Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1680.6 838 100.0
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1610.1 839 95.9
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1602.0 839 95.2
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1575.8 839 93.3
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1568.5 839 93.0
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1566.2 839 92.6
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1560.0 840 92.0
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1551.2 846 91.4
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1548.9 846 91.3
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1547.7 846 91.0
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1547.7 839 91.5
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1468.8 839 86.5
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1456.4 825 89.0
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1432.2 767 92.3
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1352.8 839 79.5
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1350.1 838 79.5
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1338.2 839 78.4
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1337.0 839 78.4
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1337.0 839 78.8
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1335.9 839 77.7
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1335.1 843 78.8
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1330.1 839 78.1
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1330.1 839 78.4
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1328.9 839 78.3
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1327.8 839 78.5
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1326.6 839 78.1
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1323.9 839 78.3
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1323.9 843 77.9
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1322.8 869 76.6
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1321.6 839 77.5
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1320.4 840 78.1
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1317.0 839 77.4
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1315.8 839 77.9
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1315.1 839 77.7
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1312.7 839 77.0
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1312.0 839 77.5
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1310.0 839 76.4
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1307.7 840 77.0
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1306.6 871 74.4
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1306.6 839 76.6
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1305.8 840 77.1
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1305.8 840 77.1
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1305.0 840 77.7
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1304.7 839 76.8
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1302.0 859 76.1
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1301.2 838 76.4
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1300.0 839 77.1
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1299.3 838 76.5
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1296.6 827 77.6
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1296.2 838 76.8
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1295.0 838 76.4
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1294.6 839 76.4
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1294.3 839 76.8
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1294.3 839 75.9
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1291.9 838 77.1
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1287.3 838 76.7
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1286.2 839 76.3
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1285.4 831 76.8
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1285.0 839 76.5
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1284.2 841 75.0
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1283.5 846 76.1
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1281.9 841 75.7
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1279.6 839 75.2
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1279.2 839 75.8
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1279.2 844 74.9
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1278.1 839 75.7
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1275.0 838 75.8
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1274.2 839 74.7
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1273.1 916 71.3
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1272.3 839 74.7
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1271.5 912 70.9
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1266.9 845 75.7
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1266.9 839 75.8
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1263.8 840 74.8
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1262.3 839 75.3
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1262.3 905 70.9
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1260.0 968 67.7
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1258.4 912 70.5
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1250.3 859 72.9
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1241.5 852 73.7
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1226.8 765 78.6
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1221.1 842 72.8
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1219.1 838 74.1
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1209.9 782 75.7
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1204.9 827 72.8
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1201.0 868 70.3
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1196.0 842 72.1
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1185.2 839 71.4
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1184.9 777 75.8
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1182.9 752 77.9
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1182.9 766 76.2
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1177.9 839 71.9
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1163.7 840 69.0
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1149.4 859 67.2
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1146.7 789 72.9
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1134.8 806 68.7
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1116.7 844 66.7
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1109.4 749 73.7
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1103.6 696 78.3
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 0.0e+00 1088.9 848 65.3
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1078.2 694 76.9
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1077.4 840 65.1
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1076.6 854 64.5
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 5.7e-312 1074.3 839 66.3
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 3.3e-310 1068.1 839 64.0
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 1.0e-282 976.9 654 73.9
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 8.3e-261 904.0 846 58.9
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 3.7e-253 878.6 642 70.1
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 2.2e-237 826.2 543 74.2
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 1.7e-213 746.9 514 71.4
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 6.5e-197 691.8 418 81.3
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 1.0e-165 588.2 329 88.1
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 4.9e-120 436.4 254 86.2
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 2.2e-112 411.0 300 72.0
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 2.9e-112 410.6 286 71.7
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.2e-105 388.7 308 62.0
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 4.3e-92 343.6 194 85.1
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 8.1e-91 339.3 264 67.4
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 2.4e-82 311.2 387 47.8
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 1.1e-63 249.2 274 52.2
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 7.2e-63 246.5 182 69.2
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 4.4e-52 210.7 139 75.5
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 4.2e-47 194.1 140 68.6
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 3.7e-43 181.0 117 77.8
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 2.0e-33 148.7 94 74.5
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 7.3e-31 140.2 83 77.1
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 6.8e-29 133.7 176 43.2
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 3.4e-28 131.3 82 80.5
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.7e-27 129.0 76 81.6
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 3.2e-26 124.8 104 59.6
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 2.8e-22 111.7 74 77.0
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 1.2e-20 106.3 84 63.1
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 9.8e-20 103.2 81 63.0
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 5.6e-15 87.4 62 66.1
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 8.1e-14 83.6 105 52.4
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 5.4e-10 70.9 42 85.7
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 6.6e-08 63.9 50 62.0
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 5.6e-07 60.8 41 75.6


User provided reference genes

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