Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1522 Capsella rubella HOM05D007420 ORTHO05D009353 8.3e-35 149.8 76 100.0
AT1G68680 Arabidopsis thaliana HOM05D007420 ORTHO05D009353 4.6e-33 144.1 76 96.1
CARHR061490 Cardamine hirsuta HOM05D007420 ORTHO05D009353 3.0e-32 141.4 76 93.4
AL2G27600 Arabidopsis lyrata HOM05D007420 ORTHO05D009353 1.1e-31 139.4 76 93.4
Sp5g23780 Schrenkiella parvula HOM05D007420 ORTHO05D009353 1.1e-31 139.4 76 93.4
Thhalv10019233m.g Eutrema salsugineum HOM05D007420 ORTHO05D009353 3.3e-31 137.9 76 92.1
BolC6t38847H Brassica oleracea HOM05D007420 ORTHO05D009353 1.2e-30 136.0 76 90.8
C06p37440 Brassica napus HOM05D007420 ORTHO05D032647 1.2e-25 119.4 69 87.0
THA.LOC104809007 Tarenaya hassleriana HOM05D007420 ORTHO05D009353 1.2e-25 119.4 80 77.5
BcaB03g15440 Brassica carinata HOM05D007420 ORTHO05D009353 2.0e-25 118.6 67 89.6
BcaC08g45947 Brassica carinata HOM05D007420 ORTHO05D009353 2.0e-25 118.6 67 89.6
BraA07t30816Z Brassica rapa HOM05D007420 ORTHO05D009353 7.8e-25 116.7 66 87.9
CANSAT56G4260 Cannabis sativa HOM05D007420 ORTHO05D009353 1.0e-24 116.3 78 78.2
Atru.chr7.1239 Acer truncatum HOM05D007420 ORTHO05D009353 1.3e-24 115.9 78 76.9
Potri.011G024500 Populus trichocarpa HOM05D007420 ORTHO05D009353 1.3e-24 115.9 80 73.8
A07p31870 Brassica napus HOM05D007420 ORTHO05D009353 1.7e-24 115.5 69 84.1
Eucgr.C01109 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.7e-24 115.5 78 78.2
Phvul.003G161000 Phaseolus vulgaris HOM05D007420 ORTHO05D009353 6.6e-24 113.6 78 73.1
Oeu021594.1 Olea europaea HOM05D007420 ORTHO05D009353 1.1e-23 112.8 77 77.9
CiPaw.03G239800 Carya illinoinensis HOM05D007420 ORTHO05D009353 1.5e-23 112.5 78 75.6
BcaB03g15439 Brassica carinata HOM05D007420 ORTHO05D009353 1.9e-23 112.1 66 89.4
Aa31sc12G90 Aethionema arabicum HOM05D007420 ORTHO05D009353 5.6e-23 110.5 74 77.0
SalBow1G2150 Salvia bowleyana HOM05D007420 ORTHO05D009353 5.6e-23 110.5 70 77.1
Eucgr.C01288 Eucalyptus grandis HOM05D007420 ORTHO05D009353 7.3e-23 110.2 69 82.6
Sed0006703 Sechium edule HOM05D007420 ORTHO05D009353 9.5e-23 109.8 77 74.0
ClCG11G002810 Citrullus lanatus HOM05D007420 ORTHO05D009353 2.8e-22 108.2 76 71.1
Migut.L01525 Erythranthe guttata HOM05D007420 ORTHO05D009353 4.7e-22 107.5 71 76.1
Manes.06G052500 Manihot esculenta HOM05D007420 ORTHO05D009353 4.7e-22 107.5 78 70.5
Cc06_g08970 Coffea canephora HOM05D007420 ORTHO05D009353 8.1e-22 106.7 73 72.6
TWI32G1185 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 1.4e-21 105.9 80 70.0
MD15G1177800 Malus domestica HOM05D007420 ORTHO05D009353 3.1e-21 104.8 74 70.3
Psat4g040560 Pisum sativum HOM05D007420 ORTHO05D009353 3.1e-21 104.8 79 69.6
Nn8g39361 Nelumbo nucifera HOM05D007420 ORTHO05D009353 5.2e-21 104.0 78 69.2
TPR.G9078 Trifolium pratense HOM05D007420 ORTHO05D009353 5.2e-21 104.0 77 72.7
HanXRQChr03g0062071 Helianthus annuus HOM05D007420 ORTHO05D009353 6.8e-21 103.6 77 70.1
