Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1388 Capsella rubella HOM05D010720 ORTHO05D009355 1.6e-121 439.5 233 100.0
AL2G26210 Arabidopsis lyrata HOM05D010720 ORTHO05D009355 2.6e-95 352.4 234 80.3
AT1G67540 Arabidopsis thaliana HOM05D010720 ORTHO05D009355 1.7e-91 339.7 235 79.1
Thhalv10019017m.g Eutrema salsugineum HOM05D010720 ORTHO05D009355 3.4e-87 325.5 234 73.9
CARHR060110 Cardamine hirsuta HOM05D010720 ORTHO05D009355 1.2e-81 307.0 244 68.9
Sp5g22550 Schrenkiella parvula HOM05D010720 ORTHO05D009355 1.1e-77 293.9 220 72.3
BcaB05g24293 Brassica carinata HOM05D010720 ORTHO05D009355 1.5e-74 283.5 232 66.4
BcaC03g14845 Brassica carinata HOM05D010720 ORTHO05D009355 3.6e-73 278.9 232 65.5
BcaNung05070 Brassica carinata HOM05D010720 ORTHO05D009355 3.6e-73 278.9 234 65.4
BolC2t08453H Brassica oleracea HOM05D010720 ORTHO05D009355 1.1e-72 277.3 232 65.9
C02p23110 Brassica napus HOM05D010720 ORTHO05D009355 1.4e-72 276.9 232 65.1
A02p14300 Brassica napus HOM05D010720 ORTHO05D009355 3.1e-72 275.8 232 64.7
BraA02t06491Z Brassica rapa HOM05D010720 ORTHO05D009355 3.1e-72 275.8 232 64.7
A07p34090 Brassica napus HOM05D010720 ORTHO05D009355 1.6e-65 253.4 234 61.5
C06p42700 Brassica napus HOM05D010720 ORTHO05D009355 3.1e-64 249.2 234 60.3
BolC6t39169H Brassica oleracea HOM05D010720 ORTHO05D009355 3.1e-64 249.2 234 60.3
BraA07t31035Z Brassica rapa HOM05D010720 ORTHO05D009355 6.9e-64 248.1 234 60.3
Aa31sc48G30 Aethionema arabicum HOM05D010720 ORTHO05D009355 1.3e-62 243.8 233 60.5
BcaB03g15187 Brassica carinata HOM05D010720 ORTHO05D009355 5.4e-61 238.4 234 58.1
THA.LOC104807888 Tarenaya hassleriana HOM05D010720 ORTHO05D009355 2.0e-39 166.8 224 46.4
Hma1.2p1_1239F.1_g269420 Hydrangea macrophylla HOM05D007857 ORTHO05D009355 6.3e-17 92.0 142 38.0
COL.COLO4_20347 Corchorus olitorius HOM05D007857 ORTHO05D009355 1.6e-15 87.4 257 29.6
Oeu020304.1 Olea europaea HOM05D001334 ORTHO05D001119 7.7e-15 85.1 108 44.4
Dinv10979 Davidia involucrata HOM05D007857 ORTHO05D009355 2.2e-14 83.6 271 27.3
Rhsim12G0103100 Rhododendron simsii HOM05D007857 ORTHO05D009355 2.2e-14 83.6 165 34.5
Prupe.1G231500 Prunus persica HOM05D007857 ORTHO05D009355 6.5e-14 82.0 225 32.4
Actinidia20693 Actinidia chinensis HOM05D007857 ORTHO05D009355 5.5e-13 79.0 152 35.5
Gohir.D02G151200 Gossypium hirsutum HOM05D007857 ORTHO05D009355 9.4e-13 78.2 103 42.7
QL03p054319 Quercus lobata HOM05D007857 ORTHO05D009355 9.4e-13 78.2 283 26.5
Dinv14814 Davidia involucrata HOM05D007857 ORTHO05D009355 2.1e-12 77.0 202 32.7
Thecc.02G276200 Theobroma cacao HOM05D007857 ORTHO05D009355 2.1e-12 77.0 126 38.9
CSS0005757 Camellia sinensis var. sinensis HOM05D007857 ORTHO05D009355 2.7e-12 76.6 262 29.0
Gohir.A03G127600 Gossypium hirsutum HOM05D007857 ORTHO05D009355 2.7e-12 76.6 126 38.9
Lalb_Chr07g0187361 Lupinus albus HOM05D007857 ORTHO05D009355 3.6e-12 76.3 268 27.6
PGSC0003DMG400017971 Solanum tuberosum HOM05D007857 ORTHO05D009355 3.6e-12 76.3 157 34.4
TWI75G0924 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 3.6e-12 76.3 249 30.9
TAR374G0584 Trochodendron aralioides HOM05D007857 ORTHO05D009355 3.6e-12 76.3 265 28.7
DCAR_031188 Daucus carota HOM05D007857 ORTHO05D009355 4.7e-12 75.9 245 27.8
MD16G1115600 Malus domestica HOM05D007857 ORTHO05D009355 4.7e-12 75.9 101 46.5
Gorai.005G169600 Gossypium raimondii HOM05D007857 ORTHO05D009355 1.0e-11 74.7 126 38.1
Sabra10G0047600 Salix brachista HOM05D007857 ORTHO05D009355 1.4e-11 74.3 226 30.5
Eucgr.H04657 Eucalyptus grandis HOM05D007857 ORTHO05D009355 1.8e-11 73.9 262 27.9
RcHm_v2.0_Chr4g0430861 Rosa chinensis HOM05D007857 ORTHO05D009355 2.3e-11 73.6 101 45.5
Atru.chr11.2290 Acer truncatum HOM05D007857 ORTHO05D009355 3.0e-11 73.2 261 28.0
