Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1347 Capsella rubella HOM05D001568 ORTHO05D004404 5.2e-28 127.5 89 100.0
AL2G25700 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 1.4e-25 119.4 89 93.3
Thhalv10019331m.g Eutrema salsugineum HOM05D001568 ORTHO05D004404 1.3e-23 112.8 89 89.9
Sp5g22130 Schrenkiella parvula HOM05D001568 ORTHO05D004404 1.3e-23 112.8 89 88.8
A07p33830 Brassica napus HOM05D001568 ORTHO05D004404 1.4e-20 102.8 89 80.9
C06p43090 Brassica napus HOM05D001568 ORTHO05D004404 1.4e-20 102.8 89 82.0
BolC6t39129H Brassica oleracea HOM05D001568 ORTHO05D004404 1.4e-20 102.8 89 79.8
BraA07t31009Z Brassica rapa HOM05D001568 ORTHO05D004404 1.4e-20 102.8 89 80.9
CARHR059650 Cardamine hirsuta HOM05D001568 ORTHO05D004404 5.4e-17 90.9 85 81.2
BolC2t08417H Brassica oleracea HOM05D001568 ORTHO05D004404 9.1e-17 90.1 89 80.9
C02p22640 Brassica napus HOM05D001568 ORTHO05D004404 1.2e-16 89.7 89 80.9
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 1.2e-16 89.7 89 59.6
A02p14040 Brassica napus HOM05D001568 ORTHO05D004404 2.0e-16 89.0 89 80.9
BraA02t06465Z Brassica rapa HOM05D001568 ORTHO05D004404 2.0e-16 89.0 89 80.9
Aa31LG2G3570 Aethionema arabicum HOM05D001568 ORTHO05D004404 3.5e-16 88.2 80 82.5
Sed0014020 Sechium edule HOM05D001568 ORTHO05D004404 7.5e-11 70.5 83 49.4
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.7e-10 69.3 88 47.7
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.2e-10 68.9 41 80.5
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.2e-10 68.9 41 80.5
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 2.8e-10 68.6 83 51.8
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 6.3e-10 67.4 41 78.0
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 8.3e-10 67.0 81 46.9
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 1.1e-09 66.6 41 75.6
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.1e-09 66.6 85 47.1
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.1e-09 66.6 41 75.6
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 1.4e-09 66.2 85 48.2
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.4e-09 66.2 88 47.7
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 1.8e-09 65.9 85 45.9
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 2.4e-09 65.5 85 48.2
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 2.4e-09 65.5 85 47.1
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 4.1e-09 64.7 85 44.7
Sed0003724 Sechium edule HOM05D001568 ORTHO05D004404 4.1e-09 64.7 89 41.6
arahy.Tifrunner.gnm1.ann1.IG7GQE Arachis hypogaea HOM05D001568 ORTHO05D004404 5.4e-09 64.3 41 73.2
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 5.4e-09 64.3 85 48.2
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 7.0e-09 63.9 85 44.7
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 7.0e-09 63.9 41 75.6
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 9.2e-09 63.5 41 73.2
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 9.2e-09 63.5 85 44.7
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 9.2e-09 63.5 85 44.7
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 9.2e-09 63.5 41 73.2
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 9.2e-09 63.5 41 70.7
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 9.2e-09 63.5 41 73.2
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 9.2e-09 63.5 41 73.2
arahy.Tifrunner.gnm1.ann1.R2NHXZ Arachis hypogaea HOM05D001568 ORTHO05D004404 1.2e-08 63.2 41 70.7
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 1.2e-08 63.2 41 73.2
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 1.2e-08 63.2 85 45.9
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 1.2e-08 63.2 88 42.0
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 1.2e-08 63.2 88 42.0
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 1.2e-08 63.2 90 46.7
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 1.6e-08 62.8 85 48.2
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.6e-08 62.8 41 73.2
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 2.0e-08 62.4 84 47.6
DCAR_010979 Daucus carota HOM05D001568 ORTHO05D004404 2.0e-08 62.4 89 44.9
DCAR_010982 Daucus carota HOM05D001568 ORTHO05D004404 2.0e-08 62.4 89 44.9
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 2.0e-08 62.4 85 44.7
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 3.5e-08 61.6 88 42.0
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 4.5e-08 61.2 85 41.2
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.5e-08 61.2 40 70.0
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 5.9e-08 60.8 88 42.0
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 5.9e-08 60.8 41 68.3
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 7.8e-08 60.5 41 65.9
HanXRQChr10g0283701 Helianthus annuus HOM05D001568 ORTHO05D004404 7.8e-08 60.5 89 43.8
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 7.8e-08 60.5 41 68.3
Potri.004G105800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.0e-07 60.1 40 65.0
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 1.0e-07 60.1 40 70.0
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.3e-07 59.7 41 68.3
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 1.7e-07 59.3 37 73.0
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 2.3e-07 58.9 88 46.6
Lsat_1_v5_gn_3_94821 Lactuca sativa HOM05D001568 ORTHO05D004404 2.9e-07 58.5 42 66.7
ECA246G2394 Erigeron canadensis HOM05D001568 ORTHO05D004404 3.9e-07 58.2 42 66.7
Lsat_1_v5_gn_4_175441 Lactuca sativa HOM05D001568 ORTHO05D004404 8.6e-07 57.0 42 66.7
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 4.3e-06 54.7 41 61.0
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 4.3e-06 54.7 37 64.9
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.3e-06 54.7 34 76.5


User provided reference genes

Program Settings