Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 0.0e+00 4206.8 2209 100.0
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 0.0e+00 3831.6 2234 90.5
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 0.0e+00 3739.9 2225 89.1
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 0.0e+00 3623.6 2226 86.8
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 0.0e+00 3616.6 2319 83.7
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 3585.4 2216 86.4
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 0.0e+00 3583.5 2217 86.5
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 3580.0 2216 86.3
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 0.0e+00 3578.9 2216 86.2
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 0.0e+00 3392.4 2168 82.8
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 0.0e+00 3045.4 2204 73.5
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 0.0e+00 2548.5 2206 62.6
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 0.0e+00 2525.0 2197 61.9
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 0.0e+00 2524.2 2273 60.5
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 0.0e+00 2522.3 2191 62.6
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2519.2 2209 61.9
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 0.0e+00 2511.9 2225 61.7
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2505.7 2147 63.3
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 0.0e+00 2499.9 2160 62.3
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 0.0e+00 2487.2 2215 61.2
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 0.0e+00 2486.1 2197 61.4
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 0.0e+00 2477.6 2234 61.1
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2464.5 2193 62.3
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2452.9 2236 60.2
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 0.0e+00 2451.8 2136 62.5
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 0.0e+00 2444.5 2170 61.9
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2432.5 2133 61.8
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 0.0e+00 2430.6 2206 60.1
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2398.2 1897 67.1
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 0.0e+00 2389.8 2198 60.0
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2384.0 2186 60.6
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 0.0e+00 2375.5 2130 60.5
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 0.0e+00 2368.2 2237 58.5
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 0.0e+00 2350.1 2171 59.3
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 0.0e+00 2343.9 2136 59.6
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 0.0e+00 2340.8 2219 58.2
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2330.8 2094 60.6
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2328.1 2235 59.1
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 0.0e+00 2325.4 2137 59.8
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 0.0e+00 2313.5 2218 57.6
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 0.0e+00 2294.2 2199 57.6
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 0.0e+00 2291.5 1995 60.7
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 0.0e+00 2285.0 2224 57.9
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 0.0e+00 2283.8 2232 57.4
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 0.0e+00 2275.4 2147 58.4
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 0.0e+00 2269.6 2049 59.9
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 2269.2 2121 57.7
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2241.5 2182 57.4
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2240.3 2078 58.3
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2240.3 2078 58.3
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 0.0e+00 2226.4 2077 58.7
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 0.0e+00 2222.2 2238 55.4
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2214.5 2195 57.3
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 0.0e+00 2210.6 2245 56.3
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 0.0e+00 2210.6 2072 58.7
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 0.0e+00 2202.6 2098 57.9
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 0.0e+00 2182.1 2561 51.3
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 2179.8 1632 69.2
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2174.4 2244 54.7
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2136.3 2233 54.5
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 0.0e+00 2135.9 2098 56.7
