Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 2.0e-264 915.2 455 100.0
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 1.1e-256 889.4 455 97.4
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 2.8e-255 884.8 455 96.3
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 4.1e-246 854.4 455 92.1
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 2.7e-245 851.7 455 91.4
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 4.2e-243 844.3 455 90.8
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 5.7e-240 833.9 455 89.9
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 1.3e-239 832.8 455 89.7
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 2.8e-239 831.6 474 86.5
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 1.7e-236 822.4 466 87.3
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 3.8e-236 821.2 455 89.0
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 8.5e-236 820.1 475 86.1
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 2.5e-235 818.5 484 84.5
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 1.7e-220 769.2 451 82.9
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 1.4e-214 749.6 454 81.7
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 7.0e-214 747.3 412 89.1
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 3.5e-205 718.4 453 76.2
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 4.6e-205 718.0 448 75.9
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 1.8e-201 706.1 462 76.6
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 1.3e-199 699.9 453 74.6
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 4.9e-199 698.0 452 73.2
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 1.9e-198 696.0 448 74.1
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 1.9e-198 696.0 453 73.5
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 7.1e-198 694.1 448 73.7
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 1.6e-197 693.0 449 73.9
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 1.6e-197 693.0 448 73.4
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 2.1e-197 692.6 461 72.7
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 2.1e-197 692.6 448 73.4
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 6.0e-197 691.0 452 72.3
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 7.8e-197 690.6 452 71.5
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 1.3e-196 689.9 448 72.5
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 1.7e-196 689.5 448 74.6
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 6.6e-196 687.6 449 73.3
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 8.6e-196 687.2 448 73.0
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 1.1e-195 686.8 449 72.8
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 1.5e-195 686.4 448 72.3
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 1.9e-195 686.0 455 71.6
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.9e-195 686.0 448 73.2
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 5.6e-195 684.5 448 72.1
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 5.6e-195 684.5 477 70.9
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 5.6e-195 684.5 455 72.3
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 5.6e-195 684.5 448 72.3
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 9.6e-195 683.7 448 74.1
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 1.6e-194 682.9 474 68.6
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 2.1e-194 682.6 448 73.2
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 2.8e-194 682.2 451 72.1
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 3.6e-194 681.8 448 73.0
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 3.6e-194 681.8 449 72.6
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 8.1e-194 680.6 452 73.0
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.4e-193 679.9 448 73.0
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 1.8e-193 679.5 451 72.5
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 5.2e-193 677.9 448 73.2
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 1.2e-192 676.8 449 71.7
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 1.5e-192 676.4 452 70.8
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 1.5e-192 676.4 449 71.0
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 3.4e-192 675.2 413 77.5
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 7.6e-192 674.1 451 71.6
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 7.6e-192 674.1 449 70.6
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 9.9e-192 673.7 444 71.4
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 1.3e-191 673.3 437 73.9
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 2.9e-191 672.2 453 70.9
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 2.9e-191 672.2 448 72.1
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 8.4e-191 670.6 449 70.2
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 8.4e-191 670.6 448 70.5
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 1.1e-190 670.2 457 69.1
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 1.9e-190 669.5 449 70.6
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 2.4e-190 669.1 460 70.4
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 2.4e-190 669.1 448 69.9
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 5.4e-190 667.9 450 71.6
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 9.3e-190 667.2 448 72.3
