Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 1.0e-179 633.3 311 100.0
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 4.0e-160 568.2 305 90.2
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 4.9e-150 534.6 306 85.9
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 4.2e-149 531.6 303 86.1
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 9.2e-149 530.4 309 83.8
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 1.4e-136 490.0 306 78.4
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 9.7e-98 360.9 200 86.0
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.4e-96 357.1 332 58.4
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.5e-95 353.6 304 60.5
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 7.7e-95 351.3 296 60.5
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.5e-93 346.3 344 54.9
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 4.4e-90 335.5 298 56.4
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 2.2e-89 333.2 296 59.1
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 2.2e-89 333.2 306 58.2
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.4e-88 330.5 302 57.6
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 2.4e-88 329.7 297 58.6
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 3.5e-87 325.9 305 57.0
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 4.5e-87 325.5 221 70.6
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 1.3e-86 323.9 292 58.2
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 5.0e-86 322.0 304 57.2
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 1.5e-85 320.5 295 56.9
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 4.2e-85 318.9 284 58.5
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 7.2e-85 318.2 304 54.6
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 7.2e-85 318.2 305 55.4
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.2e-84 317.4 307 56.0
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 1.6e-84 317.0 309 54.4
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 8.0e-84 314.7 307 53.7
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 1.0e-83 314.3 305 55.1
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 4.0e-83 312.4 272 57.4
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 4.0e-83 312.4 307 53.4
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 4.0e-83 312.4 272 57.4
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 5.7e-82 308.5 258 58.5
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 3.7e-81 305.8 268 58.2
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 1.1e-80 304.3 310 52.6
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 1.1e-80 304.3 303 53.5
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 1.2e-79 300.8 270 57.8
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 3.5e-79 299.3 263 57.4
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 7.7e-79 298.1 259 55.6
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 1.0e-78 297.7 257 58.0
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 1.7e-78 297.0 298 53.7
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 2.2e-78 296.6 269 57.2
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 2.2e-78 296.6 272 54.4
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 2.2e-78 296.6 258 57.0
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 2.2e-78 296.6 260 56.9
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 3.8e-78 295.8 261 58.2
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 5.0e-78 295.4 266 57.5
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 6.5e-78 295.0 262 58.0
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 8.5e-78 294.7 263 57.8
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.1e-77 294.3 299 54.8
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 1.5e-77 293.9 279 54.5
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.5e-77 293.9 301 54.2
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 1.9e-77 293.5 310 51.6
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 2.5e-77 293.1 263 55.9
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 3.2e-77 292.7 214 64.5
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 7.2e-77 291.6 259 55.2
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 7.2e-77 291.6 214 65.4
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 2.1e-76 290.0 265 54.7
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 3.6e-76 289.3 259 55.6
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 1.0e-75 287.7 268 57.1
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 1.4e-75 287.3 214 64.0
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 1.8e-75 287.0 214 64.0
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 5.2e-75 285.4 214 63.1
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 5.2e-75 285.4 256 57.4
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 8.8e-75 284.6 292 52.1
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 1.2e-74 284.3 262 57.3
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 1.2e-74 284.3 307 49.8
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 1.5e-74 283.9 214 63.1
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 3.4e-74 282.7 305 50.2
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 4.4e-74 282.3 218 61.9
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 4.4e-74 282.3 214 63.6
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 5.7e-74 282.0 269 52.4
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 7.5e-74 281.6 317 49.5
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 9.8e-74 281.2 212 62.3
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.7e-73 280.4 253 57.3
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 2.2e-73 280.0 219 62.1
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 2.8e-73 279.6 287 52.6
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 2.8e-73 279.6 295 51.5
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 6.3e-73 278.5 219 61.2
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 8.3e-73 278.1 259 53.3
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 1.4e-72 277.3 303 48.2
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 3.1e-72 276.2 263 54.0
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 4.1e-72 275.8 293 55.6
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 4.1e-72 275.8 264 55.7
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 4.1e-72 275.8 286 50.0
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 5.4e-72 275.4 294 49.7
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 7.0e-72 275.0 270 53.0
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 9.1e-72 274.6 293 54.9