Gohir.A06G058200 Gossypium hirsutum HOM05D007420 ORTHO05D009353 8.9e-21 103.2 78 69.2
Gohir.D06G056500 Gossypium hirsutum HOM05D007420 ORTHO05D009353 8.9e-21 103.2 78 69.2
Lalb_Chr13g0302091 Lupinus albus HOM05D007420 ORTHO05D009353 1.2e-20 102.8 78 69.2
CsaV3_2G002630 Cucumis sativus L. HOM05D007420 ORTHO05D009353 1.5e-20 102.4 71 70.4
TWI34G1269 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 1.5e-20 102.4 80 68.8
ECA240G1805 Erigeron canadensis HOM05D007420 ORTHO05D009353 2.6e-20 101.7 73 69.9
PGR102G0502 Punica granatum HOM05D007420 ORTHO05D009353 4.4e-20 100.9 74 63.5
RcHm_v2.0_Chr2g0089401 Rosa chinensis HOM05D007420 ORTHO05D009353 9.9e-20 99.8 77 67.5
CAN.G1424.4 Capsicum annuum HOM05D007420 ORTHO05D009353 1.3e-19 99.4 76 65.8
CDE01G0426 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 1.3e-19 99.4 77 67.5
Nn2g11931 Nelumbo nucifera HOM05D007420 ORTHO05D009353 1.7e-19 99.0 78 66.7
Eucgr.C01298 Eucalyptus grandis HOM05D007420 ORTHO05D009353 3.7e-19 97.8 68 76.5
Eucgr.L02717 Eucalyptus grandis HOM05D007420 ORTHO05D009353 3.7e-19 97.8 68 76.5
Haze_25622 Corylus avellana HOM05D007420 ORTHO05D009353 4.9e-19 97.4 71 70.4
PSO170G5167 Papaver somniferum HOM05D007420 ORTHO05D009353 8.3e-19 96.7 61 73.8
QL02p087339 Quercus lobata HOM05D007420 ORTHO05D009353 1.1e-18 96.3 69 72.5
CDE03G0079 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 1.4e-18 95.9 77 66.2
Sopen07g001360 Solanum pennellii HOM05D007420 ORTHO05D009353 3.2e-18 94.7 63 73.0
Hma1.2p1_0018F.1_g012820 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 4.1e-18 94.4 67 70.1
Solyc07g005430.3 Solanum lycopersicum HOM05D007420 ORTHO05D009353 4.1e-18 94.4 63 73.0
Duzib150G1214 Durio zibethinus HOM05D007420 ORTHO05D009353 5.4e-18 94.0 59 76.3
Glyma.05G010400 Glycine max HOM05D007420 ORTHO05D009353 5.4e-18 94.0 68 72.1
Cfa003340 Carpinus fangiana HOM05D007420 ORTHO05D009353 9.2e-18 93.2 68 72.1
Actinidia22015 Actinidia chinensis HOM05D007420 ORTHO05D009353 1.2e-17 92.8 68 67.6
Pp3c11_6600 Physcomitrium patens HOM05D007420 ORTHO05D009353 1.2e-17 92.8 63 68.3
arahy.Tifrunner.gnm1.ann1.QR7ILI Arachis hypogaea HOM05D007420 ORTHO05D009353 3.5e-17 91.3 64 75.0
arahy.Tifrunner.gnm1.ann1.XPL4AE Arachis hypogaea HOM05D007420 ORTHO05D009353 3.5e-17 91.3 64 75.0
EL10Ac8g18588 Beta vulgaris HOM05D007420 ORTHO05D009353 4.6e-17 90.9 77 62.3
GSVIVG01015481001 Vitis vinifera HOM05D007420 ORTHO05D009353 4.6e-17 90.9 78 60.3
FvH4_1g03930 Fragaria vesca HOM05D007420 ORTHO05D009353 6.0e-17 90.5 72 63.9
Prupe.7G237700 Prunus persica HOM05D007420 ORTHO05D009353 6.0e-17 90.5 75 64.0
Ciclev10009973m.g Citrus clementina HOM05D007420 ORTHO05D009353 1.7e-16 89.0 72 63.9
Gorai.010G066200 Gossypium raimondii HOM05D007420 ORTHO05D009353 1.7e-16 89.0 72 66.7
Thecc.09G120400 Theobroma cacao HOM05D007420 ORTHO05D009353 2.3e-16 88.6 68 69.1
Hma1.2p1_0018F.1_g012830 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 3.0e-16 88.2 58 70.7
