Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1567 Capsella rubella HOM05D008249 ORTHO05D010427 3.1e-50 201.4 99 100.0
AT1G69050 Arabidopsis thaliana HOM05D008249 ORTHO05D010427 2.7e-41 171.8 99 90.9
AL2G28100 Arabidopsis lyrata HOM05D008249 ORTHO05D010427 4.5e-41 171.0 99 90.9
Thhalv10019523m.g Eutrema salsugineum HOM05D008249 ORTHO05D010427 1.5e-39 166.0 99 88.9
A02p15590 Brassica napus HOM05D008249 ORTHO05D010427 5.4e-34 147.5 99 78.8
C02p25760 Brassica napus HOM05D008249 ORTHO05D010427 5.4e-34 147.5 99 78.8
BolC2t08645H Brassica oleracea HOM05D008249 ORTHO05D010427 5.4e-34 147.5 99 78.8
BraA02t06620Z Brassica rapa HOM05D008249 ORTHO05D010427 5.4e-34 147.5 99 78.8
BraA07t31135Z Brassica rapa HOM05D008249 ORTHO05D010427 9.2e-34 146.7 100 80.0
BcaB03g15456 Brassica carinata HOM05D008249 ORTHO05D010427 2.0e-33 145.6 99 78.8
A07p35440 Brassica napus HOM05D008249 ORTHO05D010427 2.7e-33 145.2 100 79.0
BcaC08g46348 Brassica carinata HOM05D008249 ORTHO05D010427 1.7e-32 142.5 100 78.0
BolC6t38825H Brassica oleracea HOM05D008249 ORTHO05D010427 1.7e-32 142.5 99 78.8
BraA07t30800Z Brassica rapa HOM05D008249 ORTHO05D010427 2.9e-32 141.7 99 75.8
A07p31730 Brassica napus HOM05D008249 ORTHO05D010427 1.5e-31 139.4 99 74.7
BcaC08g45919 Brassica carinata HOM05D008249 ORTHO05D010427 5.6e-31 137.5 91 81.3
BcaC08g46347 Brassica carinata HOM05D008249 ORTHO05D010427 5.6e-31 137.5 100 78.0
C06p37200 Brassica napus HOM05D008249 ORTHO05D010427 5.6e-31 137.5 91 81.3
BolC6t39354H Brassica oleracea HOM05D008249 ORTHO05D010427 5.6e-31 137.5 100 78.0
CARHR061920 Cardamine hirsuta HOM05D008249 ORTHO05D010427 4.7e-30 134.4 101 71.3
BcaC03g15029 Brassica carinata HOM05D008249 ORTHO05D010427 9.8e-28 126.7 83 80.7
THA.LOC104822892 Tarenaya hassleriana HOM05D008249 ORTHO05D010427 2.7e-25 118.6 98 64.3
Aa31LG4G11760 Aethionema arabicum HOM05D008249 ORTHO05D010427 1.7e-24 115.9 92 66.3
THA.LOC109116338 Tarenaya hassleriana HOM05D008249 ORTHO05D010427 1.8e-21 105.9 118 56.8
BcaB03g15873 Brassica carinata HOM05D008249 ORTHO05D010427 5.2e-21 104.4 78 74.4
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 2.3e-16 89.0 48 85.4
Manes.01G024800 Manihot esculenta HOM05D008249 ORTHO05D010427 6.4e-11 70.9 104 45.2
Manes.05G112900 Manihot esculenta HOM05D008249 ORTHO05D010427 4.1e-10 68.2 99 45.5
Haze_11870 Corylus avellana HOM05D008249 ORTHO05D010427 7.1e-10 67.4 97 49.5
VMungo1215G0100 Vigna mungo HOM05D008249 ORTHO05D010427 1.6e-09 66.2 98 44.9
Ciclev10033881m.g Citrus clementina HOM05D008249 ORTHO05D010427 2.7e-09 65.5 108 45.4
Potri.008G109150 Populus trichocarpa HOM05D008249 ORTHO05D010427 7.8e-09 63.9 78 48.7
Potri.010G138700 Populus trichocarpa HOM05D008249 ORTHO05D010427 7.8e-09 63.9 85 47.1
Potri.T139662 Populus trichocarpa HOM05D008249 ORTHO05D010427 7.8e-09 63.9 78 48.7
Prupe.1G293000 Prunus persica HOM05D008249 ORTHO05D010427 1.3e-08 63.2 92 48.9
Actinidia13403 Actinidia chinensis HOM05D000485 ORTHO05D000341 3.0e-08 62.0 87 44.8
RcHm_v2.0_Chr4g0437411 Rosa chinensis HOM05D008249 ORTHO05D010427 3.9e-08 61.6 94 44.7
Sabra10G0107000 Salix brachista HOM05D008249 ORTHO05D010427 6.6e-08 60.8 85 45.9
CiPaw.05G122300 Carya illinoinensis HOM05D008249 ORTHO05D010427 1.1e-07 60.1 114 44.7
Gohir.D02G131400 Gossypium hirsutum HOM05D008249 ORTHO05D010427 4.3e-07 58.2 99 40.4
Thecc.02G323600 Theobroma cacao HOM05D008249 ORTHO05D010427 4.3e-07 58.2 109 45.0
Gorai.005G147300 Gossypium raimondii HOM05D008249 ORTHO05D010427 5.6e-07 57.8 99 40.4
COL.COLO4_27817 Corchorus olitorius HOM05D008249 ORTHO05D010427 7.3e-07 57.4 90 43.3
Gohir.A03G106200 Gossypium hirsutum HOM05D008249 ORTHO05D010427 7.3e-07 57.4 94 41.5
Medtr5g047220 Medicago truncatula HOM05D008249 ORTHO05D010427 7.3e-07 57.4 87 43.7
ClCG08G010570 Citrullus lanatus HOM05D008249 ORTHO05D010427 9.5e-07 57.0 91 47.3
Lalb_Chr17g0341441 Lupinus albus HOM05D008249 ORTHO05D010427 9.5e-07 57.0 101 40.6
Phvul.003G038500 Phaseolus vulgaris HOM05D008249 ORTHO05D010427 1.6e-06 56.2 88 40.9
Glyma.02G122400 Glycine max HOM05D008249 ORTHO05D010427 6.2e-06 54.3 103 37.9
TPR.G38465 Trifolium pratense HOM05D008249 ORTHO05D010427 6.2e-06 54.3 91 39.6
Glyma.01G064500 Glycine max HOM05D008249 ORTHO05D010427 8.1e-06 53.9 102 38.2


User provided reference genes

Program Settings