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 6.0e-189 664.5 455 70.5
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 6.0e-189 664.5 454 69.4
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 1.3e-188 663.3 451 70.5
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 2.3e-188 662.5 448 71.2
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 8.7e-188 660.6 448 70.5
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 1.9e-187 659.4 479 66.8
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 1.8e-185 652.9 432 72.7
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 3.1e-185 652.1 449 67.5
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 5.3e-185 651.4 453 70.2
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 5.3e-185 651.4 448 68.3
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 2.6e-184 649.0 448 69.2
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 2.2e-183 646.0 448 68.5
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 2.2e-183 646.0 453 68.2
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 3.8e-183 645.2 443 69.3
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 3.2e-182 642.1 453 69.3
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 5.4e-182 641.3 466 65.9
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 7.1e-182 641.0 452 69.0
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 1.8e-180 636.3 458 66.4
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 4.0e-177 625.2 463 66.7
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 1.7e-175 619.8 501 63.9
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 6.4e-175 617.8 433 65.6
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 1.9e-174 616.3 452 67.3
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 3.2e-174 615.5 486 64.2
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 8.7e-172 607.4 432 67.6
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 1.1e-171 607.1 407 71.0
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 1.6e-170 603.2 482 60.0
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 4.0e-169 598.6 385 72.2
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 2.2e-167 592.8 407 70.8
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 1.9e-166 589.7 409 68.9
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 3.9e-164 582.0 454 70.3
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 7.4e-163 577.8 448 63.6
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 6.3e-162 574.7 380 73.2
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 1.8e-161 573.2 461 62.3
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 4.5e-160 568.5 451 62.5
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 2.3e-156 556.2 452 59.3
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 8.7e-156 554.3 426 62.2
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 1.4e-150 537.0 430 59.5
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 7.9e-149 531.2 426 60.3
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 3.4e-144 515.8 322 76.1
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 5.0e-143 511.9 431 56.4
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 5.9e-128 461.8 273 78.8
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 2.7e-112 409.8 434 45.6
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 4.5e-112 409.1 441 48.8
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 2.9e-111 406.4 448 50.9
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 4.6e-96 355.9 316 58.2
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 7.5e-91 338.6 367 51.0
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 3.5e-88 329.7 485 39.6
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 2.4e-84 317.0 181 81.2
MD16G1122200 Malus domestica HOM05D005577 ORTHO05D006941 1.5e-54 218.0 348 37.9
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 1.3e-53 214.9 374 39.0
Psat7g076800 Pisum sativum HOM05D005577 ORTHO05D006941 2.1e-53 214.2 188 58.5
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 9.0e-52 208.8 108 84.3
Atru.chr11.2354 Acer truncatum HOM05D005577 ORTHO05D006941 3.3e-38 163.7 124 65.3
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 2.4e-36 157.5 137 60.6
Atru.chr11.2353 Acer truncatum HOM05D005577 ORTHO05D006941 4.1e-36 156.8 124 66.1
Dinv17584 Davidia involucrata HOM05D005577 ORTHO05D006941 1.9e-33 147.9 410 30.5
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 9.7e-30 135.6 83 68.7
A10p10750 Brassica napus HOM05D005577 ORTHO05D006941 2.8e-29 134.0 69 88.4
SHI17983 Sapria himalayana HOM05D005577 ORTHO05D006941 2.6e-27 127.5 102 60.8
Lsat_1_v5_gn_0_16180 Lactuca sativa HOM05D005577 ORTHO05D006941 3.8e-26 123.6 123 49.6
Potri.017G053801 Populus trichocarpa HOM05D005577 ORTHO05D006941 3.7e-21 107.1 53 81.1
MCO16G135 Micromonas commoda HOM05D005577 ORTHO05D267611 3.5e-19 100.5 207 30.4
MD16G1122100 Malus domestica HOM05D005577 ORTHO05D006941 1.3e-18 98.6 75 58.7
RcHm_v2.0_Chr4g0417241 Rosa chinensis HOM05D005577 ORTHO05D006941 1.3e-18 98.6 67 68.7
QL10p065845 Quercus lobata HOM05D000176 ORTHO05D000106 7.2e-17 92.8 104 46.2
Duzib268G0110 Durio zibethinus HOM05D005577 ORTHO05D006941 2.6e-14 84.3 100 49.0
SHI17982 Sapria himalayana HOM05D005577 ORTHO05D006941 3.4e-14 84.0 62 59.7
SHI17981 Sapria himalayana HOM05D005577 ORTHO05D006941 2.7e-11 74.3 63 60.3


User provided reference genes

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