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 0.0e+00 2107.8 2370 52.2
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 2101.6 2265 53.6
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2090.8 2176 56.1
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 0.0e+00 2077.4 2280 53.1
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 0.0e+00 2056.6 1449 73.2
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2051.2 2194 53.3
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 0.0e+00 2023.8 1968 57.3
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 0.0e+00 1977.6 2242 52.5
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 0.0e+00 1953.3 2211 51.9
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 0.0e+00 1931.8 2098 53.0
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 1914.0 2093 52.7
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 0.0e+00 1869.7 3163 40.2
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 0.0e+00 1784.6 2207 47.5
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 0.0e+00 1778.8 2124 49.2
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 0.0e+00 1680.2 1773 54.5
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 0.0e+00 1646.7 1983 48.4
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 0.0e+00 1592.4 1766 52.2
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 0.0e+00 1586.2 1727 51.8
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 1565.8 1129 71.9
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 0.0e+00 1558.9 1773 50.8
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 0.0e+00 1494.2 2047 43.5
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 0.0e+00 1458.0 833 91.4
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 0.0e+00 1397.1 2150 41.3
BcaB03g15908 Brassica carinata HOM05D003845 ORTHO05D004161 0.0e+00 1327.8 1064 71.0
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 0.0e+00 1320.1 1347 53.7
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 0.0e+00 1282.3 2040 40.3
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 0.0e+00 1245.0 2004 39.8
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 0.0e+00 1175.2 1566 45.3
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 0.0e+00 1165.6 1506 44.6
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 0.0e+00 1157.9 918 66.3
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 1104.4 1981 36.6
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 0.0e+00 1093.2 1030 57.5
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 0.0e+00 1081.2 1362 48.0
Ciclev10010942m.g Citrus clementina HOM05D003845 ORTHO05D004161 1.0e-281 974.9 1056 53.3
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 1.6e-271 941.0 830 59.3
Lj1g0022983 Lotus japonicus HOM05D003845 ORTHO05D004161 4.7e-231 806.6 1047 46.7
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 1.1e-230 805.4 1231 41.3
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 6.0e-202 709.9 962 45.4
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 5.7e-200 703.4 978 44.0
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 1.7e-196 691.8 723 53.9
DCAR_017205 Daucus carota HOM05D003845 ORTHO05D004161 1.1e-190 672.5 855 46.8
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 1.3e-180 639.0 578 60.4
CSS0018407 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 3.1e-174 617.8 442 73.8
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 2.2e-172 611.7 474 66.9
Ciclev10011943m.g Citrus clementina HOM05D003845 ORTHO05D004161 8.0e-162 576.6 386 75.4
ClCG11G005430 Citrullus lanatus HOM05D003845 ORTHO05D004161 9.8e-152 543.1 373 73.7
Lj2C445T15 Lonicera japonica HOM05D003845 ORTHO05D004161 1.3e-151 542.7 432 67.6
SEGI_40473 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 1.7e-127 462.6 403 60.0
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 2.4e-113 415.6 811 37.5
ATR0564G289 Amborella trichopoda HOM05D003845 ORTHO05D004161 5.6e-107 394.4 288 69.8
FAN09G0938 Fragaria x ananassa HOM05D003845 ORTHO05D004161 3.4e-104 385.2 264 74.6
Rhsim09G0080700 Rhododendron simsii HOM05D003845 ORTHO05D004161 3.1e-97 362.1 362 58.3
PRCOL_00002157 Prasinoderma coloniale HOM05D003845 ORTHO05D004161 2.3e-92 345.9 1494 26.4
Glyma.08G364200 Glycine max HOM05D003845 ORTHO05D004161 4.3e-91 341.7 557 39.5
SEGI_32880 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 6.2e-90 337.8 873 32.1
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 2.2e-87 329.3 290 58.3
RcHm_v2.0_Chr2g0163391 Rosa chinensis HOM05D003845 ORTHO05D004161 4.6e-77 295.0 287 57.8
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 3.3e-75 288.9 1780 23.1
