Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1364 Capsella rubella HOM05D005988 ORTHO05D007392 4.3e-52 207.6 98 100.0
CARHR059890 Cardamine hirsuta HOM05D005988 ORTHO05D007392 3.1e-50 201.4 96 97.9
AT1G67350 Arabidopsis thaliana HOM05D005988 ORTHO05D007392 6.9e-50 200.3 96 96.9
AL2G25900 Arabidopsis lyrata HOM05D005988 ORTHO05D007392 2.0e-49 198.7 95 96.8
Aa31sc377G10 Aethionema arabicum HOM05D005988 ORTHO05D007392 4.2e-47 191.0 96 92.7
BcaB03g15204 Brassica carinata HOM05D005988 ORTHO05D007392 1.1e-44 183.0 95 89.5
C06p42910 Brassica napus HOM05D005988 ORTHO05D007392 1.5e-44 182.6 98 90.8
BcaB05g24271 Brassica carinata HOM05D005988 ORTHO05D007392 4.3e-44 181.0 96 90.6
BcaB05g24277 Brassica carinata HOM05D005988 ORTHO05D007392 4.3e-44 181.0 96 90.6
BcaC08g46168 Brassica carinata HOM05D005988 ORTHO05D007392 4.3e-44 181.0 96 90.6
A07p33950 Brassica napus HOM05D005988 ORTHO05D007392 9.7e-44 179.9 96 89.6
Sp5g22300 Schrenkiella parvula HOM05D005988 ORTHO05D007392 3.7e-43 177.9 98 88.8
Thhalv10019308m.g Eutrema salsugineum HOM05D005988 ORTHO05D007392 4.8e-43 177.6 91 90.1
BcaC03g14837 Brassica carinata HOM05D005988 ORTHO05D007392 8.2e-43 176.8 94 89.4
A02p14180 Brassica napus HOM05D005988 ORTHO05D007392 8.2e-43 176.8 94 89.4
C02p22980 Brassica napus HOM05D005988 ORTHO05D007392 8.2e-43 176.8 94 89.4
BraA02t06481Z Brassica rapa HOM05D005988 ORTHO05D007392 8.2e-43 176.8 94 89.4
THA.LOC109117182 Tarenaya hassleriana HOM05D005988 ORTHO05D007392 4.1e-42 174.5 96 84.4
COL.COLO4_20400 Corchorus olitorius HOM05D005988 ORTHO05D007392 5.5e-39 164.1 92 78.3
Gohir.D02G149200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 1.2e-38 162.9 87 82.8
Gorai.005G167100 Gossypium raimondii HOM05D005988 ORTHO05D007392 1.2e-38 162.9 87 82.8
Cpa.g.sc43.58 Carica papaya HOM05D005988 ORTHO05D007392 1.6e-38 162.5 89 80.9
Gohir.A03G126200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 1.6e-38 162.5 87 82.8
PGR102G1123 Punica granatum HOM05D005988 ORTHO05D007392 7.9e-38 160.2 91 74.7
CSS0025775 Camellia sinensis var. sinensis HOM05D005988 ORTHO05D007392 1.8e-37 159.1 96 75.0
Manes.13G012300 Manihot esculenta HOM05D005988 ORTHO05D007392 5.1e-37 157.5 91 75.8
Eucgr.B03491 Eucalyptus grandis HOM05D005988 ORTHO05D007392 1.1e-36 156.4 91 75.8
Potri.001G055400 Populus trichocarpa HOM05D005988 ORTHO05D007392 1.1e-36 156.4 91 76.9
Glyma.05G147302 Glycine max HOM05D005988 ORTHO05D007392 1.5e-36 156.0 91 75.8
vmacro01331 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 2.0e-36 155.6 95 73.7
Atru.chr11.2323 Acer truncatum HOM05D005988 ORTHO05D007392 2.5e-36 155.2 95 72.6
Glyma.08G104300 Glycine max HOM05D005988 ORTHO05D007392 2.5e-36 155.2 91 74.7
Sed0026530 Sechium edule HOM05D005988 ORTHO05D007392 2.5e-36 155.2 85 81.2
