Glyma.02G026000 Glycine max HOM05D007009 ORTHO05D008451 3.0e-37 159.5 225 44.4
Lalb_Chr05g0217381 Lupinus albus HOM05D007009 ORTHO05D008451 3.0e-37 159.5 183 48.1
Hma1.2p1_0265F.1_g106360 Hydrangea macrophylla HOM05D007009 ORTHO05D008451 3.9e-37 159.1 212 43.9
PGSC0003DMG401022631 Solanum tuberosum HOM05D007009 ORTHO05D008451 3.9e-37 159.1 220 45.5
FAN17G0686 Fragaria x ananassa HOM05D007009 ORTHO05D008451 6.7e-37 158.3 183 48.6
Cc11_g13910 Coffea canephora HOM05D007009 ORTHO05D008451 1.1e-36 157.5 213 47.4
Eucgr.B03385 Eucalyptus grandis HOM05D007009 ORTHO05D008451 1.5e-36 157.1 229 46.7
Dinv24931 Davidia involucrata HOM05D000094 ORTHO05D002904 2.6e-36 156.4 177 50.3
Duzib251G0800 Durio zibethinus HOM05D007009 ORTHO05D008451 2.6e-36 156.4 195 46.2
Hund25306 Selenicereus undatus HOM05D007009 ORTHO05D008451 2.6e-36 156.4 192 45.3
Solyc05g006580.3 Solanum lycopersicum HOM05D007009 ORTHO05D008451 2.6e-36 156.4 218 45.0
Cfa009076 Carpinus fangiana HOM05D007009 ORTHO05D008451 3.3e-36 156.0 219 45.7
Sopen05g002530 Solanum pennellii HOM05D007009 ORTHO05D008451 3.3e-36 156.0 218 45.4
TPR.G26720 Trifolium pratense HOM05D007009 ORTHO05D008451 3.3e-36 156.0 221 43.4
TAR374G0768 Trochodendron aralioides HOM05D007009 ORTHO05D008451 4.4e-36 155.6 214 44.9
FAN07G0981 Fragaria x ananassa HOM05D007009 ORTHO05D008451 5.7e-36 155.2 180 48.9
Sc11g0001470 Simmondsia chinensis HOM05D007009 ORTHO05D008451 5.7e-36 155.2 161 51.6
PSO832G0198 Papaver somniferum HOM05D007009 ORTHO05D008451 7.4e-36 154.8 215 45.1
Potri.008G191700 Populus trichocarpa HOM05D007009 ORTHO05D008451 7.4e-36 154.8 218 48.6
FAN22G1672 Fragaria x ananassa HOM05D007009 ORTHO05D008451 9.7e-36 154.5 180 48.3
Lj2g0006218 Lotus japonicus HOM05D007009 ORTHO05D008451 9.7e-36 154.5 224 42.0
PSO591G0441 Papaver somniferum HOM05D007009 ORTHO05D008451 9.7e-36 154.5 215 45.6
Potri.010G039466 Populus trichocarpa HOM05D007009 ORTHO05D008451 1.3e-35 154.1 190 48.9
QL03p067658 Quercus lobata HOM05D007009 ORTHO05D008451 6.3e-35 151.8 211 44.1
CiPaw.06G077800 Carya illinoinensis HOM05D007009 ORTHO05D008451 1.4e-34 150.6 178 48.3
GSVIVG01020129001 Vitis vinifera HOM05D007009 ORTHO05D008451 1.4e-34 150.6 182 47.3
RcHm_v2.0_Chr4g0444991 Rosa chinensis HOM05D007009 ORTHO05D008451 5.9e-33 145.2 186 47.8
MELO3C012041.2 Cucumis melo HOM05D007009 ORTHO05D008451 1.9e-31 140.2 176 50.6
Migut.L01370 Erythranthe guttata HOM05D007009 ORTHO05D008451 3.2e-31 139.4 169 46.2
SalBow2G0075 Salvia bowleyana HOM05D007009 ORTHO05D008451 7.2e-31 138.3 175 46.9
CiPaw.05G143700 Carya illinoinensis HOM05D007009 ORTHO05D008451 1.2e-30 137.5 180 45.0
EL10Ac6g13085 Beta vulgaris HOM05D007009 ORTHO05D008451 8.0e-30 134.8 163 49.1
MD16G1083100 Malus domestica HOM05D007009 ORTHO05D008451 3.0e-29 132.9 211 43.1
Duzib268G1291 Durio zibethinus HOM05D007009 ORTHO05D008451 5.2e-29 132.1 173 44.5
Sabra10G0027300 Salix brachista HOM05D007009 ORTHO05D008451 6.7e-29 131.7 152 52.6
VMungo1215G0662 Vigna mungo HOM05D007009 ORTHO05D008451 1.2e-28 131.0 169 42.6