Haze_14141 Corylus avellana HOM05D003845 ORTHO05D004161 1.4e-68 266.9 438 42.2
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 1.2e-64 253.8 312 50.0
CAN.G625.3 Capsicum annuum HOM05D003845 ORTHO05D004161 2.2e-63 249.6 160 79.4
COL.COLO4_05467 Corchorus olitorius HOM05D003845 ORTHO05D004161 2.5e-62 246.1 591 31.8
CARHR059590 Cardamine hirsuta HOM05D003845 ORTHO05D004161 4.2e-62 245.4 293 58.4
CSS0040864 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 6.5e-55 221.5 140 78.6
CSS0008855 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.9e-54 219.9 168 69.6
Lsat_1_v5_gn_3_65920 Lactuca sativa HOM05D003845 ORTHO05D004161 2.8e-50 206.1 180 64.4
Lsat_1_v5_gn_4_179241 Lactuca sativa HOM05D003845 ORTHO05D004161 2.8e-50 206.1 180 64.4
Lsat_1_v5_gn_5_95120 Lactuca sativa HOM05D000020 ORTHO05D000543 2.8e-50 206.1 180 64.4
Lsat_1_v5_gn_8_43240 Lactuca sativa HOM05D003845 ORTHO05D004161 2.8e-50 206.1 180 64.4
Ca_04078_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 5.9e-48 198.4 232 52.2
QL02p051676 Quercus lobata HOM05D003845 ORTHO05D004161 1.9e-46 193.4 125 81.6
Actinidia15875 Actinidia chinensis HOM05D003845 ORTHO05D004161 6.3e-42 178.3 118 78.0
CiPaw.04G041000 Carya illinoinensis HOM05D003845 ORTHO05D004161 1.2e-40 174.1 420 35.2
Lsat_1_v5_gn_5_70501 Lactuca sativa HOM05D003845 ORTHO05D004161 7.3e-38 164.9 129 68.2
Cpa.g.sc179.6 Carica papaya HOM05D003845 ORTHO05D004161 6.1e-37 161.8 139 64.0
Cfa024622 Carpinus fangiana HOM05D003845 ORTHO05D004161 4.6e-32 145.6 623 24.6
Lj6g0007936 Lotus japonicus HOM05D003845 ORTHO05D004161 9.5e-30 137.9 501 29.7
CDE02G2490 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 2.8e-29 136.3 232 38.4
Actinidia15877 Actinidia chinensis HOM05D003845 ORTHO05D004161 3.7e-26 125.9 212 38.2
Lsat_1_v5_gn_8_163720 Lactuca sativa HOM05D003845 ORTHO05D004161 4.9e-26 125.6 116 62.1
MCO14G535 Micromonas commoda HOM05D003845 ORTHO05D004161 2.5e-22 113.2 609 25.6
CSS0031203 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 7.3e-22 111.7 68 79.4
Gorai.001G080600 Gossypium raimondii HOM05D003845 ORTHO05D004161 7.3e-22 111.7 174 46.0
RcHm_v2.0_Chr2g0166401 Rosa chinensis HOM05D003845 ORTHO05D004161 8.9e-20 104.8 147 42.2
Cpa.g.sc3785.2 Carica papaya HOM05D003845 ORTHO05D004161 1.5e-19 104.0 75 72.0
Manes.07G074028 Manihot esculenta HOM05D003845 ORTHO05D004161 3.4e-19 102.8 80 65.0
Cpa.g.c36099 Carica papaya HOM05D003845 ORTHO05D004161 8.3e-18 98.2 75 68.0
Dinv33934 Davidia involucrata HOM05D003845 ORTHO05D004161 2.7e-16 93.2 233 36.9
CAN.G178.11 Capsicum annuum HOM05D007284 ORTHO05D009303 1.0e-15 91.3 142 46.5
CSS0027472 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.5e-14 87.4 53 77.4
COL.COLO4_16180 Corchorus olitorius HOM05D003845 ORTHO05D004161 1.9e-14 87.0 48 85.4
Actinidia20850 Actinidia chinensis HOM05D003845 ORTHO05D004161 3.3e-14 86.3 100 53.0
Cpa.g.sc179.7 Carica papaya HOM05D003845 ORTHO05D004161 5.6e-14 85.5 53 83.0
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 1.6e-13 84.0 158 33.5
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 2.8e-13 83.2 61 60.7
arahy.Tifrunner.gnm1.ann1.57NG5G Arachis hypogaea HOM05D003845 ORTHO05D004161 4.7e-13 82.4 53 77.4
Actinidia20836 Actinidia chinensis HOM05D004442 ORTHO05D002066 6.2e-13 82.0 68 63.2
EL10Ac8g19727 Beta vulgaris HOM05D003845 ORTHO05D004161 6.2e-13 82.0 53 81.1
arahy.Tifrunner.gnm1.ann1.395ZIT Arachis hypogaea HOM05D003845 ORTHO05D004161 2.3e-12 80.1 56 71.4
Actinidia13420 Actinidia chinensis HOM05D003845 ORTHO05D004161 4.0e-12 79.3 62 64.5
Actinidia17348 Actinidia chinensis HOM05D003226 ORTHO05D015784 5.2e-12 79.0 56 69.6
Actinidia17345 Actinidia chinensis HOM05D003845 ORTHO05D004161 6.8e-12 78.6 54 72.2
RcHm_v2.0_Chr2g0123031 Rosa chinensis HOM05D003845 ORTHO05D004161 6.8e-12 78.6 68 58.8
Os06g0505100 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 2.0e-11 77.0 107 34.6
Hund04285 Selenicereus undatus HOM05D003845 ORTHO05D004161 5.8e-11 75.5 66 57.6
Pp3c9_4980 Physcomitrium patens HOM05D003845 ORTHO05D004161 2.9e-10 73.2 115 38.3
CSS0006962 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.1e-09 71.2 42 83.3
EL10Ac9g21747 Beta vulgaris HOM05D000802 ORTHO05D001074 4.1e-09 69.3 44 84.1
Actinidia15876 Actinidia chinensis HOM05D003845 ORTHO05D004161 4.6e-08 65.9 69 42.0
ClCG11G005420 Citrullus lanatus HOM05D003845 ORTHO05D004161 4.6e-08 65.9 50 66.0
RcHm_v2.0_Chr2g0166391 Rosa chinensis HOM05D003845 ORTHO05D004161 4.6e-08 65.9 71 50.7
arahy.Tifrunner.gnm1.ann1.MNN8Y6 Arachis hypogaea HOM05D003845 ORTHO05D004161 2.3e-07 63.5 63 54.0
TPR.G40067 Trifolium pratense HOM05D003845 ORTHO05D004161 3.9e-07 62.8 51 62.7


User provided reference genes

Program Settings