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 9.1e-72 274.6 264 51.5
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 9.1e-72 274.6 277 52.0
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 1.6e-71 273.9 271 51.3
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 2.0e-71 273.5 249 53.4
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 2.0e-71 273.5 259 52.9
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 3.5e-71 272.7 272 51.5
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 4.5e-71 272.3 261 51.3
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 4.5e-71 272.3 276 51.4
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 5.9e-71 271.9 288 52.1
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 7.7e-71 271.6 311 47.9
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 7.7e-71 271.6 260 52.7
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 7.7e-71 271.6 270 51.9
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.3e-70 270.8 247 52.2
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 8.6e-70 268.1 265 51.3
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 1.1e-69 267.7 297 48.1
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 2.5e-69 266.5 315 46.0
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 4.2e-69 265.8 219 58.0
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 5.5e-69 265.4 263 51.0
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 1.2e-68 264.2 313 46.3
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 1.6e-68 263.8 265 50.2
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 1.6e-68 263.8 279 48.7
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 2.1e-68 263.5 240 53.8
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 2.8e-68 263.1 220 55.9
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 2.8e-68 263.1 263 51.7
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 3.6e-68 262.7 217 57.1
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 6.1e-68 261.9 244 52.0
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 1.4e-67 260.8 335 43.6
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 1.8e-67 260.4 335 43.3
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 3.0e-67 259.6 264 53.4
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 5.2e-67 258.8 310 49.7
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 5.2e-67 258.8 386 40.9
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 5.2e-67 258.8 221 56.6
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 6.8e-67 258.5 288 48.6
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 6.8e-67 258.5 317 46.1
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 1.2e-66 257.7 227 57.3
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.3e-65 254.2 298 46.0
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 3.7e-65 252.7 279 47.3
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 4.9e-65 252.3 264 50.8
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 3.2e-64 249.6 343 44.3
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 4.1e-64 249.2 273 46.5
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 3.5e-63 246.1 220 53.6
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 5.9e-63 245.4 223 56.5
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.0e-62 244.6 260 46.2
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 2.3e-62 243.4 324 42.9
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.9e-61 240.4 287 46.7
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.3e-61 239.6 299 49.5
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 7.3e-61 238.4 259 51.0
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 4.7e-60 235.7 341 40.2
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.4e-59 234.2 238 52.9
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 5.2e-59 232.3 239 53.1
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 2.0e-58 230.3 258 47.7
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 2.6e-58 229.9 146 76.7
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 4.4e-58 229.2 233 53.6
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 5.8e-58 228.8 197 58.9
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 6.2e-52 208.8 174 58.0
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 7.5e-50 201.8 205 48.8
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.4e-48 196.8 144 68.1
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.5e-45 186.8 182 56.0
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 1.2e-44 184.5 308 36.4
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 2.1e-44 183.7 167 55.7
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.8e-44 183.3 156 55.8
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 4.9e-41 172.6 220 45.9
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 2.7e-39 166.8 158 53.8
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.5e-37 161.0 130 58.5
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 4.3e-37 159.5 121 63.6
CARHR062470 Cardamine hirsuta HOM05D001860 ORTHO05D004922 4.4e-34 149.4 101 79.2
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 1.1e-32 144.8 120 60.0
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 1.9e-32 144.1 142 55.6
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 5.4e-32 142.5 145 46.9
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 1.2e-31 141.4 266 35.3
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 2.1e-31 140.6 230 39.1
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.6e-28 131.0 172 42.4
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 4.9e-25 119.4 251 32.7
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 6.4e-25 119.0 179 37.4
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 4.8e-20 102.8 85 60.0
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.7e-17 94.4 78 59.0
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.8e-14 84.3 90 47.8
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 2.3e-14 84.0 92 40.2
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 3.9e-14 83.2 84 44.0
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.9e-13 80.9 207 27.5
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 4.8e-12 76.3 185 32.4
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 5.3e-11 72.8 85 43.5
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 3.4e-10 70.1 77 49.4
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 7.6e-10 68.9 155 32.9
A07p35860 Brassica napus HOM05D001860 ORTHO05D004922 2.2e-09 67.4 69 55.1
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 2.2e-09 67.4 137 35.0
MCO11G161 Micromonas commoda HOM05D019459 ORTHO05D019626 8.7e-06 55.5 143 30.8


User provided reference genes

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