Prupe.1G225900 Prunus persica HOM05D005988 ORTHO05D007392 3.3e-36 154.8 92 73.9
vmacro05591 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 3.3e-36 154.8 86 79.1
vmacro23425 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 3.3e-36 154.8 86 79.1
MELO3C011867.2 Cucumis melo HOM05D005988 ORTHO05D007392 4.3e-36 154.5 85 78.8
PSO017G5437 Papaver somniferum HOM05D005988 ORTHO05D007392 4.3e-36 154.5 88 77.3
Cfa009369 Carpinus fangiana HOM05D005988 ORTHO05D007392 5.7e-36 154.1 91 75.8
Haze_12418 Corylus avellana HOM05D005988 ORTHO05D007392 5.7e-36 154.1 91 75.8
MBI01_g01248_MAGBIO Magnolia biondii HOM05D005988 ORTHO05D007392 5.7e-36 154.1 88 77.3
CiPaw.05G109900 Carya illinoinensis HOM05D005988 ORTHO05D007392 7.4e-36 153.7 91 73.6
Hma1.2p1_0065F.1_g035500 Hydrangea macrophylla HOM05D005988 ORTHO05D007392 7.4e-36 153.7 96 75.0
Sabra03G0126500 Salix brachista HOM05D005988 ORTHO05D007392 7.4e-36 153.7 91 75.8
Thecc.02G210500 Theobroma cacao HOM05D005988 ORTHO05D007392 7.4e-36 153.7 87 77.0
Phvul.L002046 Phaseolus vulgaris HOM05D005988 ORTHO05D007392 9.7e-36 153.3 91 74.7
Potri.003G173000 Populus trichocarpa HOM05D005988 ORTHO05D007392 9.7e-36 153.3 91 74.7
Rhsim04G0162300 Rhododendron simsii HOM05D005988 ORTHO05D007392 9.7e-36 153.3 96 70.8
CANSAT01G3258 Cannabis sativa HOM05D005988 ORTHO05D007392 1.3e-35 152.9 87 77.0
Manes.12G011400 Manihot esculenta HOM05D005988 ORTHO05D007392 1.3e-35 152.9 91 72.5
Sabra01G0040000 Salix brachista HOM05D005988 ORTHO05D007392 1.3e-35 152.9 95 72.6
Aqoxy3G00796 Aquilegia oxysepala HOM05D005988 ORTHO05D007392 1.7e-35 152.5 85 77.6
CsaV3_5G030290 Cucumis sativus L. HOM05D005988 ORTHO05D007392 2.2e-35 152.1 85 77.6
ECA233G0411 Erigeron canadensis HOM05D005988 ORTHO05D007392 2.2e-35 152.1 94 73.4
Rhsim12G0099600 Rhododendron simsii HOM05D005988 ORTHO05D007392 2.2e-35 152.1 95 71.6
RcHm_v2.0_Chr4g0430261 Rosa chinensis HOM05D005988 ORTHO05D007392 2.2e-35 152.1 84 78.6
Lalb_Chr07g0187141 Lupinus albus HOM05D005988 ORTHO05D007392 3.7e-35 151.4 94 73.4
Nitab4.5_0006506g0010 Nicotiana tabacum HOM05D005988 ORTHO05D007392 6.3e-35 150.6 91 73.6
GSVIVG01010482001 Vitis vinifera HOM05D005988 ORTHO05D007392 8.2e-35 150.2 91 71.4
ATR0582G290 Amborella trichopoda HOM05D005988 ORTHO05D007392 1.1e-34 149.8 86 75.6
ClCG11G013680 Citrullus lanatus HOM05D005988 ORTHO05D007392 1.4e-34 149.4 91 71.4
DCAR_031202 Daucus carota HOM05D005988 ORTHO05D007392 1.4e-34 149.4 86 76.7
Nitab4.5_0005361g0020 Nicotiana tabacum HOM05D005988 ORTHO05D007392 1.4e-34 149.4 91 72.5
TPR.G34164 Trifolium pratense HOM05D005988 ORTHO05D007392 1.8e-34 149.1 91 72.5
Ca_18034_v3 Cicer arietinum L. HOM05D005988 ORTHO05D007392 2.4e-34 148.7 91 71.4
Lalb_Chr13g0294321 Lupinus albus HOM05D005988 ORTHO05D007392 2.4e-34 148.7 94 72.3