MSTRG.7846 Avicennia marina HOM05D007009 ORTHO05D008451 2.6e-28 129.8 178 42.1
DCAR_026574 Daucus carota HOM05D007009 ORTHO05D008451 4.4e-28 129.0 125 52.8
Rhsim12G0053000 Rhododendron simsii HOM05D007009 ORTHO05D008451 7.5e-28 128.3 175 43.4
Lj6A798T55 Lonicera japonica HOM05D007009 ORTHO05D008451 9.7e-28 127.9 133 49.6
Ca_15204_v3 Cicer arietinum L. HOM05D007009 ORTHO05D008451 1.7e-27 127.1 154 45.5
Os09g0560400 Oryza sativa ssp. japonica HOM05D007009 ORTHO05D008451 3.7e-27 125.9 150 48.7
BolC8t48483H Brassica oleracea HOM05D007009 ORTHO05D008451 8.2e-27 124.8 100 63.0
Psat2g116400 Pisum sativum HOM05D007009 ORTHO05D008451 2.4e-26 123.2 180 43.9
HanXRQChr08g0209091 Helianthus annuus HOM05D007009 ORTHO05D008451 4.1e-26 122.5 160 45.0
Phvul.002G078700 Phaseolus vulgaris HOM05D007009 ORTHO05D008451 1.3e-24 117.5 222 36.5
AUR62039445 Chenopodium quinoa HOM05D007009 ORTHO05D008451 3.8e-24 115.9 132 50.8
Cpa.g.sc5.312 Carica papaya HOM05D007009 ORTHO05D008451 8.5e-24 114.8 142 47.9
SGA_v2.0_scaffold166G38305 Striga asiatica HOM05D007009 ORTHO05D008451 1.1e-23 114.4 167 46.1
Haze_12109 Corylus avellana HOM05D007009 ORTHO05D008451 2.5e-23 113.2 159 44.0
ECA233G5592 Erigeron canadensis HOM05D007009 ORTHO05D008451 3.2e-23 112.8 157 42.7
Zm00001eb104690 Zea mays HOM05D007009 ORTHO05D008451 3.6e-22 109.4 167 43.7
vmacro01210 Vaccinium macrocarpon HOM05D007009 ORTHO05D008451 1.8e-21 107.1 305 30.5
unitig_8.g2944 Utricularia gibba HOM05D007009 ORTHO05D008451 6.8e-21 105.1 138 46.4
Lsat_1_v5_gn_8_161781 Lactuca sativa HOM05D007009 ORTHO05D008451 3.4e-20 102.8 186 38.7
BraA03t15512Z Brassica rapa HOM05D007009 ORTHO05D031827 1.3e-19 100.9 142 46.5
C03p84900 Brassica napus HOM05D000455 ORTHO05D008451 2.2e-19 100.1 77 66.2
BolC3t20782H Brassica oleracea HOM05D000455 ORTHO05D008451 2.2e-19 100.1 77 66.2
Mapoly0049s0134 Marchantia polymorpha HOM05D007009 ORTHO05D008451 4.5e-17 92.4 161 33.5
THA.LOC104822186 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 4.2e-15 85.9 210 39.5
CDE10G1217 Ceratophyllum demersum HOM05D007009 ORTHO05D008451 2.8e-14 83.2 153 39.2
CARHR292590 Cardamine hirsuta HOM05D007009 ORTHO05D008451 3.0e-13 79.7 67 68.7
Pp3c4_16120 Physcomitrium patens HOM05D007009 ORTHO05D008451 1.5e-12 77.4 164 33.5
BcaC07g38074 Brassica carinata HOM05D020738 ORTHO05D008451 4.4e-12 75.9 149 39.6
CSS0007469 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 3.1e-10 69.7 85 44.7
BcaB01g02975 Brassica carinata HOM05D020738 ORTHO05D008451 4.1e-10 69.3 68 54.4
MBI15_g31419_MAGBIO Magnolia biondii HOM05D007009 ORTHO05D008451 3.5e-09 66.2 113 40.7
BcaB08g34581 Brassica carinata HOM05D020738 ORTHO05D008451 1.3e-08 64.3 124 40.3
BolC9t54178H Brassica oleracea HOM05D020738 ORTHO05D031827 3.8e-08 62.8 123 35.8
BcaC04g23032 Brassica carinata HOM05D020738 ORTHO05D031827 1.2e-06 57.8 123 35.0
BcaB02g10960 Brassica carinata HOM05D000397 ORTHO05D000492 1.6e-06 57.4 79 50.6


User provided reference genes

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