Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1370 Capsella rubella HOM05D002352 ORTHO05D014906 2.8e-42 174.9 88 100.0
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 1.7e-10 69.3 91 50.5
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 6.3e-10 67.4 91 51.6
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 6.3e-10 67.4 91 51.6
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 6.3e-10 67.4 91 51.6
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 6.3e-10 67.4 91 51.6
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 6.3e-10 67.4 91 51.6
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 8.2e-10 67.0 91 49.5
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 8.2e-10 67.0 91 49.5
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 8.2e-10 67.0 91 49.5
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 8.2e-10 67.0 91 49.5
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 8.2e-10 67.0 91 49.5
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 8.2e-10 67.0 90 48.9
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 1.4e-09 66.2 91 48.4
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 1.4e-09 66.2 91 50.5
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 1.8e-09 65.9 91 48.4
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 1.8e-09 65.9 91 48.4
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 2.4e-09 65.5 90 51.1
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 3.1e-09 65.1 91 50.5
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 3.1e-09 65.1 90 47.8
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 3.1e-09 65.1 90 48.9
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 4.1e-09 64.7 91 48.4
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 4.1e-09 64.7 91 49.5
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 4.1e-09 64.7 91 49.5
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 4.1e-09 64.7 90 48.9
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 5.3e-09 64.3 90 47.8
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 5.3e-09 64.3 90 47.8
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 9.1e-09 63.5 91 47.3
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 9.1e-09 63.5 90 48.9
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 9.1e-09 63.5 90 48.9
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 9.1e-09 63.5 91 49.5
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 9.1e-09 63.5 91 48.4
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 9.1e-09 63.5 91 46.2
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 9.1e-09 63.5 91 48.4
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 9.1e-09 63.5 91 48.4
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 1.5e-08 62.8 91 46.2
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 1.5e-08 62.8 91 47.3
GSVIVG01006792001 Vitis vinifera HOM05D002352 ORTHO05D003724 1.5e-08 62.8 90 47.8
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 2.0e-08 62.4 90 48.9
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 2.0e-08 62.4 90 47.8
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 2.0e-08 62.4 90 45.6
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 2.0e-08 62.4 90 45.6
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 2.0e-08 62.4 90 45.6
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 2.0e-08 62.4 91 46.2
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 2.0e-08 62.4 90 46.7
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 2.6e-08 62.0 91 48.4
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 2.6e-08 62.0 91 48.4
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 2.6e-08 62.0 91 48.4
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 2.6e-08 62.0 91 48.4
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 2.6e-08 62.0 91 48.4
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 2.6e-08 62.0 90 47.8
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 2.6e-08 62.0 90 46.7
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 2.6e-08 62.0 91 46.2
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 2.6e-08 62.0 91 42.9
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 2.6e-08 62.0 91 44.0
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 3.4e-08 61.6 91 46.2
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 3.4e-08 61.6 90 46.7
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 3.4e-08 61.6 91 47.3
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 3.4e-08 61.6 91 47.3
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 4.5e-08 61.2 91 46.2
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 4.5e-08 61.2 96 44.8
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 4.5e-08 61.2 90 45.6
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 4.5e-08 61.2 90 46.7
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 4.5e-08 61.2 90 45.6
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 4.5e-08 61.2 90 45.6
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 5.9e-08 60.8 91 44.0
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 5.9e-08 60.8 91 45.1
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 5.9e-08 60.8 91 45.1
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 5.9e-08 60.8 91 46.2
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.9e-08 60.8 91 46.2
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.9e-08 60.8 91 46.2
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.9e-08 60.8 91 46.2
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.9e-08 60.8 91 46.2
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 5.9e-08 60.8 91 45.1
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 5.9e-08 60.8 91 45.1
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 5.9e-08 60.8 90 46.7
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 5.9e-08 60.8 90 45.6
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 5.9e-08 60.8 90 44.4
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 5.9e-08 60.8 91 44.0
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 5.9e-08 60.8 90 46.7
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 5.9e-08 60.8 91 45.1
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 5.9e-08 60.8 91 46.2
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 7.7e-08 60.5 91 47.3
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 7.7e-08 60.5 91 45.1
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 7.7e-08 60.5 91 45.1
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 7.7e-08 60.5 88 47.7
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 1.0e-07 60.1 91 45.1
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 1.0e-07 60.1 90 45.6
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 1.0e-07 60.1 91 46.2
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 1.3e-07 59.7 91 45.1
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 1.3e-07 59.7 90 46.7
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 1.3e-07 59.7 91 46.2
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 1.3e-07 59.7 90 46.7
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 1.3e-07 59.7 90 45.6
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 1.3e-07 59.7 90 45.6
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 1.3e-07 59.7 90 45.6
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 1.7e-07 59.3 119 41.2
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 1.7e-07 59.3 91 44.0
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.7e-07 59.3 91 45.1
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 2.2e-07 58.9 89 46.1
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 2.2e-07 58.9 91 46.2
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 2.2e-07 58.9 91 46.2
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 2.9e-07 58.5 91 44.0
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 2.9e-07 58.5 90 45.6
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 2.9e-07 58.5 90 43.3
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 3.8e-07 58.2 90 44.4
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 3.8e-07 58.2 91 42.9
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 3.8e-07 58.2 91 46.2
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 6.5e-07 57.4 91 42.9
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 6.5e-07 57.4 91 42.9
arahy.Tifrunner.gnm1.ann1.52CC3C Arachis hypogaea HOM05D002352 ORTHO05D014906 8.5e-07 57.0 99 46.5
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 8.5e-07 57.0 90 44.4
Lj6g0005213 Lotus japonicus HOM05D002352 ORTHO05D003724 8.5e-07 57.0 88 45.5
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 8.5e-07 57.0 90 44.4
TPR.G13263 Trifolium pratense HOM05D002352 ORTHO05D014906 8.5e-07 57.0 87 47.1
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 1.1e-06 56.6 90 44.4
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.1e-06 56.6 97 42.3
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 2.5e-06 55.5 91 44.0
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 2.5e-06 55.5 41 63.4
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 3.2e-06 55.1 91 46.2
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 3.2e-06 55.1 90 42.2
TPR.G28591 Trifolium pratense HOM05D002352 ORTHO05D014906 3.2e-06 55.1 94 43.6
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 4.2e-06 54.7 42 64.3
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 5.5e-06 54.3 91 40.7
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 7.2e-06 53.9 90 43.3
SHI23474 Sapria himalayana HOM05D002352 ORTHO05D003724 7.2e-06 53.9 42 64.3
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 7.2e-06 53.9 90 42.2


User provided reference genes

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