Hund13388 Selenicereus undatus HOM05D005988 ORTHO05D007392 2.4e-34 148.7 86 73.3
Cc11_g16890 Coffea canephora HOM05D005988 ORTHO05D007392 3.1e-34 148.3 94 70.2
FvH4_4g23770 Fragaria vesca HOM05D005988 ORTHO05D007392 3.1e-34 148.3 83 77.1
FAN07G1208 Fragaria x ananassa HOM05D005988 ORTHO05D007392 3.1e-34 148.3 83 77.1
FAN12G0190 Fragaria x ananassa HOM05D005988 ORTHO05D007392 3.1e-34 148.3 83 77.1
FAN17G2984 Fragaria x ananassa HOM05D005988 ORTHO05D007392 3.1e-34 148.3 83 77.1
CDE06G1110 Ceratophyllum demersum HOM05D005988 ORTHO05D007392 6.9e-34 147.1 86 74.4
Nn4g22324 Nelumbo nucifera HOM05D005988 ORTHO05D007392 6.9e-34 147.1 92 72.8
Psat0s2314g0040 Pisum sativum HOM05D005988 ORTHO05D007392 9.1e-34 146.7 84 75.0
HanXRQChr12g0372221 Helianthus annuus HOM05D005988 ORTHO05D007392 2.0e-33 145.6 90 72.2
Lj4g0004056 Lotus japonicus HOM05D005988 ORTHO05D007392 2.0e-33 145.6 91 69.2
EL10Ac2g02768 Beta vulgaris HOM05D005988 ORTHO05D007392 2.6e-33 145.2 85 72.9
CAN.G875.9 Capsicum annuum HOM05D005988 ORTHO05D007392 2.6e-33 145.2 85 77.6
MD16G1119100 Malus domestica HOM05D005988 ORTHO05D007392 3.4e-33 144.8 80 78.8
TPR.G17077 Trifolium pratense HOM05D005988 ORTHO05D007392 3.4e-33 144.8 92 71.7
arahy.Tifrunner.gnm1.ann1.5IUK3V Arachis hypogaea HOM05D005988 ORTHO05D007392 4.5e-33 144.4 84 75.0
arahy.Tifrunner.gnm1.ann1.CH2TLP Arachis hypogaea HOM05D005988 ORTHO05D007392 4.5e-33 144.4 84 75.0
arahy.Tifrunner.gnm1.ann1.NCU5C9 Arachis hypogaea HOM05D005988 ORTHO05D007392 4.5e-33 144.4 84 75.0
AUR62034347 Chenopodium quinoa HOM05D005988 ORTHO05D007392 4.5e-33 144.4 84 71.4
PGSC0003DMG400017679 Solanum tuberosum HOM05D005988 ORTHO05D007392 7.7e-33 143.7 84 76.2
arahy.Tifrunner.gnm1.ann1.XY4E2W Arachis hypogaea HOM05D005988 ORTHO05D007392 1.3e-32 142.9 84 73.8
AUR62022358 Chenopodium quinoa HOM05D005988 ORTHO05D007392 1.7e-32 142.5 88 68.2
Medtr8g080630 Medicago truncatula HOM05D005988 ORTHO05D007392 2.2e-32 142.1 93 68.8
Solyc04g045620.3 Solanum lycopersicum HOM05D005988 ORTHO05D007392 2.2e-32 142.1 83 77.1
Sopen04g017580 Solanum pennellii HOM05D005988 ORTHO05D007392 2.2e-32 142.1 83 77.1
Migut.E00018 Erythranthe guttata HOM05D005988 ORTHO05D007392 5.0e-32 141.0 95 70.5
Actinidia08072 Actinidia chinensis HOM05D005988 ORTHO05D007392 8.5e-32 140.2 88 73.9
FAN22G1192 Fragaria x ananassa HOM05D005988 ORTHO05D007392 8.5e-32 140.2 79 75.9
Os03g0685900 Oryza sativa ssp. japonica HOM05D005988 ORTHO05D007392 8.5e-32 140.2 94 63.8
Ah.10g030080 Amaranthus hybridus HOM05D005988 ORTHO05D007392 1.1e-31 139.8 81 72.8
Duzib251G0424 Durio zibethinus HOM05D005988 ORTHO05D007392 1.1e-31 139.8 87 71.3
Duzib251G0426 Durio zibethinus HOM05D005988 ORTHO05D007392 1.4e-31 139.4 87 70.1
