Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1501 Capsella rubella HOM05D007757 ORTHO05D009619 1.4e-31 139.4 94 100.0
AT1G68500 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 3.3e-25 118.2 94 78.7
BcaB05g24389 Brassica carinata HOM05D007757 ORTHO05D009619 1.5e-22 109.4 57 78.9
Sp5g23570 Schrenkiella parvula HOM05D007757 ORTHO05D009619 3.4e-22 108.2 94 63.8
BcaC08g46271 Brassica carinata HOM05D007757 ORTHO05D009619 4.5e-22 107.8 57 77.2
A07p34900 Brassica napus HOM05D007757 ORTHO05D009619 5.8e-22 107.5 94 54.3
C06p41430 Brassica napus HOM05D007757 ORTHO05D009619 5.8e-22 107.5 94 54.3
BolC6t39280H Brassica oleracea HOM05D007757 ORTHO05D009619 5.8e-22 107.5 94 54.3
BraA02t06576Z Brassica rapa HOM05D007757 ORTHO05D009619 7.6e-22 107.1 57 77.2
BcaB03g15824 Brassica carinata HOM05D007757 ORTHO05D009619 1.0e-21 106.7 57 75.4
BcaC03g14960 Brassica carinata HOM05D007757 ORTHO05D009619 2.2e-21 105.5 57 75.4
C02p24780 Brassica napus HOM05D007757 ORTHO05D009619 2.2e-21 105.5 57 75.4
BolC2t08570H Brassica oleracea HOM05D007757 ORTHO05D009619 2.2e-21 105.5 57 75.4
A02p15100 Brassica napus HOM05D007757 ORTHO05D009619 3.8e-21 104.8 57 75.4
AL2G27370 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 6.5e-21 104.0 46 95.7
Thhalv10019384m.g Eutrema salsugineum HOM05D007757 ORTHO05D009619 3.5e-19 98.2 47 85.1
CARHR061280 Cardamine hirsuta HOM05D007757 ORTHO05D009619 1.3e-18 96.3 46 84.8
THA.LOC104800008 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 1.6e-16 89.4 47 74.5
THA.LOC104821934 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 4.8e-16 87.8 47 70.2
Cpa.g.sc1.36 Carica papaya HOM05D007757 ORTHO05D009619 1.0e-13 80.1 52 61.5
CARHR026040 Cardamine hirsuta HOM05D007757 ORTHO05D009619 2.9e-13 78.6 49 71.4
AT1G25422 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 8.5e-13 77.0 52 63.5
Duzib248G1397 Durio zibethinus HOM05D007757 ORTHO05D009619 3.2e-12 75.1 52 57.7
CiPaw.15G085600 Carya illinoinensis HOM05D007757 ORTHO05D009619 4.2e-12 74.7 53 60.4
AL1G39890 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 5.5e-12 74.3 46 67.4
Haze_17487 Corylus avellana HOM05D007757 ORTHO05D009619 5.5e-12 74.3 54 57.4
TWI75G0183 Tripterygium wilfordii HOM05D007757 ORTHO05D009619 9.4e-12 73.6 52 59.6
COL.COLO4_37757 Corchorus olitorius HOM05D007757 ORTHO05D009619 1.2e-11 73.2 52 57.7
Gorai.002G217900 Gossypium raimondii HOM05D007757 ORTHO05D009619 1.2e-11 73.2 41 63.4
Gohir.D01G175600 Gossypium hirsutum HOM05D007757 ORTHO05D009619 2.1e-11 72.4 41 63.4
Prupe.1G311500 Prunus persica HOM05D007757 ORTHO05D009619 2.1e-11 72.4 53 56.6
Thecc.02G230200 Theobroma cacao HOM05D007757 ORTHO05D009619 4.6e-11 71.2 52 55.8
Actinidia16654 Actinidia chinensis HOM05D007757 ORTHO05D009619 1.8e-10 69.3 52 46.2
TPR.G1503 Trifolium pratense HOM05D007757 ORTHO05D009619 2.3e-10 68.9 52 51.9
Potri.010G124700 Populus trichocarpa HOM05D007757 ORTHO05D009619 3.0e-10 68.6 59 49.2
Carub.0001s2507 Capsella rubella HOM05D007757 ORTHO05D009619 5.1e-10 67.8 39 71.8
BcaC05g26671 Brassica carinata HOM05D007757 ORTHO05D009619 6.7e-10 67.4 59 54.2
Manes.06G067700 Manihot esculenta HOM05D007757 ORTHO05D009619 6.7e-10 67.4 52 50.0
Sabra10G0094600 Salix brachista HOM05D007757 ORTHO05D009619 6.7e-10 67.4 53 50.9
BcaB03g14042 Brassica carinata HOM05D007757 ORTHO05D009619 8.8e-10 67.0 42 66.7
BcaC06g35205 Brassica carinata HOM05D007757 ORTHO05D009619 8.8e-10 67.0 42 66.7
