Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 1.1e-25 119.0 53 100.0
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 8.7e-23 109.4 51 92.2
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 1.1e-22 109.0 52 90.4
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 1.9e-22 108.2 51 92.2
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 3.1e-20 100.9 52 84.6
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 4.0e-20 100.5 52 82.7
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 5.3e-20 100.1 52 82.7
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 5.3e-20 100.1 52 82.7
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 5.3e-20 100.1 52 82.7
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 5.3e-20 100.1 52 82.7
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 5.3e-20 100.1 52 82.7
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 6.9e-20 99.8 51 84.3
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 6.9e-20 99.8 51 82.4
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 1.2e-19 99.0 52 82.7
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 2.6e-19 97.8 52 80.8
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 2.6e-19 97.8 52 80.8
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 3.4e-19 97.4 52 80.8
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 3.4e-19 97.4 52 80.8
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 3.4e-19 97.4 52 80.8
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 5.8e-19 96.7 51 80.4
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 7.6e-19 96.3 52 78.8
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 7.6e-19 96.3 52 78.8
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 7.6e-19 96.3 51 78.4
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 9.9e-19 95.9 52 78.8
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 1.7e-18 95.1 48 85.4
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 2.2e-18 94.7 48 85.4
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 2.9e-18 94.4 50 80.0
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 2.9e-18 94.4 52 78.8
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 6.4e-18 93.2 50 78.0
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 1.1e-17 92.4 51 74.5
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 1.4e-17 92.0 51 72.5
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 1.4e-17 92.0 51 74.5
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.4e-17 92.0 51 72.5
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.4e-17 92.0 51 72.5
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 1.4e-17 92.0 53 73.6
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 1.4e-17 92.0 51 72.5
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 1.9e-17 91.7 50 74.0
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 2.4e-17 91.3 52 71.2
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 3.2e-17 90.9 51 74.5
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 3.2e-17 90.9 48 79.2
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 3.2e-17 90.9 51 72.5
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 3.2e-17 90.9 51 72.5
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 3.2e-17 90.9 51 72.5
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 4.2e-17 90.5 52 69.2
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 4.2e-17 90.5 52 73.1
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 5.4e-17 90.1 50 74.0
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 5.4e-17 90.1 50 74.0
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 5.4e-17 90.1 50 74.0
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 5.4e-17 90.1 51 70.6
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 5.4e-17 90.1 51 70.6
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 5.4e-17 90.1 51 70.6
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 5.4e-17 90.1 52 71.2
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 5.4e-17 90.1 50 72.0
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 7.1e-17 89.7 52 69.2
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 7.1e-17 89.7 51 70.6
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 9.3e-17 89.4 44 86.4
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 9.3e-17 89.4 50 74.0
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 9.3e-17 89.4 52 71.2
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 1.2e-16 89.0 52 71.2
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 1.2e-16 89.0 48 79.2
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 1.6e-16 88.6 51 72.5
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 1.6e-16 88.6 42 83.3
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 1.6e-16 88.6 51 68.6
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 1.6e-16 88.6 51 72.5
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 2.1e-16 88.2 50 72.0
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 2.7e-16 87.8 42 85.7
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 2.7e-16 87.8 40 90.0
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 2.7e-16 87.8 51 68.6
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 2.7e-16 87.8 51 68.6
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 2.7e-16 87.8 51 68.6
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 2.7e-16 87.8 51 68.6
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 3.5e-16 87.4 44 81.8
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 3.5e-16 87.4 44 81.8
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 3.5e-16 87.4 49 71.4
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 3.5e-16 87.4 41 85.4
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 4.6e-16 87.0 41 87.8
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 6.0e-16 86.7 51 66.7
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 6.0e-16 86.7 50 70.0
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 7.9e-16 86.3 48 72.9
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 7.9e-16 86.3 45 80.0
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 7.9e-16 86.3 52 67.3
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 7.9e-16 86.3 52 67.3
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 7.9e-16 86.3 52 67.3
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 1.0e-15 85.9 45 80.0
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.0e-15 85.9 45 80.0
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.0e-15 85.9 45 80.0
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 1.3e-15 85.5 42 83.3
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 1.3e-15 85.5 52 69.2
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 1.8e-15 85.1 42 81.0
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 1.8e-15 85.1 40 87.5
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 3.0e-15 84.3 51 68.6
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 6.7e-15 83.2 41 82.9
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 8.7e-15 82.8 45 77.8
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 8.7e-15 82.8 51 66.7
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.1e-14 82.4 39 87.2
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.1e-14 82.4 39 87.2
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.1e-14 82.4 52 65.4
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.1e-14 82.4 41 80.5
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 1.1e-14 82.4 41 80.5
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 1.1e-14 82.4 49 67.3
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 1.5e-14 82.0 39 84.6
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 1.5e-14 82.0 51 62.7
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 1.9e-14 81.6 51 68.6
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 2.5e-14 81.3 39 87.2
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 2.5e-14 81.3 39 87.2
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 3.3e-14 80.9 51 64.7
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 3.3e-14 80.9 49 67.3
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 4.3e-14 80.5 51 64.7
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 5.6e-14 80.1 39 84.6
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 5.6e-14 80.1 42 73.8
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 5.6e-14 80.1 42 73.8
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 7.4e-14 79.7 40 77.5
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 9.6e-14 79.3 52 63.5
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 9.6e-14 79.3 39 84.6
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 1.3e-13 79.0 40 77.5
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 1.6e-13 78.6 42 71.4
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 1.6e-13 78.6 42 71.4
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 1.6e-13 78.6 42 71.4
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 6.2e-13 76.6 53 66.0
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 8.1e-13 76.3 40 72.5
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 8.1e-13 76.3 52 61.5
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 4.5e-11 70.5 45 62.2
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 6.4e-10 66.6 42 61.9
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 4.6e-08 60.5 68 45.6
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 4.6e-08 60.5 42 52.4
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 6.0e-08 60.1 41 48.8
C06p40430 Brassica napus HOM05D030737 ORTHO05D028024 1.8e-07 58.5 35 68.6
BolC6t39389H Brassica oleracea HOM05D030737 ORTHO05D028024 1.8e-07 58.5 35 68.6
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 1.8e-07 58.5 40 57.5
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 2.3e-07 58.2 38 63.2
Ah.15g093720 Amaranthus hybridus HOM05D000143 ORTHO05D000072 6.7e-07 56.6 26 92.3
A07p35770 Brassica napus HOM05D030737 ORTHO05D028024 6.7e-07 56.6 30 70.0
vmacro01352 Vaccinium macrocarpon HOM05D004542 ORTHO05D005380 6.7e-07 56.6 52 51.9
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 8.7e-07 56.2 26 92.3
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 4.3e-06 53.9 26 84.6
Nitab4.5_0001726g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 7.4e-06 53.1 27 81.5


User provided reference genes

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