Nitab4.5_0000060g0090 Nicotiana tabacum HOM05D005988 ORTHO05D007392 1.4e-31 139.4 81 77.8
SalBow8G0976 Salvia bowleyana HOM05D005988 ORTHO05D007392 1.9e-31 139.0 85 74.1
Sc15g0005560 Simmondsia chinensis HOM05D005988 ORTHO05D007392 1.9e-31 139.0 86 68.6
Sc15g0005760 Simmondsia chinensis HOM05D005988 ORTHO05D007392 1.9e-31 139.0 86 68.6
MD13G1118900 Malus domestica HOM05D005988 ORTHO05D007392 3.2e-31 138.3 79 75.9
Peaxi162Scf00038g00014 Petunia axillaris HOM05D005988 ORTHO05D007392 3.2e-31 138.3 96 70.8
TWI75G1041 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 4.2e-31 137.9 87 70.1
Zm00001eb290200 Zea mays HOM05D005988 ORTHO05D007392 9.4e-31 136.7 93 65.6
unitig_62.g23652 Utricularia gibba HOM05D005988 ORTHO05D007392 2.7e-30 135.2 94 67.0
HPP92_012485 Vanilla planifolia HOM05D005988 ORTHO05D007392 2.7e-30 135.2 94 69.1
DCAR_024095 Daucus carota HOM05D005988 ORTHO05D007392 3.6e-30 134.8 84 69.0
Zm00001eb422590 Zea mays HOM05D005988 ORTHO05D007392 4.7e-30 134.4 93 64.5
TWI18G1296 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 7.9e-30 133.7 87 66.7
QL03p052764 Quercus lobata HOM05D005988 ORTHO05D007392 1.4e-29 132.9 84 67.9
SGA_v2.0_scaffold144G35838 Striga asiatica HOM05D005988 ORTHO05D007392 9.7e-28 126.7 86 67.4
Lalb_Chr23g0278041 Lupinus albus HOM05D005988 ORTHO05D007392 9.1e-26 120.2 91 62.6
Lalb_Chr23g0278031 Lupinus albus HOM05D005988 ORTHO05D007392 5.9e-25 117.5 84 61.9
Lsat_1_v5_gn_7_95720 Lactuca sativa HOM05D005988 ORTHO05D007392 1.3e-24 116.3 72 68.1
Migut.G00897 Erythranthe guttata HOM05D005988 ORTHO05D007392 1.6e-22 109.4 70 68.6
Migut.O00848 Erythranthe guttata HOM05D005988 ORTHO05D007392 1.6e-22 109.4 70 68.6
CBR_g8533 Chara braunii HOM05D005988 ORTHO05D007392 4.8e-19 97.8 84 48.8
Nitab4.5_0001404g0080 Nicotiana tabacum HOM05D005988 ORTHO05D007392 8.2e-19 97.1 64 70.3
Pp3c3_5450 Physcomitrium patens HOM05D005988 ORTHO05D007392 1.8e-18 95.9 82 48.8
Mapoly0011s0010 Marchantia polymorpha HOM05D005988 ORTHO05D007392 2.5e-15 85.5 78 47.4
BcaB05g24274 Brassica carinata HOM05D005988 ORTHO05D007392 2.7e-14 82.0 88 58.0
AagrBONN_evm.TU.Sc2ySwM_117.535 Anthoceros agrestis HOM05D005988 ORTHO05D007392 1.4e-13 79.7 78 43.6
SMO356G0160 Selaginella moellendorffii HOM05D005988 ORTHO05D007392 2.8e-11 72.0 85 38.8
TAR629G1917 Trochodendron aralioides HOM05D000133 ORTHO05D002928 1.1e-10 70.1 42 64.3
Actinidia30649 Actinidia chinensis HOM05D005988 ORTHO05D007392 8.5e-08 60.5 41 73.2
arahy.Tifrunner.gnm1.ann1.BFR0IC Arachis hypogaea HOM05D005988 ORTHO05D007392 2.7e-06 55.5 56 44.6
Zm00001eb053260 Zea mays HOM05D005988 ORTHO05D007392 2.7e-06 55.5 36 66.7
Zm00001eb053240 Zea mays HOM05D005988 ORTHO05D007392 4.7e-06 54.7 36 63.9


User provided reference genes

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