A07p12600 Brassica napus HOM05D007757 ORTHO05D009619 8.8e-10 67.0 42 66.7
C07p18700 Brassica napus HOM05D007757 ORTHO05D009619 8.8e-10 67.0 42 66.7
BolC7t42380H Brassica oleracea HOM05D007757 ORTHO05D009619 8.8e-10 67.0 42 66.7
BraA07t29038Z Brassica rapa HOM05D007757 ORTHO05D009619 8.8e-10 67.0 42 66.7
Sp1g22790 Schrenkiella parvula HOM05D007757 ORTHO05D009619 1.1e-09 66.6 57 52.6
MD13G1041700 Malus domestica HOM05D007757 ORTHO05D009619 2.0e-09 65.9 54 51.9
Medtr1g110790 Medicago truncatula HOM05D007757 ORTHO05D009619 2.5e-09 65.5 53 50.9
BraA09t39435Z Brassica rapa HOM05D007757 ORTHO05D009619 5.7e-09 64.3 58 50.0
Lalb_Chr02g0145961 Lupinus albus HOM05D007757 ORTHO05D009619 5.7e-09 64.3 50 52.0
Peaxi162Scf00382g00073 Petunia axillaris HOM05D007757 ORTHO05D009619 5.7e-09 64.3 39 56.4
Actinidia14892 Actinidia chinensis HOM05D007757 ORTHO05D009619 7.4e-09 63.9 41 48.8
BcaC05g26463 Brassica carinata HOM05D007757 ORTHO05D009619 9.7e-09 63.5 42 61.9
A09p39320 Brassica napus HOM05D007757 ORTHO05D009619 9.7e-09 63.5 42 61.9
C05p25050 Brassica napus HOM05D007757 ORTHO05D009619 9.7e-09 63.5 42 61.9
BolC5t31238H Brassica oleracea HOM05D007757 ORTHO05D009619 9.7e-09 63.5 42 61.9
Phvul.007G027400 Phaseolus vulgaris HOM05D007757 ORTHO05D009619 9.7e-09 63.5 48 54.2
Cc11_g10120 Coffea canephora HOM05D007757 ORTHO05D009619 1.3e-08 63.2 55 38.2
VMungo0720G1194 Vigna mungo HOM05D007757 ORTHO05D009619 1.7e-08 62.8 48 52.1
CAN.G610.82 Capsicum annuum HOM05D007757 ORTHO05D009619 2.2e-08 62.4 41 51.2
DCAR_030156 Daucus carota HOM05D007757 ORTHO05D009619 2.2e-08 62.4 56 46.4
Sopen05g005100 Solanum pennellii HOM05D007757 ORTHO05D009619 2.2e-08 62.4 44 47.7
Ca_11172_v3 Cicer arietinum L. HOM05D007757 ORTHO05D009619 2.8e-08 62.0 50 48.0
Nitab4.5_0000791g0090 Nicotiana tabacum HOM05D007757 ORTHO05D009619 3.7e-08 61.6 39 53.8
Solyc05g009340.1 Solanum lycopersicum HOM05D007757 ORTHO05D009619 3.7e-08 61.6 45 46.7
Peaxi162Scf00382g00086 Petunia axillaris HOM05D007757 ORTHO05D009619 6.3e-08 60.8 39 51.3
Migut.E00343 Erythranthe guttata HOM05D007757 ORTHO05D009619 8.2e-08 60.5 45 46.7
Gohir.D04G138100 Gossypium hirsutum HOM05D007757 ORTHO05D009619 8.2e-08 60.5 54 46.3
Gorai.012G123000 Gossypium raimondii HOM05D007757 ORTHO05D009619 8.2e-08 60.5 54 46.3
Lalb_Chr06g0166051 Lupinus albus HOM05D007757 ORTHO05D009619 8.2e-08 60.5 50 50.0
Psat6g227960 Pisum sativum HOM05D007757 ORTHO05D009619 8.2e-08 60.5 41 53.7
RcHm_v2.0_Chr4g0435141 Rosa chinensis HOM05D007757 ORTHO05D009619 8.2e-08 60.5 54 50.0
PGSC0003DMG400014580 Solanum tuberosum HOM05D007757 ORTHO05D009619 8.2e-08 60.5 39 51.3
FvH4_4g27340 Fragaria vesca HOM05D007757 ORTHO05D009619 1.1e-07 60.1 55 47.3
FAN12G3266 Fragaria x ananassa HOM05D007757 ORTHO05D009619 1.1e-07 60.1 55 47.3
FAN12G3307 Fragaria x ananassa HOM05D007757 ORTHO05D009619 1.1e-07 60.1 55 47.3
MD16G1042600 Malus domestica HOM05D007757 ORTHO05D009619 1.1e-07 60.1 59 44.1
FAN07G0332 Fragaria x ananassa HOM05D007757 ORTHO05D009619 1.4e-07 59.7 55 47.3
Glyma.10G274100 Glycine max HOM05D007757 ORTHO05D009619 2.4e-07 58.9 41 51.2
Glyma.20G115900 Glycine max HOM05D007757 ORTHO05D009619 2.4e-07 58.9 41 51.2
MSTRG.2233 Avicennia marina HOM05D007757 ORTHO05D009619 5.3e-07 57.8 55 43.6
CANSAT01G0578 Cannabis sativa HOM05D007757 ORTHO05D009619 2.6e-06 55.5 47 51.1


User provided reference genes

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