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 3.0e-16 88.2 70 65.7
CSS0016223 Camellia sinensis var. sinensis HOM05D007420 ORTHO05D009353 6.6e-16 87.0 68 64.7
Lj4g0001906 Lotus japonicus HOM05D007420 ORTHO05D009353 8.6e-16 86.7 67 65.7
Dinv36572 Davidia involucrata HOM05D007420 ORTHO05D009353 1.1e-15 86.3 72 62.5
unitig_85.g27256 Utricularia gibba HOM05D000953 ORTHO05D000231 1.1e-15 86.3 54 77.8
MELO3C004528.2 Cucumis melo HOM05D007420 ORTHO05D009353 3.3e-15 84.7 61 67.2
Peaxi162Scf00361g00611 Petunia axillaris HOM05D007420 ORTHO05D009353 3.3e-15 84.7 66 65.2
SalBow6G6280 Salvia bowleyana HOM05D007420 ORTHO05D009353 3.3e-15 84.7 63 71.4
Mapoly0048s0106 Marchantia polymorpha HOM05D007420 ORTHO05D009353 4.3e-15 84.3 58 70.7
FAN22G2307 Fragaria x ananassa HOM05D022909 ORTHO05D009353 5.6e-15 84.0 67 67.2
FAN23G1905 Fragaria x ananassa HOM05D007420 ORTHO05D009353 5.6e-15 84.0 67 67.2
FAN26G1322 Fragaria x ananassa HOM05D007420 ORTHO05D009353 5.6e-15 84.0 67 67.2
FAN28G1248 Fragaria x ananassa HOM05D007420 ORTHO05D009353 5.6e-15 84.0 67 67.2
AagrBONN_evm.TU.Sc2ySwM_362.2614 Anthoceros agrestis HOM05D007420 ORTHO05D009353 7.3e-15 83.6 63 65.1
DCAR_014860 Daucus carota HOM05D007420 ORTHO05D009353 7.3e-15 83.6 68 64.7
MD02G1037600 Malus domestica HOM05D007420 ORTHO05D009353 1.2e-14 82.8 63 63.5
vmacro20648 Vaccinium macrocarpon HOM05D007420 ORTHO05D009353 1.6e-14 82.4 68 64.7
Nitab4.5_0000750g0050 Nicotiana tabacum HOM05D007420 ORTHO05D009353 2.1e-14 82.0 66 62.1
Nitab4.5_0001193g0010 Nicotiana tabacum HOM05D007420 ORTHO05D009353 2.1e-14 82.0 66 62.1
Sc14g0000270 Simmondsia chinensis HOM05D007420 ORTHO05D009353 2.8e-14 81.6 74 60.8
SEGI_24866 Sequoiadendron giganteum HOM05D007420 ORTHO05D009353 3.6e-14 81.3 77 54.5
Zm00001eb283090 Zea mays HOM05D007420 ORTHO05D009353 8.1e-14 80.1 67 61.2
AUR62033448 Chenopodium quinoa HOM05D007420 ORTHO05D009353 1.1e-13 79.7 70 62.9
Hund09157 Selenicereus undatus HOM05D007420 ORTHO05D009353 1.4e-13 79.3 68 66.2
FAN19G3121 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.8e-13 79.0 55 69.1
HPP92_024085 Vanilla planifolia HOM05D007420 ORTHO05D009353 5.2e-13 77.4 68 63.2
SHI28897 Sapria himalayana HOM05D007420 ORTHO05D009353 2.6e-12 75.1 66 59.1
CBR_g3296 Chara braunii HOM05D007420 ORTHO05D009353 1.4e-10 69.3 74 47.3
PGSC0003DMG401011174 Solanum tuberosum HOM05D007420 ORTHO05D009353 7.1e-10 67.0 85 49.4
MBI01_g34140_MAGBIO Magnolia biondii HOM05D007420 ORTHO05D009353 9.2e-10 66.6 43 72.1
Os05g0176600 Oryza sativa ssp. japonica HOM05D007420 ORTHO05D009353 1.7e-08 62.4 43 72.1
Glyma.13G033951 Glycine max HOM05D007420 ORTHO05D009353 1.1e-07 59.7 37 75.7
MCO15G341 Micromonas commoda HOM05D007420 ORTHO05D009353 7.3e-07 57.0 61 45.9
Eucgr.C01292 Eucalyptus grandis HOM05D007420 ORTHO05D009353 3.6e-06 54.7 30 86.7
BcaB03g15444 Brassica carinata HOM05D007420 ORTHO05D009353 6.2e-06 53.9 34 85.3


User provided reference genes

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