Glyma.05G146200 Glycine max HOM05D007857 ORTHO05D009355 3.0e-11 73.2 202 27.7
Cpa.g.sc43.26 Carica papaya HOM05D007857 ORTHO05D009355 4.0e-11 72.8 237 28.7
PSO063G0898 Papaver somniferum HOM05D007857 ORTHO05D009355 5.2e-11 72.4 101 42.6
PSO782G1056 Papaver somniferum HOM05D007857 ORTHO05D009355 6.7e-11 72.0 101 41.6
Haze_12382 Corylus avellana HOM05D007857 ORTHO05D009355 1.2e-10 71.2 208 29.3
Glyma.03G186400 Glycine max HOM05D007857 ORTHO05D009355 1.5e-10 70.9 193 31.1
Ciclev10033758m.g Citrus clementina HOM05D007857 ORTHO05D009355 2.6e-10 70.1 303 27.1
Potri.008G177300 Populus trichocarpa HOM05D007857 ORTHO05D009355 2.6e-10 70.1 150 36.0
Solyc04g045390.1 Solanum lycopersicum HOM05D007857 ORTHO05D009355 3.3e-10 69.7 191 29.3
TWI36G0032 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 3.3e-10 69.7 142 33.8
TWI36G1497 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 3.3e-10 69.7 142 33.8
MD13G1115600 Malus domestica HOM05D007857 ORTHO05D009355 4.4e-10 69.3 196 28.6
CsaV3_2G025390 Cucumis sativus L. HOM05D007857 ORTHO05D009355 5.7e-10 68.9 180 31.1
Migut.K00709 Erythranthe guttata HOM05D007857 ORTHO05D009355 5.7e-10 68.9 126 36.5
Lj4g0021592 Lotus japonicus HOM05D007857 ORTHO05D009355 5.7e-10 68.9 125 31.2
Phvul.002G175100 Phaseolus vulgaris HOM05D007857 ORTHO05D009355 5.7e-10 68.9 250 27.2
Sc04g0010010 Simmondsia chinensis HOM05D007857 ORTHO05D009355 9.7e-10 68.2 285 28.8
Potri.010G057800 Populus trichocarpa HOM05D007857 ORTHO05D009355 1.7e-09 67.4 229 29.3
Sopen04g010360 Solanum pennellii HOM05D007857 ORTHO05D009355 1.7e-09 67.4 120 35.8
Ca_18058_v3 Cicer arietinum L. HOM05D007857 ORTHO05D009355 2.8e-09 66.6 250 26.8
ClCG08G017230 Citrullus lanatus HOM05D007857 ORTHO05D009355 2.8e-09 66.6 177 32.8
Glyma.19G186500 Glycine max HOM05D007857 ORTHO05D009355 4.8e-09 65.9 198 28.8
CANSAT01G1499 Cannabis sativa HOM05D007857 ORTHO05D009355 8.2e-09 65.1 195 27.2
CiPaw.06G100500 Carya illinoinensis HOM05D007857 ORTHO05D009355 8.2e-09 65.1 199 28.1
SalBow2G3021 Salvia bowleyana HOM05D007857 ORTHO05D009355 1.4e-08 64.3 119 38.7
Sed0017756 Sechium edule HOM05D007857 ORTHO05D009355 1.8e-08 63.9 165 29.7
Manes.13G017400 Manihot esculenta HOM05D007857 ORTHO05D009355 2.4e-08 63.5 148 31.8
Nn4g22377 Nelumbo nucifera HOM05D007857 ORTHO05D009355 2.4e-08 63.5 115 35.7
arahy.Tifrunner.gnm1.ann1.AFM6H1 Arachis hypogaea HOM05D007857 ORTHO05D009355 4.1e-08 62.8 189 30.2
MELO3C010736.2 Cucumis melo HOM05D007857 ORTHO05D009355 4.1e-08 62.8 180 32.2
PSO357G0688 Papaver somniferum HOM05D007857 ORTHO05D009355 7.0e-08 62.0 141 35.5
Cfa009341 Carpinus fangiana HOM05D007857 ORTHO05D009355 1.6e-07 60.8 206 26.2
arahy.Tifrunner.gnm1.ann1.32T9N9 Arachis hypogaea HOM05D007857 ORTHO05D009355 2.0e-07 60.5 187 29.4
arahy.Tifrunner.gnm1.ann1.ZB6N55 Arachis hypogaea HOM05D007857 ORTHO05D009355 2.0e-07 60.5 187 29.4
Nitab4.5_0004967g0040 Nicotiana tabacum HOM05D007857 ORTHO05D009355 7.7e-07 58.5 102 34.3
FvH4_4g24090 Fragaria vesca HOM05D007857 ORTHO05D009355 1.0e-06 58.2 154 34.4
Lsat_1_v5_gn_8_149921 Lactuca sativa HOM05D007857 ORTHO05D009355 1.3e-06 57.8 186 29.0
FAN07G0728 Fragaria x ananassa HOM05D007857 ORTHO05D009355 1.7e-06 57.4 162 32.7
Psat7g078480 Pisum sativum HOM05D007857 ORTHO05D009355 2.9e-06 56.6 254 26.0
SHI17949 Sapria himalayana HOM05D007857 ORTHO05D009355 2.9e-06 56.6 129 32.6
Aqoxy5G03443 Aquilegia oxysepala HOM05D007857 ORTHO05D009355 5.0e-06 55.8 161 30.4
FAN12G2990 Fragaria x ananassa HOM05D007857 ORTHO05D009355 8.5e-06 55.1 154 33.8
Sabra08G0135300 Salix brachista HOM05D007857 ORTHO05D009355 8.5e-06 55.1 159 30.2


User provided reference genes

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